BAC Information

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BAC

Clone NameB6Ng01-015C12
Chromosome15 (Build37)
Map Location 16,999,063 - 17,123,584
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040087, LOC624183, LOC100040119, Cdh9
Downstream geneLOC100040162, LOC666835
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015C12.bB6Ng01-015C12.g
ACCDH849493DH849494
length1,059787
definitionDH849493|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C12, 5' end.DH849494|Mus musculus domesticus DNA, BAC clone: B6Ng01-015C12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,122,528 - 17,123,584)(16,999,063 - 16,999,849)
sequence
gaattcatctagctacaagcaaattcttgtaacttattttcaaaatattt
taataatttccatcttgggccatttttgtcaggtcttaaatattttggcc
aatcaatgattcatatgccatgtttttaaaaagacatttatttttagttt
tgtgtataaatggttttgcttgattgtatgtttatgaagcatgttcattc
ctagtacctctgtagctcagcagagggtatctggtaccatgaacctataa
ttatggattctgtggaagccacagtaattttgacaatggaacctggatct
acagcaaaagcaagtattcttaatcaccgagctatcactgcagttctatg
tcctgtgttattatggttatataagttgaggaaaaaaattgtgctagaaa
acttttaccgcaaatttaaagttttacgagttaatgaaagtgaattgtat
gaaggaatatccctgaaattgttttaaaaaatcctttatttccaattagt
tactcattgatatccaatgtacatacaataatttgaatgtgatttcccag
aaaatagggtttactctcatggagtaagtgaatttctttgaagtaaacaa
tggttcattttggatcttagagccctgaccactacatttgataatatatt
atatattatgtatttgttaatatattctatccctcatgaaataaaatttt
attcttttgtctcttataaactcagtaaacttgagaacttttagatttta
ctaatgaagtgaaatttcaggaaaaaaaaatagctgctactgaaagcttt
gtaatccaatatagtatagttcaaaaacccttcagtctacttcaacctgt
aacgactggagagctttaaggtcatagcactgatccaaccatatattttg
tagcaatcctcactctaagatttattagcaatcaacaatgacccaaatac
tacctctacttcagtgaacagaatgaagaatccggccgctctccgggaac
ttgtagaaactaagaaaagcaattaagtgaacacaggaatgctttgaata
gaggaagag
gaattcttgtgctgactttcttcagtgatggactgctatgtggaagtata
agaaataaatcctttcttccctactctgcctttgaagatgtgatacatcg
cagaaatagtaactctaagcacaacaaataaagagggattgcgatgggaa
gaactaataataaagaggaagtgtacatgaaaatgacacaaggagaatgt
tactttaaatatcaattgcaaatattattaatgagttaaagacagaaagt
cttcattttgtgtatgtttcatttgtggctttactataactcatcagaaa
agattagaaaatagcccacaaacatgaaaatgttggtatcagtaagatta
ttgggggctggaaataattttatttggcctccatgcctataaaaatatct
atcctctagaatatatattggaaaagtataacttactgaactttttttta
aatcagttttcaggttctttttctgtttgaaaaaatcagttttgcaaata
gagttttgttctcaataataaaactagacaggattaaggatggttggtta
gaccatttatgatcaaaaaacgacacttcaatacatgactgtactctcta
cccactgattcaattatgtctttgaatttaccacctgagtcagccaattt
aaacaatttaactgtggtcctcttgctccatcaagtggtaaatataatga
aacatgaaaatttgtatggtaattcaggaaaaaaaacccaaaggtaccat
gctactaacgacagagtataaacggggggaggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_17122528_17123584
seq2: B6Ng01-015C12.b_45_1103 (reverse)

seq1  CTCTT-CTCTAATCAAAGCATT-CTGTGTTCACTTAATTGCTTTTC-TAG  47
      ||||| ||||| |||||||||| ||||||||||||||||||||||| |||
seq2  CTCTTCCTCTATTCAAAGCATTCCTGTGTTCACTTAATTGCTTTTCTTAG  50

