BAC Information

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BAC

Clone NameB6Ng01-016A11
Chromosome15 (Build37)
Map Location 75,658,633 - 75,810,770
singlet/doubletdoublet
Overlap geneZc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik
Upstream geneCyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa
Downstream geneMapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016A11.bB6Ng01-016A11.g
ACCDH850122DH850123
length1,1271,143
definitionDH850122|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A11, 5' end.DH850123|Mus musculus domesticus DNA, BAC clone: B6Ng01-016A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,809,636 - 75,810,770)(75,658,633 - 75,659,769)
sequence
gaattcccattgccacccatctagatgaacagggatgcatgttatatatt
tggtactttcagccatccgggattctgttggagacagttatgccccttaa
ttttaaatatatccctgtgtttactgaataggactttgacctgttttctt
ccggtgctgggtgttgaacccagggctacctcctgagctacagcccaagc
cctgtcccaactttcttcaagacatgattaaaattaggaaatgcaccttg
gagaaaatactgtaaactaaatcatactggccaaattgtccctgtggtgt
ctgtagctagctatggatcttacctgggtcacatcttacattccattgtg
ctggtctgtcctttcctttatagaaagggtctgtataggtcaggctggcc
ttgaatccaagagatcctcctgcctctgtctcttcagtgctgagattaaa
ggcatccaccaccacctcagccccgttgtcttgtctttttttttttaaac
ttctttttaaagatttatgtatatgagtgcactgtaactgtcttcagaca
caccagaagagggtgttgggtcccattacagatggttgcgagccaccacg
tggtcaccagggattgaactcaggaccactggaagagcagtcagtgctct
taaccgctgatccatctctccagccctctttgtcttaatgtacaagacca
gtcgttagagcactccttaactgagttttggagtctgttggctttgagca
cctttcctgtccaggaagtccagggcagttgacacctcctgacccagggt
gcaagatgagggagcccacagccttggtacttctgtcattgccttgggga
tcttgtgttcagggacacaggcatcaacagaaatcccatggacgttctac
ctgtttggaccagggtaggctggctagacagttgctagaactttgatgca
gctatttctgggacagatgggatgggagtagcaaagtagaggtcacctca
cccagagatcaaattaaagaatttatttgcctggtggtggtggccttgtg
cctttattccagcactccgggagcaaggctggtggttctctctgagttga
agcatcgggctcacagacgcattgcaa
gaattctgcaggaagaacaccctttctctatttagtgtccttgaccagag
ggaccaggtcaggtcttttcactgagtggaggcaaaccaggaaggctccc
tggccagaggccaagaggaaaccctgcccatcctagaacattgtgtccca
gctacccagctgcttccatgcccagctgtcctaagcagaaagaaattcct
cctggagtgctctccagcccatcatgagcacacccctctgaggcagacag
cttccagcatcagtgcatgggctcatgtctctgagcaccaagcagtgctg
ctgcccctggctctgcatggctccagagggaaggttctccccacctatgg
acaaggagacctgagaagagcccttgagcagcctaagtcatgagcgggtg
acccaaaccaggttctctggcacactgtgccatcaccgttctccatcatg
tgaaacatcttgacttggggattcagagggttgtctaaatccatacatca
tggtctgccaaatccatgcgagacacctaggttctagccccaaatgccat
aagaaataatactgggcagggacctactgtagacacagtacacagacaaa
gcagcactcacaggaacaagctgggtggagctcatcaagtgcctctccca
accagaggggtgtgttctgggctcacagagtactgtggcctgccccatta
cagtgagattgagtacattcctaactaagaccaccagccacccgaggact
agccaacaaaaagaggcttttggaaagcccacttggaatgcccagcacag
gagagccatacactaaggctagctcatgggctgtgtcctggcccctgact
cttttcccacactcataacacaggtttggatatgggctcctttcctggcc
caccttaaaacctgttactatgtccttgatccctgcgagccaccacaaac
tggttctaacttccaccttaagggtgtttgctacagctggcacccaccca
ctggccagttacaaaacatgggtggagtacacttaaactgttatgcccat
gctgctgttaagccttgcttacctggctggaggaccaatccaggcatgtg
tatgcgtctagaacagtttcttatgctcggtctctgagaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75809636_75810770
seq2: B6Ng01-016A11.b_41_1167 (reverse)

