BAC Information

Click to search

BAC

Clone NameB6Ng01-021C22
Chromosome6 (Build37)15 (Build37)
Map Location 25,646,080 - 25,647,2025,220,188 - 5,220,748
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358, Gpr37
Downstream genePot1a, EG626912, LOC100041210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-021C22.bB6Ng01-021C22.g
ACCDH853762DH853763
length1,118865
definitionDH853762|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C22, 5' end.DH853763|Mus musculus domesticus DNA, BAC clone: B6Ng01-021C22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,646,080 - 25,647,202)(5,220,188 - 5,220,748)
sequence
gaattctgtatgcaattttgaaatcgagttttacactgtaaacaactgaa
agtgaagaactgccttggtacagaaagacaagccacacatgacctcactt
atccgtgacaccgaaaaatgcagatgccacagacactaaagctatgatgt
tggtggtgacagatgggaaagggctggttagtgagttctgtacatggttt
aaatatttattcacattacaccccaactttacttattattgtcttaaaac
ttatgtaagggtagggaggcagcgagcatggtgatcttggaagccagaag
agagcatctggtcccttggagctggagtcactggctacaaccattcattg
tcagatgggggctaaaactcaagcccacagcaaaagtagtactaggtttt
aacctctgtgcctactccccaactcccagttagtgaattcttattcatag
ttataattatcataagaagtttcagtgtgcctgtcacaacaaggcaatat
cagtgataattcatagaaaattaaggggaaatacctagacctcgggattt
gaagcaagattgaaaaagatgggtgtttgcctagatttgaattctataca
ttgtatgcaagcattggcatatatatggaagcgcttatgcctgaacagat
tttaacctggcttagtgttatctgtctacatttccagtacgtaggacact
aagacaggggtatcaagtaagtattcaaggcaacctacggccacacagca
tgttctatgccaacctaagctatagtttgaaaccctgaccccccccccaa
atgagtacataaaaattctattaagttgaaaacatagattataaagtgaa
tggctttgacttggcttgccttctggtgtaagcgcagaacctcatgcaga
tgcaatacggtgaggatgctctggttcacatctctgatcactgcttgctg
ctctgttttgtgatctccagtctttcctaaatgctgtacttgttcattca
tctttcatcttcgaggccaagaggagaaaggctttctgtaccttccttca
tggtttatgctagagttagatagacaagatcccaggatctttcttggctg
gtttactccatgaaagat
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaagaatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccattttcgtccaggttttcc
agttttgttgagtatagccttttgtagaaggatctgattgtgtttttgga
tttctttcaggatctgttgttatgtctccctttttcatttctgattttgt
ttaattaggatttttgtccctgtgcccttttagttgagtctagctaaggg
tttatctatcttgttgattttctcaaagaaccaactcctcgtttggttaa
ttctttgaatagtcttcttgtttcactttgttgattcacccctggagttg
attatttcctgccgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_25646080_25647202
seq2: B6Ng01-021C22.b_43_1160 (reverse)

seq1  ATCTTTCCATTGGAGTAAACGCAGCCAAAGAAGATCTGTGGGTCTTGTCT  50
      |||||||   |||||||||| |||||||  ||||||   || ||||||||
seq2  ATCTTTC--ATGGAGTAAAC-CAGCCAAGAAAGATCCTGGGATCTTGTCT  47

seq1  ATCTGACTCTAGCATAAACCATGGAAGGAAGGTACAGAAAGCCTTTCTCC  100
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCTAACTCTAGCATAAACCAT-GAAGGAAGGTACAGAAAGCCTTTCTCC  96

seq1  TCTGTGGCCTCG-AGATG-AAGATGAATGAACAAGTACAGCATTTAGGAA  148
      ||| |||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TCT-TGGCCTCGAAGATGAAAGATGAATGAACAAGTACAGCATTTAGGAA  145

seq1  AGACTTGGAGATCACAAAACAGAGCAGCAAGCAGTGATCAGAGATTGTGA  198
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAC-TGGAGATCACAAAACAGAGCAGCAAGCAGTGATCAGAGA-TGTGA  193

seq1  ACCAGAGCATCCTCACCGTATTGCATCTGCATGAGGTTCTGCGCTTACAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCATCCTCACCGTATTGCATCTGCATGAGGTTCTGCGCTTACAC  243

seq1  CAGAAGGCAAGCCAAGTCAAAGCCATTCACTTTATAATCTATGTTTTCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGCAAGCCAAGTCAAAGCCATTCACTTTATAATCTATGTTTTCAA  293

seq1  CTTAATAGAATTTTTATGTACTCATTTGGGGGGGGGGTCAGGGTTTCAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATAGAATTTTTATGTACTCATTTGGGGGGGGGGTCAGGGTTTCAAA  343

seq1  CTATAGCTTAGGTTGGCATAGAACATGCTGTGTGGCCGTAGGTTGCCTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTTAGGTTGGCATAGAACATGCTGTGTGGCCGTAGGTTGCCTTG  393

seq1  AATACTTACTTGATACCCCTGTCTTAGTGTCCTACGTACTGGAAATGTAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTACTTGATACCCCTGTCTTAGTGTCCTACGTACTGGAAATGTAG  443

