BAC Information

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BAC

Clone NameB6Ng01-025F21
Chromosome15 (Build37)
Map Location 9,287,995 - 9,452,078
singlet/doubletdoublet
Overlap geneUgt3a2, LOC383094, Capsl, Il7r
Upstream geneNipbl, EG666437, LOC100039560, LOC100039633, Slc1a3, EG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661
Downstream geneC230086A09Rik, Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025F21.bB6Ng01-025F21.g
ACCDH856739DH856740
length1,1221,103
definitionDH856739|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F21, 5' end.DH856740|Mus musculus domesticus DNA, BAC clone: B6Ng01-025F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,287,995 - 9,289,123)(9,450,973 - 9,452,078)
sequence
gaattcatgaaattcttaggcaaatggatgtatctggaggatatccattt
gtgagggcgtaccatgtgtgttcttttgcaattgggttacttctctcagt
atgatattttctagttctacccatttgcttaagaatttcatgaattcatc
attttaatagatgagtagtactccattgtgtgaatgtaccacattttctg
tatccattcctctgttgaaggacatttgggttctttccaagtctacatag
tggagcatgtgtccttataatatgttggagcatcttctgggtatatgctg
ggtcatcgggtactatgcccaattttctgaggaacggctagactgatttc
cagagtggttgtaccagcttgccatcccaccagcaatggaggagtgtgga
aacaactttctacgtgttttttgcttttaattaaaaaacatactttattt
tgtgaaaagccatatggtttccataggaagtaaaactaatgattgtctat
ctttaaacagaataaaacaataagtcaggctacagagcctctttccataa
aacatattagaaatcatttttatctaagtgagtcacaattttatttagct
caggcactgctggcctcaaagtcacaatcctaagactgaccttaaactct
tgatcctcctgtctccatttccagagtgttgaaattacaggcttgtgttt
atctagctgcagaactatttctttattttctttatatttttattatttaa
atgcatttaatacatcgagcacagtaatactattgattgtcttgaatatc
aaaatattacatagatgttcagaattgagagttcatcttggtagatttta
cctttgtttgagtatgaagtgtccctccttgtgttatttgataactttta
ggttgcaagttgattttattcgaaattagaatggcctaatagaacagcta
ttccaacttgtttctttggaccattgattgaaaattgttttccagtcttt
tactctgaggtagtgtctgttttgtccatgaggtaggttcctgtatacag
caaatgcgggtcttgttacgtaaccagctgttcatcatgtcatttattgg
agaatgagtcattgatattacg
gaattccaatactaaagctaactagcccagtgaccagggagatattcaga
ccagcatcacagcaactgacttacactggattacatctggttaatgcctg
gcatgtgggaggtacctgtaaatggcacttgactccttcagtatgaacat
ttccacataaaataaatataggggaaaaagcaggggcaactatctgctac
ttttactaccaccaattggacaatctctcagtgcaattcacataaaaata
ttatttatcatcattcaaaagtcagatatgtcttttgggggggagctcat
tcaatttctatcactttccacaaaagcagtcatactctgttccacgtttt
ctgggccctgatattactgccacatactacctacaactttgaatatctca
ctatttttctccatgactgtcacctttacaggccagctgatgttataccc
cttagcagtgatatctatcaagtattgttaagtattcagtcctctggaca
gtaaattatactatctctctaaattgttcagtattttcaagccatatcct
gtctttcagggccatttttgttgttttgttttgtttgattgattgattga
ttgattgatcgatcgatcgattgatcgatggatagattttgttatatttt
gtttttctgccattttttcccttcagtctgaacatctgtttatataggta
agacaaatgcatctctcatactaaattgtacaagactggagaagaaagag
aaaaatggaattaaaatttaggttaaatgatctttagccatcactctcta
cattcagaaccagatttgaaaatgtgacttagggccagtgtcccaggtca
tggcatacaagatcagaatcatcaactatatatgtattactgagtataac
tgtgatcttccatttgtcacacatattctagaacatctctagtcattata
aatataatgcagtccataatctatgagcacattggtcattttaatatttt
aaattaatatttttaaaaatttatggtttgtgttggtgtaattgcatgta
ttaacaccaaatgtgcatgattgaagcacaccttatgtctgtgtgtatat
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_9287995_9289123
seq2: B6Ng01-025F21.b_44_1165

seq1  GAATTCATGAAATTCTTAGGCAAATGGATGTATCTGGAGGATATCCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAAATTCTTAGGCAAATGGATGTATCTGGAGGATATCCATTT  50

seq1  GTGAGGGCGTACCATGTGTGTTCTTTTGCAATTGGGTTACTTCTCTCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGCGTACCATGTGTGTTCTTTTGCAATTGGGTTACTTCTCTCAGT  100

seq1  ATGATATTTTCTAGTTCTACCCATTTGCTTAAGAATTTCATGAATTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTTCTAGTTCTACCCATTTGCTTAAGAATTTCATGAATTCATC  150

seq1  ATTTTAATAGATGAGTAGTACTCCATTGTGTGAATGTACCACATTTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATAGATGAGTAGTACTCCATTGTGTGAATGTACCACATTTTCTG  200

