BAC Information

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BAC

Clone NameB6Ng01-017A10
Chromosome15 (Build37)
Map Location 12,645,314 - 12,771,485
singlet/doubletdoublet
Overlap gene6030458C11Rik, Rnasen
Upstream geneLOC100039772, Npr3, LOC381002, Sub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109
Downstream geneCdh6, LOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017A10.bB6Ng01-017A10.g
ACCDH850823DH850824
length932747
definitionDH850823|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A10, 5' end.DH850824|Mus musculus domesticus DNA, BAC clone: B6Ng01-017A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,770,557 - 12,771,485)(12,645,314 - 12,646,059)
sequence
gaattcctggggcttaaaatacatagattaatcctatgaatggacttaga
ggaaaaaaatctatagggtaatttctaacttaagcctattaaatttaaat
agaacctacaatccttcaaaaaagacagctagtgagaatcatcgccacat
tattaagtcagtgtttgccccattgtccactgataaaattactactccca
ataaagtttgcctctagagttaagtgaaaaattattttgaggcagacatg
gtggcctgtggtctaaataaaaatgatcccattgaatcatatggagtggt
attactggaggcatggccttgttggaggaagtgtgtcccttgggtaacac
tttgatgtttcagaagggcaagccaggtctgatggctcaccctctcttcc
tgctgcctgcatgctgccatgctttctaccagcctaactgacaatggact
gaacctctgagctgtgagtcagctccagttaaatgttgtcctttataaga
gttgccatggtcatagtgtctcttcacagcaaggaaaccctaactaagac
acggttcctgcctgcagtgtcagcacttgggaggacaaggtaggaagact
gtttctaaacctccgtgtcagcctggaacaaatctgagaccctgcctcat
aaacttctataaatttctagacacatgtattacaacatgtattagctttg
ttaccacaaatcaaaaaagctctactcaaaagaaatgtgtggcgccagtt
agatggctccggaagtaacggtgcttcctgcccaggccgacaggtgtgag
ccccagatcctacgtgggcaaaggagagaactgcctttccaaaggctgtc
ttctcgatcctacgtacacaccgttgtatactcacggacatttgtaagcc
cgccctttctattctgaatatacacaccacac
gaattctccgcttccttctccagtaccgtgtcagccttaatgctgcctta
atgataagagtttaatactaacccctgaaactctcagccagccccaacta
aatgttttctttataagtgttgccttgaacatggtatctctctcttcaca
gcaaaagaaataggtgggatgggaggaaggtcagagacccaagagggtgg
gtactatattgaaaaagacacaaagaacaaagaagcatcctagagaactg
aaatcaagttcaggaaggaccaagtgataactcccctgcagacccacctg
aggtacctctcttcatgttggtagtccctcaagtacatcgtaagagctca
atggcagaatcagcaggttctacatgttcctgcagtccagatgttccctt
ttatgcagcaaaagcatcttttatgggcttatggacccatcacagactgc
atttcctaacccacttgcatctaagcaggggccatatactgggtactggc
tccaagccaatgcagctcagagacaggtgtgacatcgcagcaccatcttt
tgttccttccaatagtgagaggcaaaatacttacaaccctgagaaaggaa
gacagaaaaaacgactctggtctttgaattcctcttcagggaggatccat
ctgccatcaagagctcctgttccagttaccctgtggaagagaaatcattg
ttgtcatgttcgggtcacataaaccaccctgagactcggtggtggcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12770557_12771485
seq2: B6Ng01-017A10.b_45_976 (reverse)

seq1  GTGTGTGTGTGTAT-GTATGTAT-GGGAGGGCGTGCTTACATATGTCCGT  48
      ||||| ||||||||  |  | || |  |||||| ||||||| ||||||||
seq2  GTGTG-GTGTGTATATTCAGAATAGAAAGGGCGGGCTTACAAATGTCCGT  49

seq1  GAGTATACCACGGTGTGTACGTAGGATCGAGAAGACAGCCTTTGG-AAGG  97
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  GAGTATACAACGGTGTGTACGTAGGATCGAGAAGACAGCCTTTGGAAAGG  99

seq1  CAGTTCTCTCCTTTGCCCACGTTGGATCTGGGGCTCACACCTGTCGGCCT  147
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGTTCTCTCCTTTGCCCACGTAGGATCTGGGGCTCACACCTGTCGGCCT  149

seq1  GGGCAGGAAGCACCGTTACTTCCGGAGCCATCTAACTGGCGCCACACATT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGAAGCACCGTTACTTCCGGAGCCATCTAACTGGCGCCACACATT  199

seq1  TCCTTTTGAGTAGAGC-TTTTTGATTTGTGGTAACAAAGCTAATACATGT  246
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  T-CTTTTGAGTAGAGCTTTTTTGATTTGTGGTAACAAAGCTAATACATGT  248

seq1  TGTAATACATGTGTCTAG-AATTTATAGAAGTTTATGAGGCAGGGTCTCA  295
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTAATACATGTGTCTAGAAATTTATAGAAGTTTATGAGGCAGGGTCTCA  298

seq1  GATTTGTTCCAGGCTGACACGGAGGTTTAGAAACAGTCTTCCTACCTTGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTTCCAGGCTGACACGGAGGTTTAGAAACAGTCTTCCTACCTTGT  348

seq1  CCTCCCAAGTGCTGACACTGCAGGCAGGAACCGTGTCTTAGTTAGGGTTT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTGCTGACACTGCAGGCAGGAACCGTGTCTTAGTTAGGGTTT  398

seq1  CCTTGCTGTGAAGAGACACTATGACCATGGCAACTCTTATAAAGGACAAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCTGTGAAGAGACACTATGACCATGGCAACTCTTATAAAGGACAAC  448

