BAC Information

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BAC

Clone NameB6Ng01-017E16
Chromosome15 (Build37)
Map Location 33,387,752 - 33,485,038
singlet/doubletdoublet
Overlap genePgcp
Upstream geneSema5a, LOC100040962, Sdc2, 1700084J12Rik
Downstream geneTspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017E16.bB6Ng01-017E16.g
ACCDH851018DH851019
length1731,039
definitionDH851018|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E16, 5' end.DH851019|Mus musculus domesticus DNA, BAC clone: B6Ng01-017E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,387,752 - 33,387,924)(33,483,999 - 33,485,038)
sequence
cagaacagccaggacaacatagagaaaccatgtcttgaaaaataaataaa
taaataaataaataagtgacattctagagaaaatccagaaagtcattctt
tgccttgaacttatatctgagaaagtgtttatgtatatgtatatgtatat
gtatatgtatatgtatatgtata
gaattcttaccatgcagtctctatcccatcctgatttctctttgcacttt
acacttgctcttgtgctcatctttcatgaataattccttcacaaatttaa
aaagccaattgtcattatgctgtttgttttgtgtaaaccagattttcgag
gtagacattatttccttagtgtggatagcaaagaggtatagacataagtt
aactaatggccactgaaatagcatacagaaagccagtccaaagcacagtg
ccagtgagactaggaagcaggtggtgtgggtaggaatacatactactatc
cagcctagaaacactgtctccactgatagcacagcctaatcatgcatgaa
gaaaatcaatttatcttctactgaatgtcagatgaaggctaagtcaagta
gtgatctactctttggagaacaatgtgagcatagtataggaggttagtaa
aatttccatggattccaattatagatctgtgaatatctgaattaggtgag
gctttcatcctgagtcactcatgtctatgaactggataaagtgctcgaca
tattctctacatcaccaaaaattcagccaaaacaatattggggtaatatg
ggcccacaacctagaagaaaactttgaggtagataaaacttcaatagatt
tccggtgttttcaacagacttagactcacacttgctactgtatgtagctt
ttgattacaaacacaacagttgggcagtgctggtacccataactatcttg
ttaattagcttatgtcatacaatgtatagtcaaggctgtaacactacaag
cagaagaggcacaccagaatagctttttgagctagctgtctttcctatga
gcaggatgctgggaagtcctttcttccagaaccaatgagggaggcatatt
gccctgtctttccatgctgctttcccccatcttgggttcagtatatttca
gtgtgaagccagattagaacagagaaagagtgctgcagagaggatatcat
aagactgcctaagaaaattctaatttctatcttggtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_33387752_33387924
seq2: B6Ng01-017E16.b_51_223

seq1  CAGAACAGCCAGGACAACATAGAGAAACCATGTCTTGAAAAATAAATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGCCAGGACAACATAGAGAAACCATGTCTTGAAAAATAAATAAA  50

seq1  TAAATAAATAAATAAGTGACATTCTAGAGAAAATCCAGAAAGTCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATAAATAAGTGACATTCTAGAGAAAATCCAGAAAGTCATTCTT  100

seq1  TGCCTTGAACTTATATCTGAGAAAGTGTTTATGTATATGTATATGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAACTTATATCTGAGAAAGTGTTTATGTATATGTATATGTATAT  150

seq1  GTATATGTATATGTATATGTATA  173
      |||||||||||||||||||||||
seq2  GTATATGTATATGTATATGTATA  173

seq1: chr15_33483999_33485038
seq2: B6Ng01-017E16.g_64_1102 (reverse)

seq1  AGCA-CAAGATAGAAATTAGAATTTTTCCTAGGCAGTTTCTATGTGTATC  49
      |||| ||||||||||||||||| ||||| |||||||| | ||||  ||| 
seq2  AGCACCAAGATAGAAATTAGAA-TTTTCTTAGGCAGTCT-TATG-ATAT-  46

seq1  CCTCTTCTGCAGCACTCTTTCTCTGTTCTATTCT-GCTTCACAACTGAAA  98
      |||| ||||||||||||||||||||||||| ||| ||||||| |||||||
seq2  CCTC-TCTGCAGCACTCTTTCTCTGTTCTAATCTGGCTTCAC-ACTGAAA  94

