BAC Information

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BAC

Clone NameB6Ng01-025J03
Chromosome15 (Build37)
Map Location 24,718,490 - 24,924,705
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
Downstream geneLOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-025J03.bB6Ng01-025J03.g
ACCDH856878DH856879
length1,1851,047
definitionDH856878|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J03, 5' end.DH856879|Mus musculus domesticus DNA, BAC clone: B6Ng01-025J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,718,490 - 24,719,692)(24,923,654 - 24,924,705)
sequence
gaattcttcagacagagtgagttgaaaattttcatgaagtacttacttat
aaatactctttggagcatcatttaaggagctaagaaaatcaatcaagaaa
aagtactaggaaaaactattgagatatagaccgatattggagagaaataa
acctttaagaagacagttgcataggactgaaaataattcttgaggcccca
gttaaagaaaaagactcttaagaggaaatctaataataacatcatttcct
ctacttcattttacatgatacaatttcagtaatctaaaagttaatgctca
gaggtagccaatgaaaaactgcacaacttttagacataaatattggccat
gcaaagaggttttcaaataagaagacatgtgaatgttagtctcaccagaa
tttttgtgtataaagagtatatgtgcttggtaaaactgagtgggttctaa
acttcaataatgtttcaaattaaaatgtcacatatttctaatcaactaga
ataaatgaaacataaatctactattcagctgtgatagtcctacaacacat
gcaaaaatgtctgaatatcaaagagaaagatgtatttctgactgatttct
agttttgtgaatttctttcaatatcacctttcagcatcacagtagctgac
cccatcctaaggacttggacttagagctttttctgcttctctactatggc
tctatgagaaaattagtcatgatattccatggacatgaagcattctgctt
gagtttccacttctaatactaagcattactaactgcaatggctactttgg
gttgtcagcttgactgtaagtgaaatgaaatgcaatccagaaatgggggg
cacacctttgatccagatcttgagccaagaagacaacatgcctttgatct
tggatcttgaagcagatgacacatgtctttagcccagacctggaggcagg
aggacacacctttaatccaggccacacctctactggacgtctatataagg
acatggaagaggaagggtcatttgcttgctagcacatccatccttcactg
gcatagaacctactacccagagttagcatatacagatgaacagcctgagc
acccagctggactagattctggaattccttcagcttcacactgtgaagta
ctgggattaacctgtaattataacatattaatata
gaattcttaaaatataaaagaaaacattttaaatcccttgagaaaacttt
gaatgtttttctacttctattgttacaattaatttttcctctgctgtcaa
atggctaaagtttgaattatttaaacattactaggtatcttgcttatcta
atgactgagagatatgtagaaatcccttatgacattgatcaaaattgtaa
atatctccctttatagaaatattcgcttgtactgctttctttgtttctgc
tgaaattggaatatgaagctttgatatgaaaaaatatgtagcattgctta
atctgaacaaaaaagattcttttcaaattttagtaaaattatttaatcgt
gtaaaaccttaagacttctttcatttttcttctcaacaacaaattctaac
actttactttctgtttgctcctattttaaagagccaatccatatttcttt
ctgtgtgctattaaacttgatgtggaatttttgtattctcattcaaagat
tataacaaaactcattgaaaagtttcagggttaaattcataagagtcttt
ttacctactgcacacaaaggaccttgaattatgtgactggtggtatttaa
tatgtggagaaacatcaggagtgcccaggctcaaagacttctaagcactg
agacagaagagctctcagaacaggatgaataaatgccatcgggatctgta
ctttatgctgtgggcacaggtgtttagtggtccattttgataaaaagcat
ggtcaaaaaaactcaaagaggacacttggcattgcatcccattttttttc
taacaaagagtctttgggttaagaagcattctgtgaaattctatgagcta
ttagataagtacactggagaatgattgtttgtgcagagtgtggggtcctt
tcccttgcgtcatgaatgttttgcttttagatggagttgactatttaaag
aggataagagaagcgcagtgtgaaagcatatatattaaaacacagctcat
caactattgtcttgtagctcttgctgatcatgctctaactcaaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_24718490_24719692
seq2: B6Ng01-025J03.b_47_1231

seq1  GAATTCTTCAGACAGAGTGAGTTGAAAATTTTCATGAAGTACTTACTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGACAGAGTGAGTTGAAAATTTTCATGAAGTACTTACTTAT  50

