BAC Information

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BAC

Clone NameB6Ng01-016O14
Chromosome15 (Build37)
Map Location 50,276,869 - 50,277,961
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016O14.bB6Ng01-016O14.g
ACCDH850741DH850742
length1,2531,076
definitionDH850741|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O14, 5' end.DH850742|Mus musculus domesticus DNA, BAC clone: B6Ng01-016O14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatcagacctttaaagaagacctaataccaatactcttatctat
tccacaaaatagaaaagaagtccactacccaactcattctatgaagacaa
aattatacttatacctaaaccacacaatgaccaaacaaagaggacttcag
accatctcccttatgaacattgatgccaaaatactaaataaaattcttgc
caactgaattcaagaacacaccaaaacgatcattcatcacactcaagtag
gcttcatcccatgtaggaatggttcaatatggaaatccatcaacataatc
tactacataaacaaactaaaaaacaaacaaacaaacaaacaacacatgat
catttcattagatgctgaaaaagcatttgaaaaatttaatatccctgaat
gttaaaagtcttggaaagatcagaaattcaaggcctatacataaacataa
taaaagcaatatatagcaaaccagtagccaacatcaaactgaatggagag
aaacttgaagcaattccactaaaatcagggactagacaaggctggccatt
ctccccctatctattcaacacagtacttgaaattctaggtagagcaatta
gaaaacaaaaggaggtcaaagggatacaaatttgcaaggaagaggtcaaa
atatccctatttggagatgatatgatcttgtacttaagtgacccaaaaag
ttccaccagagaactcctaaagctgataaacaacctcaggaaagtggatg
gaaactcaaaccaatcaatagccttcctctactcaacagataaacagtct
cagaaagaaattaggaaattgacacccttcacaaaagtcccaaatattac
ataccttggtgtgattgtaatcaagcaagtgaaagatctgtaggacaaga
acttcaagtctctgaagaaagaaatcaaaaaagatctcagaagatagaaa
aatctcccatactcatggactggcaggattaatacagtaaaaatagccat
cttaccgaaagcatcttacagattcaatgcagttcccatcgaagttcaag
tcattcttcatggagtagaaagaagcaatttgcaattcataggaataata
aataacccatcatagcaaactattctcagcataaaagaacttcttgagga
atcacatctgacctcaagcgtgattacagaacaatctgaaaactgctgga
atttggtcagagacagaacagaaaaatctacacggtattggtacgcgtga
gac
gaattcctcttctactgaaaatgtagagctaaaacagagttggatgctga
taaacacaatatgggtattcggtgatatagacacagagagtagacctaac
agttcatcttccagggctctaaactcactgttgttgttaatatttgcaat
actttcatattctctgttttcttcatgaattctcctttaccacattagta
tacataacattaaattaattctgttctttaaatttttaaaaattttaatt
ctttacatgcatgcaagcttacactccatggcatgtgtatgggagtcaaa
gaactttgtagagccaatcctctctatttacttttatatgggtcctcaaa
attgggtttctcagatttctccagtaagcacctttccccactatgccacc
tcatccacctgaagctattcttaataagctgtctaacttaccatttatag
tctgataaaatgtatgtacttaatgagttgtggagcttgtatatacttac
catatttcattagcctatatctggttcgctgaagaatattttctgctatg
cattagccatgttttgtttttatgtttcaacacatttattagttacatag
atgtaaacactgtccacatttttacagtgcagtgaattatagatttggct
tatcttataattattttagatctttatgaattaaatgttaaaggattttt
ataaccacaattttactaatagaaataagtaaacacttgagaaagaatag
ccttcaaaactctgactttctctttgtcttgtccaaaatacaatttgcaa
aacaagaaaatcaagaagagggaagaccaatgggtggatacttcattcct
ccttagaagagggaacaaatactcatgataggagttacagagacaacgtt
tggagctaagacgaaacgatggactatccagagacttcccacccgaggat
ccatcccataaacaccaccaaatcagacattgcatatgccagcagattgc
tgaagtatagctgtctcatatgagctatgcaatgctgcaaataagaagtg
atgctcacagtcgtcatagatggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50276869_50277961
seq2: B6Ng01-016O14.g_68_1143 (reverse)

seq1  GTTCCATCTTATAGACGACTGTGAGCATCCACTTCTGTATTTGCCAGGCA  50
      |||||||| ||| ||||||||||||||| ||||||| |||||| |||   
seq2  GTTCCATC-TAT-GACGACTGTGAGCAT-CACTTCT-TATTTG-CAG--C  43