seq1  TATCCATTCCTCTGTTGAAGGACATTTGGGTTCTTTCCAAGTCTACATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATTCCTCTGTTGAAGGACATTTGGGTTCTTTCCAAGTCTACATAG  250

seq1  TGGAGCATGTGTCCTTATAATATGTTGGAGCATCTTCTGGGTATATGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATGTGTCCTTATAATATGTTGGAGCATCTTCTGGGTATATGCTG  300

seq1  GGTCATCGGGTACTATGCCCAATTTTCTGAGGAACGGCTAGACTGATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATCGGGTACTATGCCCAATTTTCTGAGGAACGGCTAGACTGATTTC  350

seq1  CAGAGTGGTTGTACCAGCTTGCCATCCCACCAGCAATGGAGGAGTGTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGTTGTACCAGCTTGCCATCCCACCAGCAATGGAGGAGTGTGGA  400

seq1  AACAACTTTCTACGTGTTTTTTGCTTTTAATTAAAAAACATACTTTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTTCTACGTGTTTTTTGCTTTTAATTAAAAAACATACTTTATTT  450

seq1  TGTGAAAAGCCATATGGTTTCCATAGGAAGTAAAACTAATGATTGTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAAGCCATATGGTTTCCATAGGAAGTAAAACTAATGATTGTCTAT  500

seq1  CTTTAAACAGAATAAAACAATAAGTCAGGCTACAGAGCCTCTTTCCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAACAGAATAAAACAATAAGTCAGGCTACAGAGCCTCTTTCCATAA  550

seq1  AACATATTAGAAATCATTTTTATCTAAGTGAGTCACAATTTTATTTAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTAGAAATCATTTTTATCTAAGTGAGTCACAATTTTATTTAGCT  600

seq1  CAGGCACTGCTGGCCTCAAAGTCACAATCCTAAGACTGACCTTAAACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTGCTGGCCTCAAAGTCACAATCCTAAGACTGACCTTAAACTCT  650

seq1  TGATCCTCCTGTCTCCATTTCCAGAGTGTTGAAATTACAGGCTTGTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTCCTGTCTCCATTTCCAGAGTGTTGAAATTACAGGCTTGTGTTT  700

seq1  ATCTAGCTGCAGAACTATTTCTTTA-TTTCTTTATATTTTTATTATTTAA  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCTAGCTGCAGAACTATTTCTTTATTTTCTTTATATTTTTATTATTTAA  750

seq1  ATGCATTTAATACATCGAGCACAGTAATACTATTGATTGTCTTGAATATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAATACATCGAGCACAGTAATACTATTGATTGTCTTGAATATC  800

seq1  -AAATATTACATAGATGTTCAGAATTGAGAGTTCATCTTGGTAGATTTTA  848
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTACATAGATGTTCAGAATTGAGAGTTCATCTTGGTAGATTTTA  850

seq1  CCTTTG-TTGAGTATGAAGTGTCCCTCCTTGTGTTATTTGATAAC-TTTA  896
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  CCTTTGTTTGAGTATGAAGTGTCCCTCCTTGTGTTATTTGATAACTTTTA  900

seq1  GGTTGCAAGTTGATTTTATTCGAAATTAGAATGG-CTAATAGAACAAGCT  945
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  GGTTGCAAGTTGATTTTATTCGAAATTAGAATGGCCTAATAGAAC-AGCT  949

seq1  ATTCCAACTTGTTTCTTTGGACCATTTGATTGAAAAATTGTTTTCCAGTC  995
      |||||||||||||||||||||||| ||||||| |||||||||||||||||
seq2  ATTCCAACTTGTTTCTTTGGACCA-TTGATTG-AAAATTGTTTTCCAGTC  997

seq1  TTTTACTCTGAGGTAGTGTCTGTTTTGTCCATGAGGTGGGTTTCCTGTAT  1045
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  TTTTACTCTGAGGTAGTGTCTGTTTTGTCCATGAGGTAGG-TTCCTGTAT  1046

seq1  ACAGCAAAATGCGGGTCTTGTTTACGTAACCAGTCTGTTCATCTATGTCT  1095
      ||||| |||||||||||||| |||||||||||| ||||||||| ||||| 
seq2  ACAGC-AAATGCGGGTCTTG-TTACGTAACCAG-CTGTTCATC-ATGTC-  1091

seq1  ATTTTATTGGAGAATTGAGTCCATTGATATTAAG  1129
        |||||||||||| ||||| ||||||||||| |
seq2  -ATTTATTGGAGAA-TGAGT-CATTGATATTACG  1122

seq1: chr15_9450973_9452078
seq2: B6Ng01-025F21.g_65_1167 (reverse)

seq1  CACACATACACACGTACAT-ACGTGTGCATCAATGCATGCACATTT-GTG  48
      |||| ||||||||  |||| | |||||| ||||| ||||||||||| |||
seq2  CACATATACACACAGACATAAGGTGTGCTTCAAT-CATGCACATTTGGTG  49

