BAC Information

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BAC

Clone NameB6Ng01-020K14
Chromosome15 (Build37)
Map Location 13,227,097 - 13,355,089
singlet/doubletdoublet
Overlap geneLOC100039907, LOC666686
Upstream geneLOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen, Cdh6
Downstream geneLOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-020K14.bB6Ng01-020K14.g
ACCDH853397DH853398
length1,153998
definitionDH853397|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K14, 5' end.DH853398|Mus musculus domesticus DNA, BAC clone: B6Ng01-020K14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,353,907 - 13,355,089)(13,227,097 - 13,228,118)
sequence
gaattcatttagacagtacattttgtgtgtgcatctacttgcaggtcagt
acatccacctaggcacacagttgttagctacatgaacttttgttcatgtc
ttctctgaagctgaaatttatttagtatttgttgttgttgttgttgtttg
tttgtttgcatatagctcaagacaccactattacccagtccactggagta
ggttctatgggtgctattttccagaatagtcatctgacatgtgcttcctc
taattcccttaaaaggtttgttgtctcagttaaaccagcaaaagcctaga
gaccgccctttcatctcaggaattactgtctaaaagattaataaactcta
catgcattcttctataaggggaacatgggacatttttattgttctgtaca
tgatttgtgcaaacacaactactaatatattgatagaatacaaacaaaag
ttttcgaaaaagcaatgataggatccaataaaccaacttctaatcatttt
aaaaattaaaaggctattttaaatagaatttcgtcatggttcatgttagt
tgtcagcttcagagaatcatctgggaaccaagcctgttggcatgccagtg
ggggctacgttaattatgctcactggggtgacaagatcttcctattcttg
gtgacactcattctcagggccgagatcctatcctggtctgtataggatgg
ggaaagccatctgagcaccaatatgtatacacccctctgtatcttgattg
tggatgtaatgagaccagctgcttcaaggtcctattgccttgacttccct
gatatgttgaagtgtaccgtaaaccacaagccaaagtaagtgttttctcc
ctaagctgctttttttcaaagaattttatcacagcagagaaacgatagtg
aggtagaaatcaaggagtactgtgctgcttctatacagacatacatgata
tgactccactgttattttaacacgattagagactttatgatagcagatta
aattattactctggagaactatcatatttctagttgtcaaagaatataaa
aatctgtttcaacaagaaataatatttatttggaaggttactttcatcat
gatattcagacaataatgttgaactgtttttaaccacgccatcccactgt
tta
gaattccagtttagtgctcggttcccgctggcctctggaagattagcagg
gcagcaactgacacctcaaactacttccctttaagtcatggaaacagcaa
gcaagcaacaacaacaaaaaaaagagaccacaccaacctcacagctgcct
gaaggtcatccatgcgaatgtcaatcacgcagagatcagtgggcttccag
agacaggcatcacaagagacttacaactcactcacacgctgctttaaagg
tgcattctccctttaaagttctgtgctaatggccacttgatctctcagct
ccctttgctacacttttctcccagctaagccgtccacctagttaatgcca
gtcttgattttctggctttggtaactagaaatgccaaagccagaagcatt
tttttttaaacctttccctttgaaagaagagagagacccgaggatgctga
gcagtgactcattgagatgctcagccgggtttaaaatggggttgcttgtc
tctctatatgatttagtgtcaggtaggtgcaaggaattgggttttttttt
tttttttttttttttttttgatattgggaacccaagaaactgcactctga
tttgtgacatcaatcaatttacactgagggccaggaggagatagttcagc
gggtaaagtgcttccctgggcaagcatgaggttctgggtcgagtccccag
aattctttgtgaaagccagctgaggtgatctgtctcatgcttgcaatccc
agaactggaaaggctgcgacagaggatcttggtgcttgctgctatgccac
gtcagtctagaggatcagtgaggtccaggtttggtgacagagaaaaaatg
tgatggaaagtaattgaggatacttccatgtatatgggaccacactgcac
cagtgtccacccaatagtaaattacccaccccacagtgatacattgacta
ctaactagtagtcaatattttattcccttgacctccatgtgcatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13353907_13355089
seq2: B6Ng01-020K14.b_45_1197 (reverse)

seq1  TAAACAGTGGGTATGTCCTGTTGTTTAAAAACATGTTCCAACATTTTATT  50
      ||||||||||| ||| |    || ||||||||| ||| |||||  |||||
seq2  TAAACAGTGGG-ATGGC---GTGGTTAAAAACA-GTT-CAACA--TTATT  42

seq1  GTCTTGATCATCATTGAATGAAAGTAAAACCCTTCAAATAAATATTATTT  100
      ||| |||  |||||   ||||||||  |||| | |||||||||||||  |
seq2  GTC-TGAATATCAT--GATGAAAGT--AACCTTCCAAATAAATATTA--T  85

seq1  TTCTTGTATGATACAGATTTTTTTATATTCCTGTGACAACTTAGAAATAT  150
      ||||||| ||| |||||  |||||||||| || ||||||| |||||||||
seq2  TTCTTGT-TGAAACAGA--TTTTTATATT-CTTTGACAAC-TAGAAATAT  130

