BAC Information

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BAC

Clone NameB6Ng01-024D15
Chromosome15 (Build37)
Map Location 54,125,166 - 54,248,180
singlet/doubletdoublet
Overlap geneLOC665280, EG383032, Colec10
Upstream geneExt1, Samd12, EG665097, EG621631, Tnfrsf11b
Downstream geneMal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2, 2600005O03Rik, Depdc6, Col14a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-024D15.bB6Ng01-024D15.g
ACCDH855928DH855929
length5171,051
definitionDH855928|Mus musculus domesticus DNA, BAC clone: B6Ng01-024D15, 5' end.DH855929|Mus musculus domesticus DNA, BAC clone: B6Ng01-024D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,247,661 - 54,248,180)(54,125,166 - 54,126,061)
sequence
cttactttttccccatcgttgtgcaagggagaaaaaccaggcttttgata
tcttttgccccaaagctcatttaatccccattaaaagcccactattccaa
ctttaggaataaatgatgttaagtccaggtggaaaagtagagaaagggaa
atgcaagtaaatgaaaactggggtctcggaattgtgtgccctggaaaact
gaaggtgagtttgaggtgggactagaagctaatatgaagttccaaaaagg
ggcaaaaagttgtgatcttcccaggggaggtgcatttgtaaagccaattt
gttaagcctataaatgaatttttgaatggaagtggagagaaagctagttt
atggtgacctgtaagagcaacagaagggtgcagaaaaaataattataact
gagatgcatgctagaattacctttgttttaaaataattttttaatgggta
tgacacccatctctcccatttacagttgagggcaccaaattttttaggca
gcaaggcttattatata
gaattctttgtttagctctgtaccccatttttaatggggttatttgaatt
tctggagtcctgcttcttaagctctttgtatatattaaatatttgtcccc
tatcagatttaggattggtaaaaatcctttcccaatctgttggtggcctt
tttgtcttattgacaatgtcttttgccttacagaaattttgcaattttat
gaggtcgcatttgtcaattcttgatgttacagcataagccattgctgttc
tgttcaggaatttttcccctgtgcccatatcctcgaggcttttccccact
ttctcctctataagtttcactgtctctgattttatgtggatgtctttgat
ctacttagacttgagctttgtacaaggagataaaaatggacattttatta
aagagaactgattttccctttcacaatgggtatcaactgcaaatagcttc
ttgtctttgtgtctacttctgctctgcagtgctggaattttgtcttgttt
gaacctgttcagatcttatgtgatcccacagttctatgagttcatatgtg
tatcactactgtgcacctgaaagatgctgcctctgtggactcatcttcca
cctctgcctcttacaatctgcccatcccctcttctgcagaggtttctgtt
gattttttaaaatttcattttcatttgtatttaggtatatgggtatatgt
ctatatggacttgtaccatatgtgtcggggtgccagaggatgccaagggc
gtccaatacacttggcaatggagttagacagacagtgtgagcactgggga
cagaacagagcagatagcacttttgaaccactgagccatctctccaggtc
tttgctattgcattttaaagaagttgctggtatgcaggttaacattaaaa
tttgttgttatcatcgttcctcatacttcaatatttatctttccagggtt
cttcctcaagctactgaattttctactatatataaatgagtgctgtgcct
gagcatttgtggcattgtttctttcacccagtcgggaccttctttttccc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_54247661_54248180
seq2: B6Ng01-024D15.b_23_517 (reverse)

seq1  TATATAATAATATGTATACATATATGTATATAATTAGCCTTGCTGCCTAA  50
                                |||||||| |||||||||||||||
seq2  --------------------------TATATAATAAGCCTTGCTGCCTAA  24

seq1  AATTTTTGGTGCCCTCAACTGTAAATGGGAGAGATGGGTGTCATACCCAT  100
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGGTGCCCTCAACTGTAAATGGGAGAGATGGGTGTCATACCCAT  74

seq1  TAAAAGCTTATTTTAAAACAAAGGTAATTCTAGCATGCATCTCAGTTATA  150
      |||||  |||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTATTTTAAAACAAAGGTAATTCTAGCATGCATCTCAGTTATA  124

seq1  ATTATTTTTTCTGCCCCCTTCTGTTGCTCTTACTGGTCACCATAAACTTG  200
      |||||||||||||| |||||||||||||||||| |||||||||||||| |
seq2  ATTATTTTTTCTGCACCCTTCTGTTGCTCTTACAGGTCACCATAAACTAG  174

seq1  CTTTCTCTCCACTTCCATTCAAAAATTCATTTATAGGCTTAACAAATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCCACTTCCATTCAAAAATTCATTTATAGGCTTAACAAATTGG  224

seq1  CTTTACAAATGCACCTCCCCTGGGAAGATCACAACTTTTTGCCCCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAAATGCACCTCCCCTGGGAAGATCACAACTTTTTGCCCCTTTTT  274

seq1  GGAACTTCATATTAGCTTCTAGTCCCACCTCAAACTCACCTTCAGTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTCATATTAGCTTCTAGTCCCACCTCAAACTCACCTTCAGTTTTC  324