seq1  AAATACTCTTTGGAGCATCATTTAAGGAGCTAAGAAAATCAATCAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTCTTTGGAGCATCATTTAAGGAGCTAAGAAAATCAATCAAGAAA  100

seq1  AAGTACTAGGAAAAACTATTGAGATATAGACCGATATTGGAGAGAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTAGGAAAAACTATTGAGATATAGACCGATATTGGAGAGAAATAA  150

seq1  ACCTTTAAGAAGACAGTTGCATAGGACTGAAAATAATTCTTGAGGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAGAAGACAGTTGCATAGGACTGAAAATAATTCTTGAGGCCCCA  200

seq1  GTTAAAGAAAAAGACTCTTAAGAGGAAATCTAATAATAACATCATTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAAAAAGACTCTTAAGAGGAAATCTAATAATAACATCATTTCCT  250

seq1  CTACTTCATTTTACATGATACAATTTCAGTAATCTAAAAGTTAATGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTCATTTTACATGATACAATTTCAGTAATCTAAAAGTTAATGCTCA  300

seq1  GAGGTAGCCAATGAAAAACTGCACAACTTTTAGACATAAATATTGGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGCCAATGAAAAACTGCACAACTTTTAGACATAAATATTGGCCAT  350

seq1  GCAAAGAGGTTTTCAAATAAGAAGACATGTGAATGTTAGTCTCACCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAGGTTTTCAAATAAGAAGACATGTGAATGTTAGTCTCACCAGAA  400

seq1  TTTTTGTGTATAAAGAGTATATGTGCTTGGTAAAACTGAGTGGGTTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGTATAAAGAGTATATGTGCTTGGTAAAACTGAGTGGGTTCTAA  450

seq1  ACTTCAATAATGTTTCAAATTAAAATGTCACATATTTCTAATCAACTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATAATGTTTCAAATTAAAATGTCACATATTTCTAATCAACTAGA  500

seq1  ATAAATGAAACATAAATCTACTATTCAGCTGTGATAGTCCTACAACACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAAACATAAATCTACTATTCAGCTGTGATAGTCCTACAACACAT  550

seq1  GCAAAAATGTCTGAATATCAAAGAGAAAGATGTATTTCTGACTGATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATGTCTGAATATCAAAGAGAAAGATGTATTTCTGACTGATTTCT  600

seq1  AGTTTTGTGAATTTCTTTCAATATCACCTTTCAGCATCACAGTAGCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTGAATTTCTTTCAATATCACCTTTCAGCATCACAGTAGCTGAC  650

seq1  CCCATCCTAAGGACTTGGACTTAGAGCTTTTTCTGCTTCTCTACTATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTAAGGACTTGGACTTAGAGCTTTTTCTGCTTCTCTACTATGGC  700

seq1  TCTATGAGAAAATTAGTCATGATATTCCATGGACATGAAGCATTCTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAGAAAATTAGTCATGATATTCCATGGACATGAAGCATTCTGCTT  750

seq1  GAGTTTCCACTTCTAATACTAAGCATTACTAACTGCAATGGCTACTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCCACTTCTAATACTAAGCATTACTAACTGCAATGGCTACTTTGG  800

seq1  GTTGTCAGCTTGACTGTAAGTGAAATGAAATGCAATCCAGAAATGGGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGCTTGACTGTAAGTGAAATGAAATGCAATCCAGAAATGGGGGG  850

seq1  CACACCTTTGATCCAGATCTTGAGCCAAGAAGACAACATGCCTTTGATC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACACCTTTGATCCAGATCTTGAGCCAAGAAGACAACATGCCTTTGATCT  900

seq1  TGGATCTTGAAGCAGGATGACACATGTCTTTAGCCCAGACCTGGAGGCAG  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGATCTTGAAGCA-GATGACACATGTCTTTAGCCCAGACCTGGAGGCAG  949

seq1  GAGGACACACCTTTAATCCAGGCCACACCTTCTACTGGACGTCTATATAA  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GAGGACACACCTTTAATCCAGGCCACACC-TCTACTGGACGTCTATATAA  998

seq1  GGACAATGGAAGAGGGAAGGGTTCATTTGCCTTGCTAGCACATCCATTCC  1049
      |||| |||||||| ||||||| ||||||| |||||||||||||||| |||
seq2  GGAC-ATGGAAGA-GGAAGGG-TCATTTG-CTTGCTAGCACATCCA-TCC  1043