seq1  TTGCAATGCACTCTGTAGACCACGATGGCTTCAAACTCAGAGAGACCCAC  50
      |||||||||  ||||| || | |||| ||||| |||||||||||| ||||
seq2  TTGCAATGC-GTCTGT-GAGCCCGAT-GCTTC-AACTCAGAGAGAACCAC  46

seq1  CAGCCTTTGCCTCCCGAGTGCTGGGATTAAAGGCACAA-GCCACCACCAC  99
      ||||| ||||  || ||||||| ||| ||||||||||| |||||||||||
seq2  CAGCC-TTGCTCCCGGAGTGCT-GGAATAAAGGCACAAGGCCACCACCAC  94

seq1  CAGGCAAATTAAATTTCTTTAATTTGATCTCTTGGGTGA-GTGACCTCTA  148
      |||||||||  || ||||||||||||||||| ||||||| ||||||||||
seq2  CAGGCAAAT--AAATTCTTTAATTTGATCTC-TGGGTGAGGTGACCTCTA  141

seq1  CTTTGCTACTCCCATCCAATCTTGTCCCAGAAATAGCTGCATCAAAGTTC  198
      ||||||||||||||||| ||| ||||||||||||||||||||||||||||
seq2  CTTTGCTACTCCCATCCCATC-TGTCCCAGAAATAGCTGCATCAAAGTTC  190

seq1  TAGCAACTGTCTAGCCAGCCTACCCTGGTCCAAACAGGTAGAACGTCCAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACTGTCTAGCCAGCCTACCCTGGTCCAAACAGGTAGAACGTCCAT  240

seq1  GGGATTTCTGTTGATGCCTGTGTCCCTGAACACAAGATCCCCAAGGCAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTCTGTTGATGCCTGTGTCCCTGAACACAAGATCCCCAAGGCAAT  290

seq1  GACAGAAGTACCAAGGCTGTGGGCTCCCTCATCTTGCACCCTGGGTCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGTACCAAGGCTGTGGGCTCCCTCATCTTGCACCCTGGGTCAGG  340

seq1  AGGTGTCAACTGCCCTGGACTTCCTGGACAGGAAAGGTGCTCAAAGCCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTCAACTGCCCTGGACTTCCTGGACAGGAAAGGTGCTCAAAGCCAA  390

seq1  CAGACTCCAAAACTCAGTTAAGGAGTGCTCTAACGACTGGTCTTGTACAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCCAAAACTCAGTTAAGGAGTGCTCTAACGACTGGTCTTGTACAT  440

seq1  TAAGACAAAGAGGGCTGGAGAGATGGATCAGCGGTTAAGAGCACTGACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAAAGAGGGCTGGAGAGATGGATCAGCGGTTAAGAGCACTGACTG  490

seq1  CTCTTCCAGTGGTCCTGAGTTCAATCCCTGGTGACCACGTGGTGGCTCGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGTGGTCCTGAGTTCAATCCCTGGTGACCACGTGGTGGCTCGC  540

seq1  AACCATCTGTAATGGGACCCAACACCCTCTTCTGGTGTGTCTGAAGACAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTGTAATGGGACCCAACACCCTCTTCTGGTGTGTCTGAAGACAG  590

seq1  TTACAGTGCACTCATATACATAAATCTTTAAAAAGAAGTTTAAAAAAAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGCACTCATATACATAAATCTTTAAAAAGAAGTTTAAAAAAAAA  640

seq1  AAGACAAGACAACGGGGCTGAGGTGGTGGTGGATGCCTTTAATCTCAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGACAACGGGGCTGAGGTGGTGGTGGATGCCTTTAATCTCAGCA  690