seq1  ACAGATAACACTAAGCCAGGTTAAAATCTGTTCAGGCATAAGCGCTTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAACACTAAGCCAGGTTAAAATCTGTTCAGGCATAAGCGCTTCCA  493

seq1  TATATATGCCAATGCTTGCATACAATGTATAGAATTCAAATCTAGGCAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGCCAATGCTTGCATACAATGTATAGAATTCAAATCTAGGCAAA  543

seq1  CACCCATCTTTTTCAATCTTGCTTCAAATCCCGAGGTCTAGGTATTTCCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATCTTTTTCAATCTTGCTTCAAATCCCGAGGTCTAGGTATTTCCC  593

seq1  CTTAATTTTCTATGAATTATCACTGATATTGCCTTGTTGTGACAGGCACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTTCTATGAATTATCACTGATATTGCCTTGTTGTGACAGGCACA  643

seq1  CTGAAACTTCTTATGATAATTATAACTATGAATAAGAATTCACTAACTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAACTTCTTATGATAATTATAACTATGAATAAGAATTCACTAACTGG  693

seq1  GAGTTGGGGAGTAGGCACAGAGGTTAAAACCTAGTACTACTTTTGCTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGGGAGTAGGCACAGAGGTTAAAACCTAGTACTACTTTTGCTGTG  743

seq1  GGCTTGAGTTTTAGCCCCCATCTGACAATGAATGGTTGTAGCCAGTGACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGTTTTAGCCCCCATCTGACAATGAATGGTTGTAGCCAGTGACT  793

seq1  CCAGCTCCAAGGGACCAGATGCTCTCTTCTGGCTTCCAAGATCACCATGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCAAGGGACCAGATGCTCTCTTCTGGCTTCCAAGATCACCATGC  843

seq1  TCGCTGCCTCCCTACCCTTACATAAGTTTTAAGACAATAATAAGTAAAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGCCTCCCTACCCTTACATAAGTTTTAAGACAATAATAAGTAAAGT  893

seq1  TGGGGTGTAATGTGAATAAATATTTAAACCATGTACAGAACTCACTAACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTAATGTGAATAAATATTTAAACCATGTACAGAACTCACTAACC  943

seq1  AGCCCTTTCCCATCTGTCACCACCAACATCATAGCTTTAGTGTCTGTGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTCCCATCTGTCACCACCAACATCATAGCTTTAGTGTCTGTGGC  993

seq1  ATCTGCATTTTTCGGTGTCACGGATAAGTGAGGTCATGTGTGGCTTGTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATTTTTCGGTGTCACGGATAAGTGAGGTCATGTGTGGCTTGTCT  1043

seq1  TTCTGTACCAAGGCAGTTCTTCACTTTCAGTTGTTTACAGTGTAAAACTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTACCAAGGCAGTTCTTCACTTTCAGTTGTTTACAGTGTAAAACTC  1093

seq1  GATTTCAAAATTGCATACAGAATTC  1123
      |||||||||||||||||||||||||
seq2  GATTTCAAAATTGCATACAGAATTC  1118

seq1: chr15_5220188_5220748
seq2: B6Ng01-021C22.g_366_931 (reverse)

seq1  ACGGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAA  50
      ||||||||||||||||||   |||||||| ||||||| |||| |||||||
seq2  ACGGCAGGAAATAATCAACTCCAGGGGTG-AATCAACAAAGT-GAAACAA  48

seq1  GAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAA  100
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAG-ACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTGAGAAA  97

seq1  ATCAACAAGATAGATAAACCCTTAGCTAGACTC-ACT-AAAGGGCACAGG  148
      ||||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  ATCAACAAGATAGATAAACCCTTAGCTAGACTCAACTAAAAGGGCACAGG  147

seq1  GAC-AAAATCCTAATT-AACAAAATCAGAAATG-AAAAGGGAGACATAAC  195
      ||| |||||||||||| |||||||||||||||| ||||||||||||||||
seq2  GACAAAAATCCTAATTAAACAAAATCAGAAATGAAAAAGGGAGACATAAC  197

seq1  AACAGATCCTG-AAGAAATCC-AAAACACTATCAGATCCTTCTACAAAAG  243
      ||||||||||| ||||||||| ||||||| ||||||||||||||||||||
seq2  AACAGATCCTGAAAGAAATCCAAAAACACAATCAGATCCTTCTACAAAAG  247

seq1  GCTATACTCAACAAAACTGGAAAACCTGGATG-AAATGGACAAATTTCTG  292
      |||||||||||||||||||||||||||||| | |||||||||||||||||
seq2  GCTATACTCAACAAAACTGGAAAACCTGGACGAAAATGGACAAATTTCTG  297

seq1  GACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCTTCTAAA  347

seq1  CAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAG  397

seq1  CCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACC  447

seq1  TTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAAGATCTAACTCCAGTTCTGCACAAACTTTTTCACAAGATAGA  497

seq1  AGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGGTATTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGA  547

seq1  TACCTAAACCACAGAAAGA  561
      |||||||||||||||||||
seq2  TACCTAAACCACAGAAAGA  566