BAC Information

Click to search

BAC

Clone NameB6Ng01-018O04
Chromosome15 (Build37)
Map Location 20,864,033 - 21,012,769
singlet/doubletdoublet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12, LOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018O04.bB6Ng01-018O04.g
ACCDH852152DH852153
length1,1071,105
definitionDH852152|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O04, 5' end.DH852153|Mus musculus domesticus DNA, BAC clone: B6Ng01-018O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,864,033 - 20,865,145)(21,011,660 - 21,012,769)
sequence
gaattcttacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaatatccctgatat
tccacctcacaccagccagaatggctaagatcaaaaattcagatgacagc
agatgctgatgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgaaagcttgtacagccactctggaaatcagtctggcagttcctca
gaaaattggacatattactacaggaggatcatgcaatacctctcctgggc
atatatccagaagatgttccaactggtaagaaggacacatgctccgctat
ctaatggaggtggaccctttgatttccttctctctaatgttggacattta
aatgatgggagtggccgtcctaacttttaaagaaaatttattcttctgtt
ctgagcagctctcaattaccaataactacttatctatgcacagggctgtg
ttcaccttgccgctctattctgagaatcattcctgtttgaatacccgggc
ctggttttactcaagggtagacttcagtttgcaagctgaaacaaccccat
tctttcctaagcagctcttggtcagtgttttatcacaggtgaagatgatt
tattcttctatatttgcctgtgtcacataagttaatatcactgtaaacaa
acaacatcgaaagctactctatgtcatcgataaatagaaagttttttttt
tttctttctctatgtacgtgttccttgtgtgagttggtgtgaatgaataa
acatttggatgtgggtgcatacaatcacgtgcatgtacgaggccataaga
acatgtgtgtctcactgaattactttctactatttttctattttagtctc
tgaatcgagaacactcttctttagctattcttcttggtctctgagctcca
agtatgtatgatatatattcatatgaatctttcaacatacacctatcata
agttaacttggccttttccattaggattttttttctcttcctcaaagtaa
aataaatgaagaaaacatggcattgtaaggcacatttatcttggaataaa
ttagctt
gaattcaagtcatagaaaggaaaaacatcttagaatgagtattcattatt
cagttattcagagaagtcacacgcaccatggtgcttagaagcacaaaagc
atagacgcttgcgcaccttagtatattcatgcttatatcccttcccaatg
tgagattgttacccgaaaggatccatcagcttttcaaacacattttgtat
catacaattttagaccattttattctggccttttaaataattacatttca
gctcatctcttaaatgagtgcggtactaggtttgagatcttttgatttaa
aattgacttgagatagttaactagatattgaaaagaaattctgcgtttga
aaatcgtatgagtgtttttaaacataaagacctcaattcattttgctgat
tattaatttgctgacaacgctaatatacacgcatgtgtgtacaagtgcac
atgcgcacacacacacacacacacacacacacacagacacacacacacat
gcatacacacaactattatcatttgtaaaatcctgtccattttaaagttg
aaaaacaaaaaccaagtctctgagaatcctgtaaacgaggctttattttc
tccctctcttcttgctatcatgcagtatttgtaagtattctctatatttt
tcttgtgcactaccctaggcattgtgtaacgtgctcatgagaaaataggt
tcagactaggcaggcttgtgtggtctccaaacacctatgacacaaaacaa
gacataatagtccgagatgcaagggattcctggagggaggttgcactctt
ttctttctcttctcactctgttgcaagaagtgggcagaaagctttcttat
tacatgtgtttacacttataaaggaggaagacaggaaaacaacagatata
aaattactgaaaatgaaagattatggtggtgttctgtcacttcaaataac
ctcaaatatctatagtgacaatgcaaacaaactataaaaaaagtgattat
atttttgtggaactgttgataggcttttaagttaaagacagagtcaatct
accttgtcaagattatgaaactccttctttccttttcattcagccctatt
ttaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20864033_20865145
seq2: B6Ng01-018O04.b_42_1148

seq1  GAATTCTTACCTGAGGAATACCAAATGGCTGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACCTGAGGAATACCAAATGGCTGAGAAGCACCTGAAAAAATG  50

seq1  TTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAATATCCCTGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATCCTTAATCATCAGGGAAATGCAAATCAAAATATCCCTGATAT  100

seq1  TCCACCTCACACCAGCCAGAATGGCTAAGATCAAAAATTCAGATGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGCCAGAATGGCTAAGATCAAAAATTCAGATGACAGC  150

