This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Result
BAC
Clone Name
B6Ng01-014D03
Chromosome
15 (Build37)
Map Location
53,464,620 - 53,465,742
singlet/doublet
singlet
Overlap gene
Samd12
Upstream gene
Thrap6
,
LOC100039745
,
Ext1
Downstream gene
EG665097
,
EG621631
,
Tnfrsf11b
,
LOC665280
,
EG383032
,
Colec10
,
Mal2
Link
Open Mouse BAC browser
Click to get alignment info.
name
Thrap6
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:69790
MGI:1917040
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100039745
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100039745
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
Ext1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14042
MGI:894663
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Samd12
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:320679
MGI:2444518
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG665097
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:665097
MGI:3647008
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST
name
EG621631
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:621631
MGI:3643637
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins
pseudo
: _no_value
name
Tnfrsf11b
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:18383
MGI:109587
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC665280
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:665280
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins
pseudo
: _no_value
name
EG383032
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:383032
MGI:3644834
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 9 Proteins
name
Colec10
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:239447
MGI:3606482
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Mal2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:105853
MGI:2146021
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Thrap6
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:141801965
GeneID:69790
MGI:1917040
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: thyroid hormone receptor associated protein 6
transcript_id
: NM_027212.2
name
Ext1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:112807208
GeneID:14042
MGI:894663
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: exostoses (multiple) 1
transcript_id
: NM_010162.2
name
Samd12
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:144446081
GeneID:320679
MGI:2444518
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: sterile alpha motif domain containing 12
transcript_id
: NM_177225.3
name
EG665097
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94398631
GeneID:665097
MGI:3647008
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST
product
: predicted gene, EG665097
transcript_id
: XM_975994.1
name
Tnfrsf11b
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:113930715
GeneID:18383
MGI:109587
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
transcript_id
: NM_008764.3
name
EG383032
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:63680668
GeneID:383032
MGI:3644834
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 9 Proteins
product
: predicted gene, EG383032
transcript_id
: XM_356811.3
name
Colec10
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142362070
GeneID:239447
MGI:3606482
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: collectin sub-family member 10
transcript_id
: NM_173422.2
name
Mal2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142388069
GeneID:105853
MGI:2146021
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: mal, T-cell differentiation protein 2
transcript_id
: NM_178920.3
name
Thrap6
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:19882231
CCDS:CCDS27465.1
GeneID:69790
MGI:1917040
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0042802 - identical protein binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]
codon_start
: 1
product
: TRAP/Mediator complex component TRAP25
protein_id
: NP_081488.1
name
Ext1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:112807209
CCDS:CCDS27466.1
GeneID:14042
MGI:894663
definition
GO_component
: GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0030176 - integral to endoplasmic reticulum membrane [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0050508 - glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity [Evidence IDA] [Evidence IEA]; GO:0050509 - N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity [Evidence IDA] [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA]
GO_process
: GO:0007492 - endoderm development [Evidence IMP]; GO:0007369 - gastrulation [Evidence IMP]; GO:0015012 - heparan sulfate proteoglycan biosynthesis [Evidence IDA]; GO:0007498 - mesoderm development [Evidence IMP]
codon_start
: 1
product
: exostosin 1
protein_id
: NP_034292.2
name
Samd12
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:28893263
GeneID:320679
MGI:2444518
definition
codon_start
: 1
product
: sterile alpha motif domain containing 12
protein_id
: NP_796199.1
name
EG665097
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94398632
GeneID:665097
MGI:3647008
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_981088.1
name
Tnfrsf11b
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:113930716
CCDS:CCDS27468.1
GeneID:18383
MGI:109587
definition
GO_component
: GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0006915 - apoptosis [Evidence IEA]; GO:0042489 - negative regulation of odontogenesis (sensu Vertebrata) [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA]
codon_start
: 1
note
: osteoprotegerin; osteoclastogenesis inhibitory factor
product
: tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)
protein_id
: NP_032790.3
name
EG383032
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:63680669
GeneID:383032
MGI:3644834
definition
codon_start
: 1
product
: similar to ribosomal protein S17
protein_id
: XP_356811.3
name
Colec10
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27734138
CCDS:CCDS27469.1
GeneID:239447
MGI:3606482
definition
GO_component
: GO:0005737 - cytoplasm [Evidence IEA]; GO:0005829 - cytosol [Evidence NAS]; GO:0005634 - nucleus [Evidence NAS]
GO_function
: GO:0005537 - mannose binding [Evidence IDA]; GO:0005529 - sugar binding [Evidence IEA]
GO_process
: GO:0006952 - defense response [Evidence NAS]; GO:0009790 - embryonic development [Evidence NAS]; GO:0007157 - heterophilic cell adhesion [Evidence NAS]; GO:0006817 - phosphate transport [Evidence IEA]
codon_start
: 1
exception
: mismatches in translation
note
: collectin-L1
product
: collectin liver 1
protein_id
: NP_775598.1
name
Mal2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:30725780
CCDS:CCDS27470.1
GeneID:105853
MGI:2146021
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
codon_start
: 1
product
: MAL2 proteolipid protein
protein_id
: NP_849251.1
name
LOC100039745
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039745
definition
number
: 1
pseudo
: _no_value
name
LOC100039745
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039745
definition
number
: 2
pseudo
: _no_value
name
LOC100039745
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:100039745
definition
number
: 3
pseudo
: _no_value
name
EG621631
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:621631
definition
number
: 5
pseudo
: _no_value
name
EG621631
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:621631
definition
number
: 4
pseudo
: _no_value
name
EG621631
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:621631
definition
number
: 3
pseudo
: _no_value
name
EG621631
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:621631
definition
number
: 2
pseudo
: _no_value
name
EG621631
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:621631
definition
number
: 1
pseudo
: _no_value
name
LOC665280
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665280
definition
number
: 3
pseudo
: _no_value
name
LOC665280
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665280
definition
number
: 2
pseudo
: _no_value
name
LOC665280
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:665280
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-352F22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-471P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-500F05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-383O18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-530A19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470H21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384M07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-237L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-057B04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278L02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-372C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-411F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-088M06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-123L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-129J06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196G16
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-208M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368A20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384H15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-471L18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-478D23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-422N15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-452J24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-050I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139G03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346J15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-443M08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-271I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-266N05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-142B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-205O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-507M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-374N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379M22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486B06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-305B09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-305B08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359C19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-297O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435O24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-156M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374L04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-048J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513I14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-181K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-359D16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411O20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-458K15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-413I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-477D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-111C04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231L04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-110N15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-235M05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-305B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-085C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-185N22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-539L22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-415L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-447H17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-299C01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-499F22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-325B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-521H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-438N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-055J16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434F03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-508G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-495D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-152E13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-359I17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-092G22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114H11
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-434P17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-461K09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-125J15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-249D16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-206D11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-084G15
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-281M02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-281M12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-228M20
singlet/doublet
singlet
plural/unique
unique
clone name
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B6Ng01-235B23
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B6Ng01-205I04
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B6Ng01-007O12
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