BAC Information

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BAC

Clone NameB6Ng01-013K01
Chromosome15 (Build37)
Map Location 30,042,707 - 30,189,367
singlet/doubletdoublet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013K01.bB6Ng01-013K01.g
ACCDH848396DH848397
length881926
definitionDH848396|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K01, 5' end.DH848397|Mus musculus domesticus DNA, BAC clone: B6Ng01-013K01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,042,707 - 30,043,586)(30,188,430 - 30,189,367)
sequence
gaattctttaagaatggtaagcaatgttgcaatacatctttagcatattt
attcctttactcctcctagacccaccatgccttccatctcccacaacttc
atgtcctcttttgatttattttaatagttcaccaagtcgagtttttgctg
cccatgtacttaaagatgtggcctcatgcactggagtgttgtcacattac
cagaggccacacttgtaacaaaattgacttttcctctcttcattagtgga
gtggtcctgtcaatttagggcccttaacaccaaggacattaaattatatc
ttataaatctatagaaaataataacgttaaaacgttgcttagtataaatt
ataggattagaagttaagaactcagaggatatttcagacccaaatatgtt
tttactttcccaaatgggattaaaatgtgttaattgggcggtttctttta
aatctcagaaaaagaacacacacacaccctgataatagtagaataaaaat
ttttaggaaaaatcaatccaaccaggaaatagtgaagaaaagtttgcaaa
gaacactacaaaaaatgtttaatgatttaatataaggggcaaaaagttac
atttacacaactcggtatctagtatacagaatggtgacaccaattagtag
tagagcttaagtatgctaaatggggtcgtaaatgggtttaaaacattaca
cacaatattaactgtgaagtgtagatgataattagtctgatattgggaac
atttcatggtgtgtacatgcaccagcaaattctactgcactactgcatat
ctatttactttgttttttattaggtatttatttcatttacatttccaatg
ctatcccaaaagtttccccacccgctcccca
gaattcagtgcccccaattactggctttcccctgacctcatggctccatc
cttcaggacagaagcatagctacggtgatgcacaattcagtttgctttcc
agatattgctccatccccaactgcaatccaccccctctcgccacaaacta
cagagaccaacctgagtcctctccttcttgtttgcttagactcaaatcta
atacgtgatatagcctaatctgatagtatttattactgatttggtgcata
gatgataaggaagtagggacatccttttatggctatctacccccatggca
tttatgattccatcatgctaaagaaagtcaatctgagctacaaagtcacg
gtggtgccttgacccttacttagtgcaattgcccatctcccactgcactg
tgcccaaaaagatagagcttgggaagtgtactggctagttttgtgtcaac
ttgacacagctggagttatggagaaaggagcttcagttgaggaaatgcct
ccatgagatccaactgtaaggcattttctcaattagtgatcaagggtttc
aggccccttgtgggtggtgccatctctgggctggtagtcttggttctata
aaagagcaggctgagcaagccaggtgaggcaagccagtaaagaacatctc
tccatggcctctgcatcagctcctgcttcctgacctgcttgagttccagt
cctgggcttccttgggtgatgaacatcagtatggaagtgtaagccgaatt
aaccctttcctccccaacttgtttcttggtcatgatgtttgtgcggaaat
aaaaccctgactagacatgaagaatgcagtggggaacaagtcataaacat
acctaaagaatgctttatttccaaacattatctatccatggtatactatt
tctttccttcagagttgctcactatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30042707_30043586
seq2: B6Ng01-013K01.b_43_922

seq1  GAATTCTTTAAGAATGGTAAGCAATGTTGCAATACATCTTTAGCATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGAATGGTAAGCAATGTTGCAATACATCTTTAGCATATTT  50

seq1  ATTCCTTTACTCCTCCTAGACCCACCATGCCTTCCATCTCCCACAACTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTACTCCTCCTAGACCCACCATGCCTTCCATCTCCCACAACTTC  100