seq1  GATTAGTGTCTTCAGAGTAATTATTTTAATCTGCTTATCATAAAGTCTCT  200
      || |||| ||| |||||||| || |||||||||| |||||||||||||||
seq2  GA-TAGT-TCTCCAGAGTAA-TAATTTAATCTGC-TATCATAAAGTCTCT  176

seq1  AATCGTGTTTAAAATTACAGTGGAGTCATTATCATGTATGTCTTGTATTA  250
      ||||||| ||||||| |||||||||||| ||||||||||||| |||| ||
seq2  AATCGTG-TTAAAATAACAGTGGAGTCA-TATCATGTATGTC-TGTA-TA  222

seq1  GAAGCAGCACAGTACTCCTTGATTTCTACCTCACTATCGTTTCTTCTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  GAAGCAGCACAGTACTCCTTGATTTCTACCTCACTATCGTTTCT--CTGC  270

seq1  TGTGATAAAATTCTTTGAAAAAAAGCAGCTTAGGGAGAAAACACTTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAAAATTCTTTGAAAAAAAGCAGCTTAGGGAGAAAACACTTACTT  320

seq1  TGGCTTGTGGTTTACGGTACACTTCAACATATCAGGGAAGTCAAGGCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTGGTTTACGGTACACTTCAACATATCAGGGAAGTCAAGGCAAT  370

seq1  AGGACCTTGAAGCAGCTGGTCTCATTACATCCACAATCAAGATACAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCTTGAAGCAGCTGGTCTCATTACATCCACAATCAAGATACAGAGG  420

seq1  GGTGTATACATATTGGTGCTCAGATGGCTTTCCCCATCCTATACAGACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATACATATTGGTGCTCAGATGGCTTTCCCCATCCTATACAGACCA  470

seq1  GGATAGGATCTCGGCCCTGAGAATGAGTGTCACCAAGAATAGGAAGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGGATCTCGGCCCTGAGAATGAGTGTCACCAAGAATAGGAAGATCT  520

seq1  TGTCACCCCAGTGAGCATAATTAACGTAGCCCCCACTGGCATGCCAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCCCAGTGAGCATAATTAACGTAGCCCCCACTGGCATGCCAACAG  570

seq1  GCTTGGTTCCCAGATGATTCTCTGAAGCTGACAACTAACATGAACCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTTCCCAGATGATTCTCTGAAGCTGACAACTAACATGAACCATGA  620

seq1  CGAAATTCTATTTAAAATAGCCTTTTAATTTTTAAAATGATTAGAAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATTCTATTTAAAATAGCCTTTTAATTTTTAAAATGATTAGAAGTTG  670

seq1  GTTTATTGGATCCTATCATTGCTTTTTCGAAAACTTTTGTTTGTATTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGGATCCTATCATTGCTTTTTCGAAAACTTTTGTTTGTATTCTA  720

seq1  TCAATATATTAGTAGTTGTGTTTGCACAAATCATGTACAGAACAATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATATTAGTAGTTGTGTTTGCACAAATCATGTACAGAACAATAAAA  770

seq1  ATGTCCCATGTTCCCCTTATAGAAGAATGCATGTAGAGTTTATTAATCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCATGTTCCCCTTATAGAAGAATGCATGTAGAGTTTATTAATCTT  820

seq1  TTAGACAGTAATTCCTGAGATGAAAGGGCGGTCTCTAGGCTTTTGCTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGTAATTCCTGAGATGAAAGGGCGGTCTCTAGGCTTTTGCTGGT  870

seq1  TTAACTGAGACAACAAACCTTTTAAGGGAATTAGAGGAAGCACATGTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGAGACAACAAACCTTTTAAGGGAATTAGAGGAAGCACATGTCAG  920

seq1  ATGACTATTCTGGAAAATAGCACCCATAGAACCTACTCCAGTGGACTGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATTCTGGAAAATAGCACCCATAGAACCTACTCCAGTGGACTGGG  970

seq1  TAATAGTGGTGTCTTGAGCTATATGCAAACAAACAAACAACAACAACAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTGGTGTCTTGAGCTATATGCAAACAAACAAACAACAACAACAAC  1020

seq1  AACAAATACTAAATAAATTTCAGCTTCAGAGAAGACATGAACAAAAGTTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATACTAAATAAATTTCAGCTTCAGAGAAGACATGAACAAAAGTTC  1070

seq1  ATGTAGCTAACAACTGTGTGCCTAGGTGGATGTACTGACCTGCAAGTAGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCTAACAACTGTGTGCCTAGGTGGATGTACTGACCTGCAAGTAGA  1120

seq1  TGCACACACAAAATGTACTGTCTAAATGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  TGCACACACAAAATGTACTGTCTAAATGAATTC  1153