seq1  CAGGGCACACAATTCCGAGACCCCAGTTTTCATTTACTTGCATTTCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACACAATTCCGAGACCCCAGTTTTCATTTACTTGCATTTCCCTT  374

seq1  TCTCTACTTTTCCACCTGGACTTAACATCATTTATTCCTAAAGTTGGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTTTCCACCTGGACTTAACATCATTTATTCCTAAAGTTGGAAT  424

seq1  AGTGGGCTTTTAATGGGGATTAAATGAGCTTTGGGGCAAATGATATC-AA  499
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  AGTGGGCTTTTAATGGGGATTAAATGAGCTTTGGGGCAAAAGATATCAAA  474

seq1  AGCCTGGTTTTTCTCACTTGC  520
      ||||||||||||||| |||||
seq2  AGCCTGGTTTTTCTCCCTTGC  495

seq1: chr15_54125166_54126061
seq2: B6Ng01-024D15.g_218_1118

seq1  TTTGTCTTATTGACAATGTCTTTTGCCTTACAGAAATTTTGCAATTTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTATTGACAATGTCTTTTGCCTTACAGAAATTTTGCAATTTTAT  50

seq1  GAGGTCGCATTTGTCAATTCTTGATGTTACAGCATAAGCCATTGCTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCGCATTTGTCAATTCTTGATGTTACAGCATAAGCCATTGCTGTTC  100

seq1  TGTTCAGGAATTTTTCCCCTGTGCCCATATCCTCGAGGCTTTTCCCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGGAATTTTTCCCCTGTGCCCATATCCTCGAGGCTTTTCCCCACT  150

seq1  TTCTCCTCTATAAGTTTCACTGTCTCTGATTTTATGTGGATGTCTTTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTCTATAAGTTTCACTGTCTCTGATTTTATGTGGATGTCTTTGAT  200

seq1  CTACTTAGACTTGAGCTTTGTACAAGGAGATAAAAATGGACATTTTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGACTTGAGCTTTGTACAAGGAGATAAAAATGGACATTTTATTA  250

seq1  AAGAGAACTGATTTTCCCTTTCACAATGGGTATCAACTGCAAATAGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAACTGATTTTCCCTTTCACAATGGGTATCAACTGCAAATAGCTTC  300

seq1  TTGTCTTTGTGTCTACTTCTGCTCTGCAGTGCTGGAATTTTGTCTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTTGTGTCTACTTCTGCTCTGCAGTGCTGGAATTTTGTCTTGTTT  350

seq1  GAACCTGTTCAGATCTTATGTGATCCCACAGTTCTATGAGTTCATATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTTCAGATCTTATGTGATCCCACAGTTCTATGAGTTCATATGTG  400

seq1  TATCACTACTGTGCACCTGAAAGATGCTGCCTCTGTGGACTCATCTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTACTGTGCACCTGAAAGATGCTGCCTCTGTGGACTCATCTTCCA  450

seq1  CCTCTGCCTCTTACAATCTGCCCATCCCCTCTTCTGCAGAGGTTTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTCTTACAATCTGCCCATCCCCTCTTCTGCAGAGGTTTCTGTT  500

seq1  GATTTTTTAAAATTTCATTTTCATTTGTATTTAGGTATATGGGTATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTAAAATTTCATTTTCATTTGTATTTAGGTATATGGGTATATGT  550

seq1  CTATATGGACTTGTACCATATGTGTCGGGGTGCCAGAGGATGCCAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATGGACTTGTACCATATGTGTCGGGGTGCCAGAGGATGCCAAGGGC  600

seq1  GTCCAATACAC-TGGCAATGGAGTTAGACAGACAGTGTGAGCACTGGGGA  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCCAATACACTTGGCAATGGAGTTAGACAGACAGTGTGAGCACTGGGGA  650

seq1  CAGAACAGAGCAGAAAGCAC-TTTGAACCACTGAGCCATCTCTCCAGGTC  698
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  CAGAACAGAGCAGATAGCACTTTTGAACCACTGAGCCATCTCTCCAGGTC  700

seq1  TTTGCTATTGCATTTTAAAG-AGTTGCTGGTATGCAGGTTAACAGTAAAA  747
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  TTTGCTATTGCATTTTAAAGAAGTTGCTGGTATGCAGGTTAACATTAAAA  750

seq1  -TTGTTG-TATCATCGTTTCTCATACTTCAATATTTATCTTTCCAGGGTT  795
       |||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  TTTGTTGTTATCATCGTTCCTCATACTTCAATATTTATCTTTCCAGGGTT  800

seq1  CTTCCTCAGGCTACTGAATTTTCCACATAATATAAATGAGTGCTGTTGCC  845
      |||||||| |||||||||||||| ||   |||||||||||||||| ||||
seq2  CTTCCTCAAGCTACTGAATTTTCTACTATATATAAATGAGTGCTG-TGCC  849

seq1  TGAGCATTTGT-GCATTGTTACTTTCACCCAGTCGGGAGCTTCTTTTACC  894
      ||||||||||| |||||||| ||||||||||||||||| |||||||| ||
seq2  TGAGCATTTGTGGCATTGTTTCTTTCACCCAGTCGGGACCTTCTTTTTCC  899

seq1  CT  896
      ||
seq2  CT  901