seq1  TTTCCTACAAGTTCCCGGAGAGCGG-CGGATTCTTCATTCTGTTCACTGA  96
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTT-CTACAAGTTCCCGGAGAGCGGCCGGATTCTTCATTCTGTTCACTGA  99

seq1  AGTTAGAGGTAGTATTTGGGTCATTGTTGATTGCTAATAAATCTTAGAGT  146
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TAGAGGTAGTATTTGGGTCATTGTTGATTGCTAATAAATCTTAGAGT  148

seq1  GAGGATTTGCTACAAAATATATGGTTGGATCAGTGCTATGACCTT-AAGC  195
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGGA-TTGCTACAAAATATATGGTTGGATCAGTGCTATGACCTTAAAGC  197

seq1  TCTCCAGTCGTTACAGGTTGAAGTAGACTGAAGGGTTTTTGAACTATACT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGTCGTTACAGGTTGAAGTAGACTGAAGGGTTTTTGAACTATACT  247

seq1  ATATTGGATTACAAAGCTTTCAGTAGCAGCTATTTTTTTTTCCTGAAATT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGATTACAAAGCTTTCAGTAGCAGCTATTTTTTTTTCCTGAAATT  297

seq1  TCACTTCATTAGTAAAATCTAAAAGTTCTCAAGTTTACTGAGTTTATAAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTCATTAGTAAAATCTAAAAGTTCTCAAGTTTACTGAGTTTATAAG  347

seq1  AGACAAAAGAATAAAATTTTATTTCATGAGGGATAGAATATATTAACAAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAAAGAATAAAATTTTATTTCATGAGGGATAGAATATATTAACAAA  397

seq1  TACATAATATATAATATATTATCAAATGTAGTGGTCAGGGCTCTAAGATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATATATAATATATTATCAAATGTAGTGGTCAGGGCTCTAAGATC  447

seq1  CAAAATGAACCATTGTTTACTTCAAAGAAATTCACTTACTCCATGAGAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGAACCATTGTTTACTTCAAAGAAATTCACTTACTCCATGAGAGT  497

seq1  AAACCCTATTTTCTGGGAAATCACATTCAAATTATTGTATGTACATTGGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTATTTTCTGGGAAATCACATTCAAATTATTGTATGTACATTGGA  547

seq1  TATCAATGAGTAACTAATTGGAAATAAAGGATTTTTTAAAACAATTTCAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATGAGTAACTAATTGGAAATAAAGGATTTTTTAAAACAATTTCAG  597

seq1  GGATATTCCTTCATACAATTCACTTTCATTAACTCGTAAAACTTTAAATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTCCTTCATACAATTCACTTTCATTAACTCGTAAAACTTTAAATT  647

seq1  TGCGGTAAAAGTTTTCTAGCACAATTTTTTTCCTCAACTTATATAACCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTAAAAGTTTTCTAGCACAATTTTTTTCCTCAACTTATATAACCAT  697

seq1  AATAACACAGGACATAGAACTGCAGTGATAGCTCGGTGATTAAGAATACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACACAGGACATAGAACTGCAGTGATAGCTCGGTGATTAAGAATACT  747

seq1  TGCTTTTGCTGTAGATCCAGGTTCCATTGTCAAAATTACTGTGGCTTCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTGCTGTAGATCCAGGTTCCATTGTCAAAATTACTGTGGCTTCCA  797

seq1  CAGAATCCATAATTATAGGTTCATGGTACCAGATACCCTCTGCTGAGCTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCATAATTATAGGTTCATGGTACCAGATACCCTCTGCTGAGCTA  847

seq1  CAGAGGTACTAGGAATGAACATGCTTCATAAACATACAATCAAGCAAAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTACTAGGAATGAACATGCTTCATAAACATACAATCAAGCAAAAC  897

seq1  CATTTATACACAAAACTAAAAATAAATGTCTTTTTAAAAACATGGCATAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACACAAAACTAAAAATAAATGTCTTTTTAAAAACATGGCATAT  947