seq1  CTGAAGAGACAGAGGCAGGAGGATCTCTTGGATTCAAGGCCAGCCTGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGACAGAGGCAGGAGGATCTCTTGGATTCAAGGCCAGCCTGACC  740

seq1  TATACAGACCCTTTCTATAAAGGAAAGGACAGACCAGCACAATGGAATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGACCCTTTCTATAAAGGAAAGGACAGACCAGCACAATGGAATGT  790

seq1  AAGATGTGACCCAGGTAAGATCCATAGCTAGCTACAGACACCACAGGGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTGACCCAGGTAAGATCCATAGCTAGCTACAGACACCACAGGGAC  840

seq1  AATTTGGCCAGTATGATTTAGTTTACAGTATTTTCTCCAAGGTGCATTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGCCAGTATGATTTAGTTTACAGTATTTTCTCCAAGGTGCATTTC  890

seq1  CTAATTTTAATCATGTCTTGAAGAAAGTTGGGACAGGGCTTGGGCTGTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTAATCATGTCTTGAAGAAAGTTGGGACAGGGCTTGGGCTGTAG  940

seq1  CTCAGGAGGTAGCCCTGGGTTCAACACCCAGCACCGGAAGAAAACAGGTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGTAGCCCTGGGTTCAACACCCAGCACCGGAAGAAAACAGGTC  990

seq1  AAAGTCCTATTCAGTAAACACAGGGATATATTTAAAATTAAGGGGCATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCTATTCAGTAAACACAGGGATATATTTAAAATTAAGGGGCATAA  1040

seq1  CTGTCTCCAACAGAATCCCGGATGGCTGAAAGTACCAAATATATAACATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCAACAGAATCCCGGATGGCTGAAAGTACCAAATATATAACATG  1090

seq1  CATCCCTGTTCATCTAGATGGGTGGCAATGGGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGTTCATCTAGATGGGTGGCAATGGGAATTC  1127

seq1: chr15_75658633_75659769
seq2: B6Ng01-016A11.g_71_1213

seq1  GAATTCTGCAGGAAGAACACCCTTTCTCTATTTAGTGTCCTTGACCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCAGGAAGAACACCCTTTCTCTATTTAGTGTCCTTGACCAGAG  50

seq1  GGACCAGGTCAGGTCTTTTCACTGAGTGGAGGCAAACCAGGAAGGCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGGTCAGGTCTTTTCACTGAGTGGAGGCAAACCAGGAAGGCTCCC  100

seq1  TGGCCAGAGGCCAAGAGGAAACCCTGCCCATCCTAGAACATTGTGTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGAGGCCAAGAGGAAACCCTGCCCATCCTAGAACATTGTGTCCCA  150

seq1  GCTACCCAGCTGCTTCCATGCCCAGCTGTCCTAAGCAGAAAGAAATTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCCAGCTGCTTCCATGCCCAGCTGTCCTAAGCAGAAAGAAATTCCT  200

seq1  CCTGGAGTGCTCTCCAGCCCATCATGAGCACACCCCTCTGAGGCAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTGCTCTCCAGCCCATCATGAGCACACCCCTCTGAGGCAGACAG  250

seq1  CTTCCAGCATCAGTGCATGGGCTCATGTCTCTGAGCACCAAGCAGTGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGCATCAGTGCATGGGCTCATGTCTCTGAGCACCAAGCAGTGCTG  300

seq1  CTGCCCCTGGCTCTGCATGGCTCCAGAGGGAAGGTTCTCCCCACCTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCTGGCTCTGCATGGCTCCAGAGGGAAGGTTCTCCCCACCTATGG  350

seq1  ACAAGGAGACCTGAGAAGAGCCCTTGAGCAGCCTAAGTCATGAGCGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGACCTGAGAAGAGCCCTTGAGCAGCCTAAGTCATGAGCGGGTG  400