seq1  AGATGCTGATGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGATGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGAAAGCTTGTACAGCCACTCTGGAAATCAGTCTGGCAGTTCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAAAGCTTGTACAGCCACTCTGGAAATCAGTCTGGCAGTTCCTCA  250

seq1  GAAAATTGGACATATTACTACAGGAGGATCATGCAATACCTCTCCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGGACATATTACTACAGGAGGATCATGCAATACCTCTCCTGGGC  300

seq1  ATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCGCTAT  350

seq1  CTAATGGAGGTGGACCCTTTGATTTCCTTCTCTCTAATGTTGGACATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGAGGTGGACCCTTTGATTTCCTTCTCTCTAATGTTGGACATTTA  400

seq1  AATGATGGGAGTGGCCGTCCTAACTTTTAAAGAAAATTTATTCTTCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGGAGTGGCCGTCCTAACTTTTAAAGAAAATTTATTCTTCTGTT  450

seq1  CTGAGCAGCTCTCAATTACCAATAACTACTTATCTATGCACAGGGCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGCTCTCAATTACCAATAACTACTTATCTATGCACAGGGCTGTG  500

seq1  TTCACCTTGCCGCTCTATTCTGAGAATCATTCCTGTTTGAATACCCGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTTGCCGCTCTATTCTGAGAATCATTCCTGTTTGAATACCCGGGC  550

seq1  CTGGTTTTACTCAAGGGTAGACTTCAGTTTGCAAGCTGAAACAACCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTACTCAAGGGTAGACTTCAGTTTGCAAGCTGAAACAACCCCAT  600

seq1  TCTTTCCTAAGCAGCTCTTGGTCAGTGTTTTATCACAGGTGAAGATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTAAGCAGCTCTTGGTCAGTGTTTTATCACAGGTGAAGATGATT  650

seq1  TATTCTTCTATATTTGCCTGTGTCACATAAGTTAATATCACTGTAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTATATTTGCCTGTGTCACATAAGTTAATATCACTGTAAACAA  700

seq1  ACAACATCGAAAGCTACTCTATGTCATCGATAAATAGAAAGTTTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCGAAAGCTACTCTATGTCATCGATAAATAGAAAGTTTTTTTTT  750

seq1  TTTCTTTCTCTATGTACGTGTTCCTTGTGTGAGTTGGTGTGAATGAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTCTATGTACGTGTTCCTTGTGTGAGTTGGTGTGAATGAATAA  800

seq1  ACATTTGGATGTGGGTGCATACAATCACGTGCATGTACGAGGCCATAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGGATGTGGGTGCATACAATCACGTGCATGTACGAGGCCATAAGA  850

seq1  ACATGTGTGTCTCACTGAATTACTTTCTACTATTTTTCTATTTTAGTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGTCTCACTGAATTACTTTCTACTATTTTTCTATTTTAGTCTC  900

seq1  TGAATCGAGAACACTCTTCTTTAGCTATTCTTCTTGGTCTCTGAGCTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCGAGAACACTCTTCTTTAGCTATTCTTCTTGGTCTCTGAGCTCCA  950

seq1  AGTATGTATGATATATATTCATATGAATCTTTCAAACATACAACCTATCA  1000
      ||||||||||||||||||||||||||||||||| ||||||| ||||||||
seq2  AGTATGTATGATATATATTCATATGAATCTTTC-AACATAC-ACCTATCA  998

seq1  TAAGTTAACTTGGGCTTTTCCATTAGGATTTTTTTTCTCTTACTCAAAAA  1050
      ||||||||||||| ||||||||||||||||||||||||||| |||  |||
seq2  TAAGTTAACTTGGCCTTTTCCATTAGGATTTTTTTTCTCTTCCTC--AAA  1046

seq1  GTAAAATAAAATGAAGAAAACATGGTATTGTTAAGGTCACATTAATC-TG  1099
      ||||||| ||||||||||||||||| |||| ||||| |||||| ||| ||
seq2  GTAAAAT-AAATGAAGAAAACATGGCATTG-TAAGG-CACATTTATCTTG  1093

seq1  TAATAAATTAGCTT  1113
       |||||||||||||
seq2  GAATAAATTAGCTT  1107

seq1: chr15_21011660_21012769
seq2: B6Ng01-018O04.g_67_1171 (reverse)

seq1  ATTAAAATAGAGGCTGAATTGAAAAGAAAAGAAGGAGTTTCATAATCTTG  50
      |||||||||| ||||||| ||||||| |||||||||||||||||||||||
seq2  ATTAAAATAG-GGCTGAA-TGAAAAGGAAAGAAGGAGTTTCATAATCTTG  48