seq1  ATGGCATAGCCTCATATGAGACAGCTATAACTTCAGCAAAATCTTGCTGG  100
      || |||||| |||||||||||||||||| ||||||||  |||| ||||||
seq2  ATTGCATAG-CTCATATGAGACAGCTAT-ACTTCAGC--AATC-TGCTGG  88

seq1  CATATGCAAATGTCTGGATTTGGTGGTTGTTTATGGGATGGATCCTCGGG  150
      ||||||| ||||||| |||||||||| |||||||||||||||||||||||
seq2  CATATGC-AATGTCT-GATTTGGTGG-TGTTTATGGGATGGATCCTCGGG  135

seq1  TGGGGAAGTCTCTGGATAGTCCATCGTTTCGTCTTAGCTCCAAACGTTGT  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GGGAAGTCTCTGGATAGTCCATCGTTTCGTCTTAGCTCCAAACGTTGT  184

seq1  CTCTGTAACTCCTATCATGAGTATTTTGTTCCCTCTTCTAAGGAGGAATG  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCTGTAACTCCTATCATGAGTA-TTTGTTCCCTCTTCTAAGGAGGAATG  233

seq1  AAGTATCCACCCATTGGTCTTCCCTCTTCTTGATTTTCTTGTTTTGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCCACCCATTGGTCTTCCCTCTTCTTGATTTTCTTGTTTTGCAAA  283

seq1  TTGTATTTTGGACAAGACAAAGAGAAAGTCAGAGTTTTGAAGGCTATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTGGACAAGACAAAGAGAAAGTCAGAGTTTTGAAGGCTATTCT  333

seq1  TTCTCAAGTGTTTACTTATTTCTATTAGTAAAATTGTGGTTATAAAAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGTGTTTACTTATTTCTATTAGTAAAATTGTGGTTATAAAAATC  383

seq1  CTTTAACATTTAATTCATAAAGATCTAAAATAATTATAAGATAAGCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACATTTAATTCATAAAGATCTAAAATAATTATAAGATAAGCCAAA  433

seq1  TCTATAATTCACTGCACTGTAAAAATGTGGACAGTGTTTACATCTATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATTCACTGCACTGTAAAAATGTGGACAGTGTTTACATCTATGTA  483

seq1  ACTAATAAATGTGTTGAAACATAAAAACAAAACATGGCTAATGCATAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATAAATGTGTTGAAACATAAAAACAAAACATGGCTAATGCATAGCA  533

seq1  GAAAATATTCTTCAGCGAACCAGATATAGGCTAATGAAATATGGTAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTCTTCAGCGAACCAGATATAGGCTAATGAAATATGGTAAGTA  583

seq1  TATACAAGCTCCACAACTCATTAAGTACATACATTTTATCAGACTATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAGCTCCACAACTCATTAAGTACATACATTTTATCAGACTATAAA  633

seq1  TGGTAAGTTAGACAGCTTATTAAGAATAGCTTCAGGTGGATGAGGTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGTTAGACAGCTTATTAAGAATAGCTTCAGGTGGATGAGGTGGCA  683

seq1  TAGTGGGGAAAGGTGCTTACTGGAGAAATCTGAGAAACCCAATTTTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGGGAAAGGTGCTTACTGGAGAAATCTGAGAAACCCAATTTTGAGG  733

seq1  ACCCATATAAAAGTAAATAGAGAGGATTGGCTCTACAAAGTTCTTTGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATATAAAAGTAAATAGAGAGGATTGGCTCTACAAAGTTCTTTGACT  783

seq1  CCCATACACATGCCATGGAGTGTAAGCTTGCATGCATGTAAAGAATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACACATGCCATGGAGTGTAAGCTTGCATGCATGTAAAGAATTAAA  833

seq1  ATTTTTAAAAATTTAAAGAACAGAATTAATTTAATGTTATGTATACTAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAAATTTAAAGAACAGAATTAATTTAATGTTATGTATACTAAT  883

seq1  GTGGTAAAGGAGAATTCATGAAGAAAACAGAGAATATGAAAGTATTGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAAGGAGAATTCATGAAGAAAACAGAGAATATGAAAGTATTGCAA  933

seq1  ATATTAACAACAACAGTGAGTTTAGAGCCCTGGAAGATGAACTGTTAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAACAACAACAGTGAGTTTAGAGCCCTGGAAGATGAACTGTTAGGT  983

seq1  CTACTCTCTGTGTCTATATCACCGAATACCCATATTGTGTTTATCAGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCTCTGTGTCTATATCACCGAATACCCATATTGTGTTTATCAGCAT  1033

seq1  CCAACTCTGTTTTAGCTCTACATTTTCAGTAGAAGAGGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCTGTTTTAGCTCTACATTTTCAGTAGAAGAGGAATTC  1076