seq1  TATATACATGCATATACACAAACACAAACACTAAATTTATTAAAAATATA  98
      |  |||||||||  ||||| |||||||||  ||||||| |||||||||| 
seq2  TTAATACATGCAATTACACCAACACAAACCATAAATTT-TTAAAAATATT  98

seq1  ATTTAAAAATATTTAAAATGACCAATGTGCTCATAGATTTATGGACTGCA  148
      | || |||||| ||||||||||||||||||||||||| ||||||||||||
seq2  AATTTAAAATA-TTAAAATGACCAATGTGCTCATAGA-TTATGGACTGCA  146

seq1  TTATATTTATATTGACTAGAGATGTTCTAGAATATGTGTGAC-AATGGAA  197
      ||||||||||| |||||||||||||||||||||||||||||| |||||||
seq2  TTATATTTATAATGACTAGAGATGTTCTAGAATATGTGTGACAAATGGAA  196

seq1  GATCACAGTTATTACTCAAGTAATACATATATAGTTGATGATTCTGATCT  247
      ||||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  GATCACAGTTA-TACTC-AGTAATACATATATAGTTGATGATTCTGATCT  244

seq1  TGTATGCCATGACTTGGGACACTGGCCCTAAGTCACATTTTCAAATCTGG  297
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTATGCCATGACCTGGGACACTGGCCCTAAGTCACATTTTCAAATCTGG  294

seq1  TTCTGAATGTAGAGAGTGATGGCTAAAGATCATTTAACCTAAATTTTAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATGTAGAGAGTGATGGCTAAAGATCATTTAACCTAAATTTTAAT  344

seq1  TCCATTTTTCTCTTTCTTCTCCAGTCTTGTACAATTTAGTATGAGAGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTCTCTTTCTTCTCCAGTCTTGTACAATTTAGTATGAGAGATG  394

seq1  CATTTGTCTTACCTATATAAACAGATGTTCAGACTGAAGGGAAAAAATGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTCTTACCTATATAAACAGATGTTCAGACTGAAGGGAAAAAATGG  444

seq1  CAGAAAAACAAAATATAACAAAATCTATCCATCGATCAATCGATCGATCG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAACAAAATATAACAAAATCTATCCATCGATCAATCGATCGATCG  494

seq1  ATCAATCAATCAATCAATCAATCAAACAAAACAAAACAACAAAAATGGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCAATCAATCAATCAATCAAACAAAACAAAACAACAAAAATGGCC  544

seq1  CTGAAAGACAGGATATGGCTTGAAAATACTGAACAATTTAGAGAGATAGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGACAGGATATGGCTTGAAAATACTGAACAATTTAGAGAGATAGT  594

seq1  ATAATTTACTGTCCAGAGGACTGAATACTTAACAATACTTGATAGATATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTACTGTCCAGAGGACTGAATACTTAACAATACTTGATAGATATC  644

seq1  ACTGCTAAGGGGTATAACATCAGCTGGCCTGTAAAGGTGACAGTCATGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAAGGGGTATAACATCAGCTGGCCTGTAAAGGTGACAGTCATGGA  694

seq1  GAAAAATAGTGAGATATTCAAAGTTGTAGGTAGTATGTGGCAGTAATATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAGTGAGATATTCAAAGTTGTAGGTAGTATGTGGCAGTAATATC  744

seq1  AGGGCCCAGAAAACGTGGAACAGAGTATGACTGCTTTTGTGGAAAGTGAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCAGAAAACGTGGAACAGAGTATGACTGCTTTTGTGGAAAGTGAT  794

seq1  AGAAATTGAATGAGCTCCCCCCCAAAAGACATATCTGACTTTTGAATGAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGAATGAGCTCCCCCCCAAAAGACATATCTGACTTTTGAATGAT  844

seq1  GATAAATAATATTTTTATGTGAATTGCACTGAGAGATTGTCCAATTGGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATAATATTTTTATGTGAATTGCACTGAGAGATTGTCCAATTGGTG  894

seq1  GTAGTAAAAGTAGCAGATAGTTGCCCCTGCTTTTTCCCCTATATTTATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAAAGTAGCAGATAGTTGCCCCTGCTTTTTCCCCTATATTTATTT  944

seq1  TATGTGGAAATGTTCATACTGAAGGAGTCAAGTGCCATTTACAGGTACCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGAAATGTTCATACTGAAGGAGTCAAGTGCCATTTACAGGTACCT  994

seq1  CCCACATGCCAGGCATTAACCAGATGTAATCCAGTGTAAGTCAGTTGCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATGCCAGGCATTAACCAGATGTAATCCAGTGTAAGTCAGTTGCTG  1044

seq1  TGATGCTGGTCTGAATATCTCCCTGGTCACTGGGCTAGTTAGCTTTAGTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTGGTCTGAATATCTCCCTGGTCACTGGGCTAGTTAGCTTTAGTA  1094

seq1  TTGGAATTC  1106
      |||||||||
seq2  TTGGAATTC  1103