seq1  ATGTCCTCTTTTGATTTATTTTAATAGTTCACCAAGTCGAGTTTTTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCTTTTGATTTATTTTAATAGTTCACCAAGTCGAGTTTTTGCTG  150

seq1  CCCATGTACTTAAAGATGTGGCCTCATGCACTGGAGTGTTGTCACATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTACTTAAAGATGTGGCCTCATGCACTGGAGTGTTGTCACATTAC  200

seq1  CAGAGGCCACACTTGTAACAAAATTGACTTTTCCTCTCTTCATTAGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCACACTTGTAACAAAATTGACTTTTCCTCTCTTCATTAGTGGA  250

seq1  GTGGTCCTGTCAATTTAGGGCCCTTAACACCAAGGACATTAAATTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCTGTCAATTTAGGGCCCTTAACACCAAGGACATTAAATTATATC  300

seq1  TTATAAATCTATAGAAAATAATAACGTTAAAACGTTGCTTAGTATAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATCTATAGAAAATAATAACGTTAAAACGTTGCTTAGTATAAATT  350

seq1  ATAGGATTAGAAGTTAAGAACTCAGAGGATATTTCAGACCCAAATATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATTAGAAGTTAAGAACTCAGAGGATATTTCAGACCCAAATATGTT  400

seq1  TTTACTTTCCCAAATGGGATTAAAATGTGTTAATTGGGCGGTTTCTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTCCCAAATGGGATTAAAATGTGTTAATTGGGCGGTTTCTTTTA  450

seq1  AATCTCAGAAAAAGAACACACACACACCCTGATAATAGTAGAATAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAGAAAAAGAACACACACACACCCTGATAATAGTAGAATAAAAAT  500

seq1  TTTTAGGAAAAATCAATCCAACCAGGAAATAGTGAAGAAAAGTTTGCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAAAAATCAATCCAACCAGGAAATAGTGAAGAAAAGTTTGCAAA  550

seq1  GAACACTACAAAAAATGTTTAATGATTTAATATAAGGGGCAAAAAGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTACAAAAAATGTTTAATGATTTAATATAAGGGGCAAAAAGTTAC  600

seq1  ATTTACACAACTCGGTATCTAGTATACAGAATGGTGACACCAATTAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACACAACTCGGTATCTAGTATACAGAATGGTGACACCAATTAGTAG  650

seq1  TAGAGCTTAAGTATGCTAAATGGGGTCGTAAATGGGTTTAAAACATTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCTTAAGTATGCTAAATGGGGTCGTAAATGGGTTTAAAACATTACA  700

seq1  CACAATATTAACTGTGAAGTGTAGATGATAATTAGTCTGATATTGGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATTAACTGTGAAGTGTAGATGATAATTAGTCTGATATTGGGAAC  750

seq1  ATTTCATGGTGTGTACATGCACCAGCAAATTCTACTGCACTACTGCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATGGTGTGTACATGCACCAGCAAATTCTACTGCACTACTGCATAT  800

seq1  CTATTTACTTTGTTTTTTATTAGGTATTTATTTCATTTACATTTCCAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACTTTGTTTTTTATTAGGTATTTATTTCATTTACATTTCCAATG  850

seq1  CTATCCCAAAAGTTTCCCCACCCGCTCCCC  880
      ||||||||||||||||||||||||||||||
seq2  CTATCCCAAAAGTTTCCCCACCCGCTCCCC  880

seq1: chr15_30188430_30189367
seq2: B6Ng01-013K01.g_68_993 (reverse)

seq1  GATAGATGAGCACACACTGAAGAGAAGAAAGTAGTATACCATGGATAGAT  50
      ||||| |||||| || ||||||  |||||| |||||||||||||||||||
seq2  GATAG-TGAGCA-ACTCTGAAGGAAAGAAA-TAGTATACCATGGATAGAT  47

