BAC Information

Click to search

BAC

Clone NameB6Ng01-022H06
Chromosome15 (Build37)
Map Location 13,612,678 - 13,613,717
singlet/doubletsinglet
Overlap genenone
Upstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
Downstream geneLOC666708, LOC674819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-022H06.bB6Ng01-022H06.g
ACCDH854663DH854664
length8681,035
definitionDH854663|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H06, 5' end.DH854664|Mus musculus domesticus DNA, BAC clone: B6Ng01-022H06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacaataagggaatctcaaatggccgaaaagcacttgaaaaaaaa
aatgttcaagctctttagtcatcagaggaatgccagtgaaaacaacacta
agattctatcttatgccaatcagaatggctaagatcaaaaactctggtga
cagcacatgctggagaagacatggagaaagaggaacactcctccattgct
gttgggattgcaatgtggtacaacaagtctggaaatcaatctggaggttc
ctcagaaaactggaaatagatctaccggaagacccaactctaccactctt
gggcatatctcaaaaaaaaaaaaaaaaggcacaccatatcacaagaacaa
gttctccactatgctcataccagacttatttgtaattgtcagaagctaga
aacaattcagatgtccttcaatggaataatggatacagaaaatgtggttc
atttacacaatgtaattcttttaaactattaagtatgagggcatcataga
tttcccaggcaaatagatgagaatagaaaatatcatcctgagtaaggtaa
ctcagcctccaaaacacatgcattgcatgtactcactgataagtggatat
tatcaaaaaaaaaaatgcagaatagcttgtatacaacccacagactgaaa
gtttaacaagcagaaaggcccaaatgaggatacttcaattccacttagaa
gggggaaaaaataatcactagaggcagagggatggagggacctcaatgga
aaaggggaggaggagggtgaaatggggagcaagaccatgtatggatgtgg
ggcaggagcaaagcctaaagaggcaggagaaatatgcagtctcaagggtg
ggagggtggggggaactc

gaattcagagaggcccatgactgcacaaaatgttgagaatacatagccta
aaacattacatttacactatatctgtaatgctcaaagaaccacaacagct
tagtaggaagaaaatgaatgatctaaatataggggaaagggctgtgaaat
gatatattttaagcacacacaaccatggcaagtgtaaacttaagtcagtt
gtgcttccttgctctatgcctacataaggttgggaaggctaagaataagc
tatggataaagaagggtctgatctggtcttagtgattaactatttacagc
tatgatatttggggagaggagatagtataatattcacttttttcctccac
tgatgaactcactagccccattatatacttttaaactcaaattcatatag
atgaacatatttaaactcagtgggacacaattatgtcatgaatatggaaa
agatatttgtaaggaagatgtggactggaaatggaggagaaaaagaagag
aaagcatggatgacctgggcatcccaacagagacatgaatggggtccccc
agagatgtaaatgacaaggtcatgttactatgtacaaatttgggacagtc
ctactagactgtagatttaaaattagtcaacataatttctcaagtgaaaa
cataaaaaagaatcagacatcagtatgaaataaaacagaaagataacaaa
agataaagaatgattgacccagaaattgaaaacatcttttatctatttgt
gaaggatcctgggtttttaagagtgtcacatactttcaaaacgatgtcca
agaatggagtcccgtgaggagaattcttgagtggttgtgagaaaccaaga
cttatgatctcagtttcttgaaaatcacagatttttattaattttattga
cttatgcttttgtgccctttctaggcatagcagattggatgagtttactt
tagttctttcattacaggaggctgttgtatttgttaattgcttctatgaa
aaaacatgggtcttttgttgtttggtgtgtgagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13612678_13613717
seq2: B6Ng01-022H06.g_69_1103

seq1  GAATTCAGAGAGGCCCATGACTGCACAAAATGTTGAGAATACATAGCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGGCCCATGACTGCACAAAATGTTGAGAATACATAGCCTA  50

seq1  AAACATTACATTTACACTATATCTGTAATGCTCAAAGAACCACAACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTACATTTACACTATATCTGTAATGCTCAAAGAACCACAACAGCT  100

seq1  TAGTAGGAAGAAAATGAATGATCTAAATATAGGGGAAAGGGCTGTGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGGAAGAAAATGAATGATCTAAATATAGGGGAAAGGGCTGTGAAAT  150