seq1  GAATCATTGATTGGCCAAAATATTTAAGACCTGACAAAAATGGCCCAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTGATTGGCCAAAATATTTAAGACCTGACAAAAATGGCCCAAGA  997

seq1  TGGAAATTATTAAAATATTTTGAAAATAAGTTACAAGAATTTGCTTGTAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTATTAAAATATTTTGAAAATAAGTTACAAGAATTTGCTTGTAG  1047

seq1  CTAGATGAATTC  1057
      ||||||||||||
seq2  CTAGATGAATTC  1059

seq1: chr15_16999063_16999849
seq2: B6Ng01-015C12.g_69_855

seq1  GAATTCTTGTGCTGACTTTCTTCAGTGATGGACTGCTATGTGGAAGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTGCTGACTTTCTTCAGTGATGGACTGCTATGTGGAAGTATA  50

seq1  AGAAATAAATCCTTTCTTCCCTACTCTGCCTTTGAAGATGTGATACATCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAATCCTTTCTTCCCTACTCTGCCTTTGAAGATGTGATACATCG  100

seq1  CAGAAATAGTAACTCTAAGCACAACAAATAAAGAGGGATTGCGATGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATAGTAACTCTAAGCACAACAAATAAAGAGGGATTGCGATGGGAA  150

seq1  GAACTAATAATAAAGAGGAAGTGTACATGAAAATGACACAAGGAGAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAATAATAAAGAGGAAGTGTACATGAAAATGACACAAGGAGAATGT  200

seq1  TACTTTAAATATCAATTGCAAATATTATTAATGAGTTAAAGACAGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAAATATCAATTGCAAATATTATTAATGAGTTAAAGACAGAAAGT  250

seq1  CTTCATTTTGTGTATGTTTCATTTGTGGCTTTACTATAACTCATCAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTTTGTGTATGTTTCATTTGTGGCTTTACTATAACTCATCAGAAA  300

seq1  AGATTAGAAAATAGCCCACAAACATGAAAATGTTGGTATCAGTAAGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGAAAATAGCCCACAAACATGAAAATGTTGGTATCAGTAAGATTA  350

seq1  TTGGGGGCTGGAAATAATTTTATTTGGCCTCCATGCCTATAAAAATATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGCTGGAAATAATTTTATTTGGCCTCCATGCCTATAAAAATATCT  400

seq1  ATCCTCTAGAATATATATTGGAAAAGTATAACTTACTGAACTTTTTTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTAGAATATATATTGGAAAAGTATAACTTACTGAACTTTTTTTTA  450

seq1  AATCAGTTTTCAGGTTCTTTTTCTGTTTGAAAAAATCAGTTTTGCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTTTTCAGGTTCTTTTTCTGTTTGAAAAAATCAGTTTTGCAAATA  500

seq1  GAGTTTTGTTCTCAATAATAAAACTAGACAGGATTAAGGATGGTTGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGTTCTCAATAATAAAACTAGACAGGATTAAGGATGGTTGGTTA  550

seq1  GACCATTTATGATCAAAAAACGACACTTCAATACATGACTGTACTCTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTATGATCAAAAAACGACACTTCAATACATGACTGTACTCTCTA  600

seq1  CCCACTGATTCAATTATGTCTTTGAATTTACCACCTGAGTCAGCCAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGATTCAATTATGTCTTTGAATTTACCACCTGAGTCAGCCAATTT  650

seq1  AAACAATTTAACTGTGGTCCTCTTGCTCCATCAAGTGGTAAATATAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTTAACTGTGGTCCTCTTGCTCCATCAAGTGGTAAATATAATGA  700

seq1  AACATGAAAATTTGTATGGTAATTCAGGAAAAAAAACCCAAAGGTACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAAAATTTGTATGGTAATTCAGGAAAAAAAACCCAAAGGTACCAT  750

seq1  GCTACTAACGACAGAGTATAAACGGGGGGAGGGGGGG  787
      |||||||||||||||||||||||||||||||||||||
seq2  GCTACTAACGACAGAGTATAAACGGGGGGAGGGGGGG  787