seq1  AATGTTTTGGAAATAAAGCAATTTCTTTTAGGTAATGTTTATGAACTTGT  100
      |||| |||||||||||||||  ||| ||||||| ||||||||| ||||||
seq2  AATG-TTTGGAAATAAAGCA--TTC-TTTAGGT-ATGTTTATG-ACTTGT  91

seq1  TCCCCACTGCCATTTCCTTCCTGTCTTAGTCAGGGTTTCTATTCCTGCAC  150
      ||||||||| ||||  |||| |||| |||||||||||| |||| | ||||
seq2  TCCCCACTG-CATT--CTTCATGTC-TAGTCAGGGTTT-TATTTCCGCAC  136

seq1  AAACATCATGACCAAGAAACAAGTTGGGGAGGAAAGGGTTTATTCGGCTT  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAACATCATGACCAAGAAACAAGTTGGGGAGGAAAGGGTTAATTCGGCTT  186

seq1  ACACTTCCATACTGCTGTTCATCA-CCAAGGAAG-CCAGGACTGGAACTC  248
      |||||||||||||| ||||||||| ||||||||| |||||||||||||||
seq2  ACACTTCCATACTGATGTTCATCACCCAAGGAAGCCCAGGACTGGAACTC  236

seq1  AAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGAGATGTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGAGATGTTCT  286

seq1  TTACTGGCTTGCCTCACCTGGCTTGCTCAGCCTGCTCTTTTATAGAACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGGCTTGCCTCACCTGGCTTGCTCAGCCTGCTCTTTTATAGAACCA  336

seq1  AGACTACCAGCCCAGAGATGGCACCACCCACAAGGGGCCTGAAACCCTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACCAGCCCAGAGATGGCACCACCCACAAGGGGCCTGAAACCCTTG  386

seq1  ATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAATTGAGAAAATGCCTTACAGTTGGATCTCATGGAGGCATTTCC  436

seq1  TCAACTGAAGCTCCTTTCTCCATAACTCCAGCTGTGTCAAGTTGACACAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTGAAGCTCCTTTCTCCATAACTCCAGCTGTGTCAAGTTGACACAA  486

seq1  AACTAGCCAGTACACTTCCCAAGCTCTATCTTTTTGGGCACAGTGCAGTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCCAGTACACTTCCCAAGCTCTATCTTTTTGGGCACAGTGCAGTG  536

seq1  GGAGATGGGCAATTGCACTAAGTAAGGGTCAAGGCACCACCGTGACTTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGGCAATTGCACTAAGTAAGGGTCAAGGCACCACCGTGACTTTG  586

seq1  TAGCTCAGATTGACTTTCTTTAGCATGATGGAATCATAAATGCCATGGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAGATTGACTTTCTTTAGCATGATGGAATCATAAATGCCATGGGG  636

seq1  GTAGATAGCCATAAAAGGATGTCCCTACTTCCTTATCATCTATGCACCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGCCATAAAAGGATGTCCCTACTTCCTTATCATCTATGCACCAA  686

seq1  ATCAGTAATAAATACTATCAGATTAGGCTATATCACGTATTAGATTTGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAATAAATACTATCAGATTAGGCTATATCACGTATTAGATTTGAG  736

seq1  TCTAAGCAAACAAGAAGGAGAGGACTCAGGTTGGTCTCTGTAGTTTGTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGCAAACAAGAAGGAGAGGACTCAGGTTGGTCTCTGTAGTTTGTGG  786

seq1  CGAGAGGGGGTGGATTGCAGTTGGGGATGGAGCAATATCTGGAAAGCAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGGGGGTGGATTGCAGTTGGGGATGGAGCAATATCTGGAAAGCAAA  836

seq1  CTGAATTGTGCATCACCGTAGCTATGCTTCTGTCCTGAAGGATGGAGCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGTGCATCACCGTAGCTATGCTTCTGTCCTGAAGGATGGAGCCA  886

seq1  TGAGGTCAGGGGAAAGCCAGTAATTGGGGGCACTGAATTC  938
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCAGGGGAAAGCCAGTAATTGGGGGCACTGAATTC  926