BAC Information

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BAC

Clone NameB6Ng01-020C20
Chromosome15 (Build37)
Map Location 80,426,502 - 80,602,372
singlet/doubletdoublet
Overlap geneGrap2, AW544981, Tnrc6b
Upstream geneDmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1
Downstream geneAdsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020C20.bB6Ng01-020C20.g
ACCDH853049DH853050
length924696
definitionDH853049|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C20, 5' end.DH853050|Mus musculus domesticus DNA, BAC clone: B6Ng01-020C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,601,459 - 80,602,372)(80,426,502 - 80,427,196)
sequence
gaattctgtgactggtctagaaagagacactactgactagtgcaaacaca
aaccctcatttgcacaagatgtttgctatgattatataagcaagcaggaa
tgattgtaacattatactcaataaattactttcctcaagtaatttttctc
tgccttttccagctcagttggaaataaaagaaacaacagtgaagcagtgg
cagaggcagcagagaggtagcaatagcagaacagctggaacacagagttg
agaggccacaagtagccaaataaaaggcagaactgagcagtgggtaggct
gagctgcacacacaggaacacatgcgcatccatacgccacacacatggac
agaaacaacagtaaaaggtagtcatcatcccaacagtgacagctgtcttc
ataaatgcacacataaaagcaagacactgagtacctaacactgtaaccgt
tttcatcccaggtcaggtggtggtcagtaacccttggtgatgcatgacct
gacagcacctgcaatgcattgcaaagcacgcacgttgtgggtcaccaatc
tgccctgaagctgggaaatccatgcactgccccaaacaccttgtgtttaa
tgagacacctgattttgtattaatttttggttgatacatgtttagaaatc
tttttgtcaaattttcataaccccacattcttcacctgtctgaaaacaag
tgtgcctatctctccttttaccttatccggaaacagggcagcgtggggtt
tgaggggttctttttttctcttgcacccaatgccccatttcattaagtct
gttctcttcaactaacatagattggcactcttccttattctaagaattat
tttttggctttgtgggtctttaaaaatctccctgtttttatttatttttt
ttaaacttaccctctttaatcacc
gaattctttttgtcgtgctggcagctgttgtaattgtcaaagcaaatgtg
tagtaggtcagtggccaaatcagaagagacacgggtgactcatttattca
acatgtattgagcacctgctgtgtgccaggcactttattatgctctcggg
ccacggataagttactctctactcagaggtgctcacgagggagcccctta
aagggaggcacacaagtaagcaaaacattgcgagggcctgtctattagag
tatgcgagaggtgggaaggcaaggccaagattctctcgggccaaggaact
gtggatgaagctctcttaagcaggagagtgacagctgattggcgtaagag
atggaaagaatgaaggagaaagagaaaagtgttggagggagaaaagccta
gggtccatgtgtatgacctgtgacctttatatgtccttctgtggctggct
ctggaatggctggggactcgagtttaggaagaaagtataaacacagctgt
ctgggtcagctggggcagggccaagacatatcagttcactatacaggtac
agcgctacggaagcatggggatgcagaagtgcatcagagccctggatgtc
atgtgtcactcttgaagtaatgattagggattatgggaaaatgtcaccaa
gaagaagtgggaggtcataggtcaggctatgaaatcaggaccttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80601459_80602372
seq2: B6Ng01-020C20.b_33_956 (reverse)

seq1  GGTGGTTAAAGATGGGTTAGTTT-AAAAAAATAAATAAATAACAGGGAGA  49
      |||| ||||||| |||| ||||| ||||||||||||||| ||||||||||
seq2  GGTGATTAAAGA-GGGTAAGTTTAAAAAAAATAAATAAA-AACAGGGAGA  48

seq1  TATTT-GAGA-CCACAAAGCC-AAAAATAAATCTTAGATTAAGAAAGATT  96
      | |||  ||| |||||||||| |||||||| ||||||| |||| |||| |
seq2  TTTTTAAAGACCCACAAAGCCAAAAAATAATTCTTAGAATAAGGAAGAGT  98