seq1  TATACTGAACCAAAGATGGGGGAAAGCAGCATGGAAAGACA-GGCAATAT  147
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  TATACTGAACCCAAGATGGGGGAAAGCAGCATGGAAAGACAGGGCAATAT  144

seq1  GCCT-CCTCATTGTTTCTGGAAGGAAGGACTTCCCAGCATCCTGCTCATA  196
      |||| |||||||| ||||||||| ||||||||||||||||||||||||||
seq2  GCCTCCCTCATTGGTTCTGGAAGAAAGGACTTCCCAGCATCCTGCTCATA  194

seq1  GGAAAGACAGCTAGCTC-AAAAGCTATTCTGGTGTGCCTCTTCTGCTTGT  245
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGAAAGACAGCTAGCTCAAAAAGCTATTCTGGTGTGCCTCTTCTGCTTGT  244

seq1  AGTGTTACAGCCTTGACTATACATTGTATGACATAAGCTAATTAACAAGA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACAGCCTTGACTATACATTGTATGACATAAGCTAATTAACAAGA  294

seq1  TAGTTATGGGTACCAGCACTGCCCAACTGTTGTGTTTGTAATCAAAAGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTATGGGTACCAGCACTGCCCAACTGTTGTGTTTGTAATCAAAAGCT  344

seq1  ACATACAGTAGCAAGTGTGAGTCTAAGTCTGTTGAAAACACCGGAAATCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGTAGCAAGTGTGAGTCTAAGTCTGTTGAAAACACCGGAAATCT  394

seq1  ATTGAAGTTTTATCTACCTCAAAGTTTTCTTCTAGGTTGTGGGCCCATAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTTTTATCTACCTCAAAGTTTTCTTCTAGGTTGTGGGCCCATAT  444

seq1  TACCCCAATATTGTTTTGGCTGAATTTTTGGTGATGTAGAGAATATGTCG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCAATATTGTTTTGGCTGAATTTTTGGTGATGTAGAGAATATGTCG  494

seq1  AGCACTTTATCCAGTTCATAGACATGAGTGACTCAGGATGAAAGCCTCAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTATCCAGTTCATAGACATGAGTGACTCAGGATGAAAGCCTCAC  544

seq1  CTAATTCAGATATTCACAGATCTATAATTGGAATCCATGGAAATTTTACT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTCAGATATTCACAGATCTATAATTGGAATCCATGGAAATTTTACT  594

seq1  AACCTCCTATACTATGCTCACATTGTTCTCCAAAGAGTAGATCACTACTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCTATACTATGCTCACATTGTTCTCCAAAGAGTAGATCACTACTT  644

seq1  GACTTAGCCTTCATCTGACATTCAGTAGAAGATAAATTGATTTTCTTCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAGCCTTCATCTGACATTCAGTAGAAGATAAATTGATTTTCTTCAT  694

seq1  GCATGATTAGGCTGTGCTATCAGTGGAGACAGTGTTTCTAGGCTGGATAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATTAGGCTGTGCTATCAGTGGAGACAGTGTTTCTAGGCTGGATAG  744

seq1  TAGTATGTATTCCTACCCACACCACCTGCTTCCTAGTCTCACTGGCACTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGTATTCCTACCCACACCACCTGCTTCCTAGTCTCACTGGCACTG  794

seq1  TGCTTTGGACTGGCTTTCTGTATGCTATTTCAGTGGCCATTAGTTAACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGGACTGGCTTTCTGTATGCTATTTCAGTGGCCATTAGTTAACTT  844

seq1  ATGTCTATACCTCTTTGCTATCCACACTAAGGAAATAATGTCTACCTCGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATACCTCTTTGCTATCCACACTAAGGAAATAATGTCTACCTCGA  894

seq1  AAATCTGGTTTACACAAAACAAACAGCATAATGACAATTGGCTTTTTAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGGTTTACACAAAACAAACAGCATAATGACAATTGGCTTTTTAAA  944

seq1  TTTGTGAAGGAATTATTCATGAAAGATGAGCACAAGAGCAAGTGTAAAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGAAGGAATTATTCATGAAAGATGAGCACAAGAGCAAGTGTAAAGT  994

seq1  GCAAAGAGAAATCAGGATGGGATAGAGACTGCATGGTAAGAATTC  1040
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGAAATCAGGATGGGATAGAGACTGCATGGTAAGAATTC  1039