BAC Information

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BAC

Clone NameB6Ng01-017N13
Chromosome15 (Build37)
Map Location 89,175,060 - 89,175,339
singlet/doubletsinglet
Overlap genenone
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox
Downstream geneTmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017N13.g
ACCDH851406
length522
definitionDH851406|Mus musculus domesticus DNA, BAC clone: B6Ng01-017N13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgctggtgtctgcaagtttccgtagacatccctggatatatgcatatgtc
tggagggttaggtaggattttgtaggagtctgtgtaggttactatgggag
cctataggtgtctgcaagagtctatgtgtgtctgtagaaatctgtttttc
tgtaggatttatgggtatctataggtaactataggagtctgtaggaatct
acaattgtctggtgaaatctattctttttttaaaaatatttatttggggc
ctagcaaacacagaagtggatgctcacagtcagctattgaatggatcaca
gggcccccaatggaggagctagagaaagcacccaaggaactaaagggaac
tgcaaccctataggtggaacaatatgaactaaccagtaccccagagctct
tgactctagctgcatgtgtatcaaaagatggcctagtcggccatcactgg
aaagagaggcccattggacttgcaaacttttttatgcccctgtacagggg
aacgccagggccaaaaaggggg
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89175060_89175339
seq2: B6Ng01-017N13.g_319_595 (reverse)

seq1  CCCCACTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCAT-ATAAAGTTT  49
       ||| ||||||||||||||||||||||||||| ||||||| | |||||||
seq2  -CCCCCTTTTTGGCCCTGGCGTTCCCCTGTACAGGGGCATAAAAAAGTTT  49

seq1  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGGCGACTAGGCCATCTTT  99
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTT  99

seq1  TGGTACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCAT  149
      || |||| |||||||||||||||||||||| |||||||||||||||||||
seq2  TGATACACATGCAGCTAGAGTCAAGAGCTCTGGGGTACTGGTTAGTTCAT  149

seq1  ATTGTTGTTCCACCTATAGGGTTGCAGATCTCTTTAGCTCCTTGGATACT  199
      |   ||||||||||||||||||||||| || |||||| ||||||| | ||
seq2  A---TTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGTTCCTTGGGTGCT  196

seq1  TTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTG  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTCTCTAGCTCCTCCATTGGGGGCCCTGTGATCCATTCAATAGCTGACTG  246

seq1  TGAGCATCCACTTCTGTGTTTGCTAGGCCCC  280
      |||||||||||||||||||||||||||||||
seq2  TGAGCATCCACTTCTGTGTTTGCTAGGCCCC  277