seq1  GCAAAATCTATGTTAGTTGAAGAG-ACAGACTTAATGAAAATGGGCATTG  145
      ||  |||||||||||||||||||| |||||||||||||||  ||||||||
seq2  GC-CAATCTATGTTAGTTGAAGAGAACAGACTTAATGAAATGGGGCATTG  147

seq1  GGTGCAAGAG-AAAAAAGAA-CCCTCAGAACCCACGCTG-CCTGTTTCCG  192
      |||||||||| ||||||||| |||||| | ||||||||| ||||||||||
seq2  GGTGCAAGAGAAAAAAAGAACCCCTCAAACCCCACGCTGCCCTGTTTCCG  197

seq1  GCTAAGGT-AAAGGAGAGATAGGC-CACTTG-TTTCAGACAGGTGAAGAA  239
      | |||||| ||||||||||||||| |||||| ||||||||||||||||||
seq2  GATAAGGTAAAAGGAGAGATAGGCACACTTGTTTTCAGACAGGTGAAGAA  247

seq1  TGTGGGGTTATGAAAATTTGAC-AAAAGATTTCTAAACATGTATCAACCA  288
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGTGGGGTTATGAAAATTTGACAAAAAGATTTCTAAACATGTATCAACCA  297

seq1  AAAATTAATACAAAATCAGGTGTCTCATT-AACACAAGGTGTTTGGGGCA  337
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAATTAATACAAAATCAGGTGTCTCATTAAACACAAGGTGTTTGGGGCA  347

seq1  GTGCATGGATTTCCCAGCTTCAGGGCAGCTTGGTGACCCACAACGTGCGT  387
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTGCATGGATTTCCCAGCTTCAGGGCAGATTGGTGACCCACAACGTGCGT  397

seq1  GCTTTGCATTGCATTGCAGGTGCTGTCAGGTCATGCATCACCAAGGGTTA  437
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCAATGCATTGCAGGTGCTGTCAGGTCATGCATCACCAAGGGTTA  447

seq1  CTGACCACCACCTGACCTGGGATGAAAACGGTTACAGTGTTAGGTACTCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCACCACCTGACCTGGGATGAAAACGGTTACAGTGTTAGGTACTCA  497

seq1  GTGTCTTGCTTTTATGTGTGCATTTATGAAGACAGCTGTCACTGTTGGGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGCTTTTATGTGTGCATTTATGAAGACAGCTGTCACTGTTGGGA  547

seq1  TGATGACTACCTTTTACTGTTGTTTCTGTCCATGTGTGTGGCGTATGGAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTACCTTTTACTGTTGTTTCTGTCCATGTGTGTGGCGTATGGAT  597

seq1  GCGCATGTGTTCCTGTGTGTGCAGCTCAGCCTACCCACTGCTCAGTTCTG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATGTGTTCCTGTGTGTGCAGCTCAGCCTACCCACTGCTCAGTTCTG  647

seq1  CCTTTTATTTGGCTACTTGTGGCCTCTCAACTCTGTGTTCCAGCTGTTCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATTTGGCTACTTGTGGCCTCTCAACTCTGTGTTCCAGCTGTTCT  697

seq1  GCTATTGCTACCTCTCTGCTGCCTCTGCCACTGCTTCACTGTTGTTTCTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTGCTACCTCTCTGCTGCCTCTGCCACTGCTTCACTGTTGTTTCTT  747

seq1  TTATTTCCAACTGAGCTGGAAAAGGCAGAGAAAAATTACTTGAGGAAAGT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCAACTGAGCTGGAAAAGGCAGAGAAAAATTACTTGAGGAAAGT  797

seq1  AATTTATTGAGTATAATGTTACAATCATTCCTGCTTGCTTATATAATCAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTGAGTATAATGTTACAATCATTCCTGCTTGCTTATATAATCAT  847