seq1  ACAAGGTAGATTGGACTTCTGTCTATAACTTAAAAGCCTATCAACAGTTC  100
      |||||||||||| ||| ||||||| |||||||||||||||||||||||||
seq2  ACAAGGTAGATT-GAC-TCTGTCTTTAACTTAAAAGCCTATCAACAGTTC  96

seq1  CACAAAAATATAATCACTTTTTTTTATAGTTTGTCTGCATTGTCACTATA  150
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  CACAAAAATATAATCAC-TTTTTTTATAGTTTGTTTGCATTGTCACTATA  145

seq1  GATATTTGAGGTTATTTGAAGTGACAGAACACCACCATAATCTTTCATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGAGGTTATTTGAAGTGACAGAACACCACCATAATCTTTCATTT  195

seq1  TCAGTAATTTTATATCTGTTGTTTTCCTGTCTTCCTCCTTTATAAGTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATTTTATATCTGTTGTTTTCCTGTCTTCCTCCTTTATAAGTGTA  245

seq1  AACACATGTAATAAGAAAGCTTTCTGCCCACTTCTTGCAACAGAGTGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGTAATAAGAAAGCTTTCTGCCCACTTCTTGCAACAGAGTGAGA  295

seq1  AGAGAAAGAAAAGAGTGCAACCTCCCTCCAGGAATCCCTTGCATCTCGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAAAAGAGTGCAACCTCCCTCCAGGAATCCCTTGCATCTCGGA  345

seq1  CTATTATGTCTTGTTTTGTGTCATAGGTGTTTGGAGACCACACAAGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATGTCTTGTTTTGTGTCATAGGTGTTTGGAGACCACACAAGCCTG  395

seq1  CCTAGTCTGAACCTATTTTCTCATGAGCACGTTACACAATGCCTAGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCTGAACCTATTTTCTCATGAGCACGTTACACAATGCCTAGGGTA  445

seq1  GTGCACAAGAAAAATATAGAGAATACTTACAAATACTGCATGATAGCAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAAGAAAAATATAGAGAATACTTACAAATACTGCATGATAGCAAG  495

seq1  AAGAGAGGGAGAAAATAAAGCCTCGTTTACAGGATTCTCAGAGACTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGGAGAAAATAAAGCCTCGTTTACAGGATTCTCAGAGACTTGGT  545

seq1  TTTTGTTTTTCAACTTTAAAATGGACAGGATTTTACAAATGATAATAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTCAACTTTAAAATGGACAGGATTTTACAAATGATAATAGTT  595

seq1  GTGTGTATGCATGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGCATGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGTGTGTGT  645

seq1  GTGTGCGCATGTGCACTTGTACACACATGCGTGTATATTAGCGTTGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGCATGTGCACTTGTACACACATGCGTGTATATTAGCGTTGTCAG  695

seq1  CAAATTAATAATCAGCAAAATGAATTGAGGTCTTTATGTTTAAAAACACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAATAATCAGCAAAATGAATTGAGGTCTTTATGTTTAAAAACACT  745

seq1  CATACGATTTTCAAACGCAGAATTTCTTTTCAATATCTAGTTAACTATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACGATTTTCAAACGCAGAATTTCTTTTCAATATCTAGTTAACTATCT  795

seq1  CAAGTCAATTTTAAATCAAAAGATCTCAAACCTAGTACCGCACTCATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAATTTTAAATCAAAAGATCTCAAACCTAGTACCGCACTCATTTA  845

seq1  AGAGATGAGCTGAAATGTAATTATTTAAAAGGCCAGAATAAAATGGTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGAGCTGAAATGTAATTATTTAAAAGGCCAGAATAAAATGGTCTA  895

seq1  AAATTGTATGATACAAAATGTGTTTGAAAAGCTGATGGATCCTTTCGGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTATGATACAAAATGTGTTTGAAAAGCTGATGGATCCTTTCGGGT  945

seq1  AACAATCTCACATTGGGAAGGGATATAAGCATGAATATACTAAGGTGCGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTCACATTGGGAAGGGATATAAGCATGAATATACTAAGGTGCGC  995

seq1  AAGCGTCTATGCTTTTGTGCTTCTAAGCACCATGGTGCGTGTGACTTCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGTCTATGCTTTTGTGCTTCTAAGCACCATGGTGCGTGTGACTTCTC  1045

seq1  TGAATAACTGAATAATGAATACTCATTCTAAGATGTTTTTCCTTTCTATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACTGAATAATGAATACTCATTCTAAGATGTTTTTCCTTTCTATG  1095

seq1  ACTTGAATTC  1110
      ||||||||||
seq2  ACTTGAATTC  1105