seq1  ACCCAAACCAGGTTCTCTGGCACACTGTGCCATCACCGTTCTCCATCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACCAGGTTCTCTGGCACACTGTGCCATCACCGTTCTCCATCATG  450

seq1  TGAAACATCTTGACTTGGGGATTCAGAGGGTTGTCTAAATCCATACATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACATCTTGACTTGGGGATTCAGAGGGTTGTCTAAATCCATACATCA  500

seq1  TGGTCTGCCAAATCCATGCGAGACACCTAGGTTCTAGCCCCAAATGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGCCAAATCCATGCGAGACACCTAGGTTCTAGCCCCAAATGCCAT  550

seq1  AAGAAATAATACTGGGCAGGGACCTACTGTAGACACAGTACACAGACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAATACTGGGCAGGGACCTACTGTAGACACAGTACACAGACAAA  600

seq1  GCAGCACTCACAGGAACAAGCTGGGTGGAGCTCATCAAGTGCCTCTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTCACAGGAACAAGCTGGGTGGAGCTCATCAAGTGCCTCTCCCA  650

seq1  ACCAGAGGGGTGTGTTCTGGGCTCACAGAGTACTGTGGCCTGCCCCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGGGTGTGTTCTGGGCTCACAGAGTACTGTGGCCTGCCCCATTA  700

seq1  CAGTGAGATTGAGTACATTCCTAACTAAGACCACCAGCCACCCGAGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGATTGAGTACATTCCTAACTAAGACCACCAGCCACCCGAGGACT  750

seq1  AGCCAACAAAAAGAGGCTTTTGGAAAGCCCACTTGGAATGCCCAGCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACAAAAAGAGGCTTTTGGAAAGCCCACTTGGAATGCCCAGCACAG  800

seq1  GAGAGCCATACACTAAGGCTAGCTCATGGGCTGTGTCCTGGCCCCTGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCCATACACTAAGGCTAGCTCATGGGCTGTGTCCTGGCCCCTGACT  850

seq1  C-TTTCCCACACTCATAACACAGGTTTGGATATGGGCTCCTTTCCTGGCC  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCCACACTCATAACACAGGTTTGGATATGGGCTCCTTTCCTGGCC  900

seq1  CACCTAAAACCCTGTTACTATGTCC-TGATCCCTGCGAGCCACCACAAAC  948
      ||||| ||| ||||||||||||||| ||||||||||||||||||||||||
seq2  CACCTTAAAACCTGTTACTATGTCCTTGATCCCTGCGAGCCACCACAAAC  950

seq1  TGGTTCTAAC-TCCACCTAAGGGGTGTTTGCCTACAGCTGGCACCCACCC  997
      |||||||||| ||||||| | ||||||||| |||||||||||||||||||
seq2  TGGTTCTAACTTCCACCTTAAGGGTGTTTG-CTACAGCTGGCACCCACCC  999

seq1  ACT-GCCAGGTACAAAACATGGGT-GAGTACAC-TAAACTG-TATGCGCA  1043
      ||| ||||| |||||||||||||| |||||||| ||||||| ||||| ||
seq2  ACTGGCCAGTTACAAAACATGGGTGGAGTACACTTAAACTGTTATGCCCA  1049

seq1  TGCTGCTG-TAGGCCTTGCTGACTGTGCTTGAGGA-CAAACCAGGCCATG  1091
      |||||||| || |||||||| ||   ||| ||||| ||| ||||| ||||
seq2  TGCTGCTGTTAAGCCTTGCTTACCTGGCTGGAGGACCAATCCAGG-CATG  1098

seq1  GGGATAGCGTCTAGGACAG-TTCTTATGTCATGTTCTCTGAGAAAAC  1137
       | || |||||||| |||| |||||||| |  | |||||||||||||
seq2  TGTAT-GCGTCTAGAACAGTTTCTTATG-CTCGGTCTCTGAGAAAAC  1143