seq1  AGCAAACATCTTGTGCAAATGAGGGTTTGTGTTTGCACTAGTCAGTAGTG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACATCTTGTGCAAATGAGGGTTTGTGTTTGCACTAGTCAGTAGTG  897

seq1  TCTCTTTCTAGACCAGTCACAGAATTC  914
      |||||||||||||||||||||||||||
seq2  TCTCTTTCTAGACCAGTCACAGAATTC  924

seq1: chr15_80426502_80427196
seq2: B6Ng01-020C20.g_69_764

seq1  GAATTCTTTTTGTCGTGCTGGCAGCTGTTGTAATTGTCAAAGCAAATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGTCGTGCTGGCAGCTGTTGTAATTGTCAAAGCAAATGTG  50

seq1  TAGTAGGTCAGTGGCCAAATCAGAAGAGACACGGGTGACTCATTTATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGTCAGTGGCCAAATCAGAAGAGACACGGGTGACTCATTTATTCA  100

seq1  ACATGTATTGAGCACCTGCTGTGTGCCAGGCACTTTATTATGCTCTCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATTGAGCACCTGCTGTGTGCCAGGCACTTTATTATGCTCTCGGG  150

seq1  CCACGGATAAGTTACTCTCTACTCAGAGGTGCTCACGAGGGAGCCCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGATAAGTTACTCTCTACTCAGAGGTGCTCACGAGGGAGCCCCTTA  200

seq1  AAGGGAGGCACACAAGTAAGCAAAACATTGCGAGGGCCTGTCTATTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGGCACACAAGTAAGCAAAACATTGCGAGGGCCTGTCTATTAGAG  250

seq1  TATGCGAGAGGTGGGAAGGCAAGGCCAAGATTCTCTCGGGCCAAGGAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGAGAGGTGGGAAGGCAAGGCCAAGATTCTCTCGGGCCAAGGAACT  300

seq1  GTGGATGAAGCTCTCTTAAGCAGGAGAGTGACAGCTGATTGGCGTAAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGAAGCTCTCTTAAGCAGGAGAGTGACAGCTGATTGGCGTAAGAG  350

seq1  ATGGAAAGAATGAAGGAGAAAGAGAAAAGTGTTGGAGGGAGAAAAGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGAATGAAGGAGAAAGAGAAAAGTGTTGGAGGGAGAAAAGCCTA  400

seq1  GGGTCCATGTGTATGACCTGTGACCTTTATATGTCCTTCTGTGGCTGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCATGTGTATGACCTGTGACCTTTATATGTCCTTCTGTGGCTGGCT  450

seq1  CTGGAATGGCTGGGGACTCGAGTTTAGGAAGAAAGTAGAAACACAGCTGT  500
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTGGAATGGCTGGGGACTCGAGTTTAGGAAGAAAGTATAAACACAGCTGT  500

seq1  CTGGGTCAGCTGGGGCAGGGCCAAGACATATCAGTTCACTATACAGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCAGCTGGGGCAGGGCCAAGACATATCAGTTCACTATACAGGTAC  550

seq1  AGCGCTACGGAAGCATGGGGATGCAGAAGTGCAGCAGAGCCCTGGATGTC  600
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCGCTACGGAAGCATGGGGATGCAGAAGTGCATCAGAGCCCTGGATGTC  600

seq1  ATGTGTCACTCTGGAAGTAATGAAGAGGGATGATGGG-AAATGTCACCAA  649
      |||||||||||| ||||||||||  |||||| ||||| ||||||||||||
seq2  ATGTGTCACTCTTGAAGTAATGATTAGGGATTATGGGAAAATGTCACCAA  650

seq1  GAAGAAGTGGGAGGTCAGAGGTCAGGCCATGAAACCAGGACCTTGG  695
      ||||||||||||||||| ||||||||| |||||| |||||||||||
seq2  GAAGAAGTGGGAGGTCATAGGTCAGGCTATGAAATCAGGACCTTGG  696