seq1: chr15_13227097_13228118
seq2: B6Ng01-020K14.g_68_1065

seq1  GAATTCCAGTTTAGTGCTCGGTTCCCGCTGGCCTCTGGAAGATTAGCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTTAGTGCTCGGTTCCCGCTGGCCTCTGGAAGATTAGCAGG  50

seq1  GCAGCAACTGACACCTCAAACTACTTCCCTTTAAGTCATGGAAACAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAACTGACACCTCAAACTACTTCCCTTTAAGTCATGGAAACAGCAA  100

seq1  GCAAGCAACAACAACAAAAAAAAGAGACCACACCAACCTCACAGCTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCAACAACAACAAAAAAAAGAGACCACACCAACCTCACAGCTGCCT  150

seq1  GAAGGTCATCCATGCGAATGTCAATCACGCAGAGATCAGTGGGCTTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTCATCCATGCGAATGTCAATCACGCAGAGATCAGTGGGCTTCCAG  200

seq1  AGACAGGCATCACAAGAGACTTACAACTCACTCACACGCTGCTTTAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCATCACAAGAGACTTACAACTCACTCACACGCTGCTTTAAAGG  250

seq1  TGCATTCTCCCTTTAAAGTTCTGTGCTAATGGCCACTTGATCTCTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTCTCCCTTTAAAGTTCTGTGCTAATGGCCACTTGATCTCTCAGCT  300

seq1  CCCTTTGCTACACTTTTCTCCCAGCTAAGCCGTCCACCTAGTTAATGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGCTACACTTTTCTCCCAGCTAAGCCGTCCACCTAGTTAATGCCA  350

seq1  GTCTTGATTTTCTGGCTTTGGTAACTAGAAATGCCAAAGCCAGAAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGATTTTCTGGCTTTGGTAACTAGAAATGCCAAAGCCAGAAGCATT  400

seq1  TTTTTTTAAACCTTTCCCTTTGAAAGAAGAGAGAGACCCGAGGATGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAACCTTTCCCTTTGAAAGAAGAGAGAGACCCGAGGATGCTGA  450

seq1  GCAGTGACTCATTGAGATGCTCAGCCGGGTTTAAAATGGGGTTGCTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGACTCATTGAGATGCTCAGCCGGGTTTAAAATGGGGTTGCTTGTC  500

seq1  TCTCTATATGATTTAGTGTCAGGTAGGTGCAAGGAATTGGGTTTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATATGATTTAGTGTCAGGTAGGTGCAAGGAATTGGGTTTTTTTTT  550

seq1  TTTTTTTTTTTTTTTTTTTGATATTGGGAACCCAAGAAACTGCACTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTGATATTGGGAACCCAAGAAACTGCACTCTGA  600

seq1  TTTGTGACATCAATCAATTTACACTGAGGGCCAGGAGGAGATAGTTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACATCAATCAATTTACACTGAGGGCCAGGAGGAGATAGTTCAGC  650

seq1  GGGTAAAGTGCTT-CCTGGGCAAGCATGAGGTTCTGGGTCGAGTCCCCAG  699
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAGTGCTTCCCTGGGCAAGCATGAGGTTCTGGGTCGAGTCCCCAG  700

seq1  AATTC-TTGTGAAAGCCAGCTGAGGTGATCTGTCTCATGCTTGCAATCCC  748
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTGTGAAAGCCAGCTGAGGTGATCTGTCTCATGCTTGCAATCCC  750

seq1  AGAACTGGAAAGGCTGCGACAGGAGGATCTTGGTGCTTGCTGCTATGCCA  798
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGAACTGGAAAGGCTGCGACA-GAGGATCTTGGTGCTTGCTGCTATGCCA  799

seq1  CGTCAGTCTAGAGGAATCAGTGAGGTCCAGGTTTGGTGACAGAGAAAAAA  848
      |||||||||||||| |||||||||||||||||||||||||||||  ||||
seq2  CGTCAGTCTAGAGG-ATCAGTGAGGTCCAGGTTTGGTGACAGAG--AAAA  846

seq1  AATGTGATGGAAAGTAATTGAGGAATACTTCCATGTATATGGGAACACAC  898
      ||||||||||||||||||||||| |||||||||||||||||||| |||||
seq2  AATGTGATGGAAAGTAATTGAGG-ATACTTCCATGTATATGGGACCACAC  895

seq1  ACTTGCACCAGTGTACACACCCAAATAAGTAAAAATACACACACACACAG  948
         |||||||||||   |||||||   ||| ||| ||| ||| | |||||
seq2  ---TGCACCAGTGT--CCACCCAA--TAGT-AAATTACCCAC-CCCACAG  936

seq1  TGATTACATTGACCTTACTAGACTTAGTAGTCAAATATATTTTATTCTCT  998
      ||| |||||||||  ||||| || |||||||||   ||||||||||| ||
seq2  TGA-TACATTGAC--TACTA-AC-TAGTAGTCA---ATATTTTATTCCCT  978

seq1  TGACACTACCATGGTTGCATCATT  1022
      |||| || |||||  |||||||||
seq2  TGAC-CT-CCATG--TGCATCATT  998