seq1  GATATATTTTAAGCACACACAACCATGGCAAGTGTAAACTTAAGTCAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTTTAAGCACACACAACCATGGCAAGTGTAAACTTAAGTCAGTT  200

seq1  GTGCTTCCTTGCTCTATGCCTACATAAGGTTGGGAAGGCTAAGAATAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCTTGCTCTATGCCTACATAAGGTTGGGAAGGCTAAGAATAAGC  250

seq1  TATGGATAAAGAAGGGTCTGATCTGGTCTTAGTGATTAACTATTTACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATAAAGAAGGGTCTGATCTGGTCTTAGTGATTAACTATTTACAGC  300

seq1  TATGATATTTGGGGAGAGGAGATAGTATAATATTCACTTTTTTCCTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATATTTGGGGAGAGGAGATAGTATAATATTCACTTTTTTCCTCCAC  350

seq1  TGATGAACTCACTAGCCCCATTATATACTTTTAAACTCAAATTCATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAACTCACTAGCCCCATTATATACTTTTAAACTCAAATTCATATAG  400

seq1  ATGAACATATTTAAACTCAGTGGGACACAATTATGTCATGAATATGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACATATTTAAACTCAGTGGGACACAATTATGTCATGAATATGGAAA  450

seq1  AGATATTTGTAAGGAAGATGTGGACTGGAAATGGAGGAGAAAAAGAAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTGTAAGGAAGATGTGGACTGGAAATGGAGGAGAAAAAGAAGAG  500

seq1  AAAGCATGGATGACCTGGGCATCCCAACAGAGACATGAATGGGGTCCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGGATGACCTGGGCATCCCAACAGAGACATGAATGGGGTCCCCC  550

seq1  AGAGATGTAAATGACAAGGTCATGTTACTATGTACAAATTTGGGACAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGTAAATGACAAGGTCATGTTACTATGTACAAATTTGGGACAGTC  600

seq1  CTACTAGACTGTAGATTTAAAATTAGTCAACATAATTTCTCAAGTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGACTGTAGATTTAAAATTAGTCAACATAATTTCTCAAGTGAAAA  650

seq1  CATAAAAAAGAATCAGACATCAGTATGAAATAAAACAGAAAGATAACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAAAGAATCAGACATCAGTATGAAATAAAACAGAAAGATAACAAA  700

seq1  AGATAAAGAATGATTGACCCAGAAATTGAAAACATCTTTTATCTATTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAGAATGATTGACCCAGAAATTGAAAACATCTTTTATCTATTTGT  750

seq1  GAAGGATCCTGGGTTTTTAAGAGTGTCACATACTTTCAAAACGATGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATCCTGGGTTTTTAAGAGTGTCACATACTTTCAAAACGATGTCCA  800

seq1  AGAATGGAGTCCCGTGAGGAGAATTC-TGAGTGGTTGTGAGAAACCAAGA  849
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAATGGAGTCCCGTGAGGAGAATTCTTGAGTGGTTGTGAGAAACCAAGA  850

seq1  CTTATGATCTCAGTTTCTTGAAAATCACAGAATTTTTATTTAATTTTATT  899
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  CTTATGATCTCAGTTTCTTGAAAATCACAG-ATTTTTA-TTAATTTTATT  898

seq1  GACTTATGCTTTTGTGCCCTTTCTAGGCATAGCAGATTGGAATGAGTTTA  949
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GACTTATGCTTTTGTGCCCTTTCTAGGCATAGCAGATTGG-ATGAGTTTA  947

seq1  CTTTAGTTCTTTCATTACAGGAGGCTGTTGTTATTTGTTTATATGCTTCT  999
      |||||||||||||||||||||||||||||| |||||||| || |||||||
seq2  CTTTAGTTCTTTCATTACAGGAGGCTGTTG-TATTTGTTAAT-TGCTTCT  995

seq1  ATGAAAAAACATGGTTCTTTTGTTTGTTTGGTGTGTGAGTG  1040
      |||||||||||||| ||||||| ||||||||||||||||||
seq2  ATGAAAAAACATGGGTCTTTTG-TTGTTTGGTGTGTGAGTG  1035


| Home | SequenceCutter | Blast | Download |