seq1  ATTTAACTGGAGCTGACTCACAGCTCAGAGGTTCAGTCCATTGTCAGTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTGGAGCTGACTCACAGCTCAGAGGTTCAGTCCATTGTCAGTTA  498

seq1  GGCTGGTAGAAAGCATGGCAGCATGCAGGCAGCAGGAAGAGAGGGTGAGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTAGAAAGCATGGCAGCATGCAGGCAGCAGGAAGAGAGGGTGAGC  548

seq1  CATCAGACCTGGCTTGCCCTTCTGAAACATCAAAGTGTTACCCAAGGGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGACCTGGCTTGCCCTTCTGAAACATCAAAGTGTTACCCAAGGGAC  598

seq1  ACACTTCCTCCAACAAGGCCATGCCTCCAGTAATACCACTCCATATGATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCTCCAACAAGGCCATGCCTCCAGTAATACCACTCCATATGATT  648

seq1  CAATGGGATCATTTTTATTTAGACCACAGGCCACCATGTCTGCCTCAAAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGGATCATTTTTATTTAGACCACAGGCCACCATGTCTGCCTCAAAA  698

seq1  TAATTTTTCACTTAACTCTAGAGGCAAACTTTATTGGGAGTAGTAATTTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCACTTAACTCTAGAGGCAAACTTTATTGGGAGTAGTAATTTT  748

seq1  ATCAGTGGACAATGGGGCAAACACTGACTTAATAATGTGGCGATGATTCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGGACAATGGGGCAAACACTGACTTAATAATGTGGCGATGATTCT  798

seq1  CACTAGCTGTCTTTTTTGAAGGATTGTAGGTTCTATTTAAATTTAATAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCTGTCTTTTTTGAAGGATTGTAGGTTCTATTTAAATTTAATAGG  848

seq1  CTTAAGTTAGAAATTACCCTATAGATTTTTTTCCTCTAAGTCCATTCATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTTAGAAATTACCCTATAGATTTTTTTCCTCTAAGTCCATTCATA  898

seq1  GGATTAATCTATGTATTTTAAGCCCCAGGAATTC  929
      ||||||||||||||||||||||||||||||||||
seq2  GGATTAATCTATGTATTTTAAGCCCCAGGAATTC  932

seq1: chr15_12645314_12646059
seq2: B6Ng01-017A10.g_57_803

seq1  GAATTCTCAGC-TCCTTCTCCAGTACCGTGTCAGCCTTAATGCTGCCTTA  49
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGCTTCCTTCTCCAGTACCGTGTCAGCCTTAATGCTGCCTTA  50

seq1  ATGATAAGAGTTTAATACTAACCCCTGAAACTCTCAGCCAGCCCCAACTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAAGAGTTTAATACTAACCCCTGAAACTCTCAGCCAGCCCCAACTA  100

seq1  AATGTTTTCTTTATAAGTGTTGCCTTGAACATGGTATCTCTCTCTTCACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTCTTTATAAGTGTTGCCTTGAACATGGTATCTCTCTCTTCACA  150

seq1  GCAAAAGAAATAGGTGGGATGGGAGGAAGGTCAGAGACCCAAGAGGGTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGAAATAGGTGGGATGGGAGGAAGGTCAGAGACCCAAGAGGGTGG  200

seq1  GTACTATATTGAAAAAGACACAAAGAACAAAGAAGCATCCTAGAGAACTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATATTGAAAAAGACACAAAGAACAAAGAAGCATCCTAGAGAACTG  250

seq1  AAATCAAGTTCAGGAAGGACCAAGTGATAACTCCCCTGCAGACCCACCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGTTCAGGAAGGACCAAGTGATAACTCCCCTGCAGACCCACCTG  300

seq1  AGGTACCTCTCTTCATGTTGGTAGTCCCTCAAGTACATCGTAAGAGCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCTCTCTTCATGTTGGTAGTCCCTCAAGTACATCGTAAGAGCTCA  350

seq1  ATGGCAGAATCAGCAGGTTCTACATGTTCCTGCAGTCCAGATGTTCCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGAATCAGCAGGTTCTACATGTTCCTGCAGTCCAGATGTTCCCTT  400

seq1  TTATGCAGCAAAAGCATCTTTTATGGGCTTATGGACCCATCACAGACTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGCAAAAGCATCTTTTATGGGCTTATGGACCCATCACAGACTGC  450

seq1  ATTTCCTAACCCACTTGCATCTAAGCAGGGGCCATATACTGGGTACTGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTAACCCACTTGCATCTAAGCAGGGGCCATATACTGGGTACTGGC  500

seq1  TCCAAGCCAATGCAGCTCAGAGACAGGTGTGACATCGCAGCACCATCTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCCAATGCAGCTCAGAGACAGGTGTGACATCGCAGCACCATCTTT  550

seq1  TGTTCCTTCCAATAGTGAGAGGCAAAATACTTACAACCCTGAGAAAGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTCCAATAGTGAGAGGCAAAATACTTACAACCCTGAGAAAGGAA  600

seq1  GACAGAAAAAACGACCCTGGTCTTTGAATTCCTCTTCAGGGAGGATCCAT  649
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GACAGAAAAAACGACTCTGGTCTTTGAATTCCTCTTCAGGGAGGATCCAT  650

seq1  CTGCCATCAAGAGCTCCTGTTCCAGTTACCCTGTGGAAGAGAAATCATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATCAAGAGCTCCTGTTCCAGTTACCCTGTGGAAGAGAAATCATTG  700

seq1  TTGTCATGTTCGGGTCACATAAACCACCCTGAGACTCGGTGGTGGCG  746
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATGTTCGGGTCACATAAACCACCCTGAGACTCGGTGGTGGCG  747