seq1  TTCACTGGCATTAGAACCTACTTACTCAGGATTTTAGCATATACAGATGA  1099
      |||||||||| |||||||||| ||| |||    |||||||||||||||||
seq2  TTCACTGGCA-TAGAACCTAC-TACCCAG--AGTTAGCATATACAGATGA  1089

seq1  CCAG-CTGAGGCACCCAGCCTGTACTAGATTCTTGAATTTTCCATTCACA  1148
       ||| |||| |||||||| ||| |||||||||| |||||   | ||  ||
seq2  ACAGCCTGA-GCACCCAG-CTGGACTAGATTCTGGAATT---CCTT--CA  1132

seq1  GCTTCACACTGTTAGATTAGTTGGATTATAACCTGTAATTTATTACATAT  1198
      |||||||||||| | | || | ||||  |||||||||| |||| ||||||
seq2  GCTTCACACTGTGA-AGTACTGGGAT--TAACCTGTAA-TTATAACATAT  1178

seq1  --ATATA  1203
        |||||
seq2  TAATATA  1185

seq1: chr15_24923654_24924705
seq2: B6Ng01-025J03.g_66_1112 (reverse)

seq1  TGTTTTGAGTTAGAGCATGATCAGCAAGAGCTACAAGACAATAGTTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGAGTTAGAGCATGATCAGCAAGAGCTACAAGACAATAGTTGATG  50

seq1  AAGCTGTGTTTTAATATATATGCTTTCACACTGCGCTTCCTCTTATTCCT  100
       ||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  -AGCTGTGTTTTAATATATATGCTTTCACACTGCGCTT-CTCTTA-TCCT  97

seq1  CTTTTAAATAGTCAACTCCATCTAAAAAGCAAAACATTCATGACGCAAGG  150
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  C-TTTAAATAGTCAACTCCATCT-AAAAGCAAAACATTCATGACGCAAGG  145

seq1  GAAAGGACCCCACACTCTGCACAAACAATCATTCTCCAGTGTACTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACCCCACACTCTGCACAAACAATCATTCTCCAGTGTACTTATCT  195

seq1  AATAGCTCATAGAATTTCACAGAATGCTTCTTAACCCAAAGACTCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTCATAGAATTTCACAGAATGCTTCTTAACCCAAAGACTCTTTGT  245

seq1  TAGAAAAAAAATGGGATGCAATGCCAAGTGTCCTCTTTGAGTTTTTTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAAAAATGGGATGCAATGCCAAGTGTCCTCTTTGAGTTTTTTTGA  295

seq1  CCATGCTTTTTATCAAAATGGACCACTAAACACCTGTGCCCACAGCATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTTTTTATCAAAATGGACCACTAAACACCTGTGCCCACAGCATAA  345

seq1  AGTACAGATCCCGATGGCATTTATTCATCCTGTTCTGAGAGCTCTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGATCCCGATGGCATTTATTCATCCTGTTCTGAGAGCTCTTCTGT  395

seq1  CTCAGTGCTTAGAAGTCTTTGAGCCTGGGCACTCCTGATGTTTCTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCTTAGAAGTCTTTGAGCCTGGGCACTCCTGATGTTTCTCCACA  445

seq1  TATTAAATACCACCAGTCACATAATTCAAGGTCCTTTGTGTGCAGTAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATACCACCAGTCACATAATTCAAGGTCCTTTGTGTGCAGTAGGT  495

seq1  AAAAAGACTCTTATGAATTTAACCCTGAAACTTTTCAATGAGTTTTGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACTCTTATGAATTTAACCCTGAAACTTTTCAATGAGTTTTGTTA  545

seq1  TAATCTTTGAATGAGAATACAAAAATTCCACATCAAGTTTAATAGCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTGAATGAGAATACAAAAATTCCACATCAAGTTTAATAGCACAC  595

seq1  AGAAAGAAATATGGATTGGCTCTTTAAAATAGGAGCAAACAGAAAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAATATGGATTGGCTCTTTAAAATAGGAGCAAACAGAAAGTAAA  645

seq1  GTGTTAGAATTTGTTGTTGAGAAGAAAAATGAAAGAAGTCTTAAGGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGAATTTGTTGTTGAGAAGAAAAATGAAAGAAGTCTTAAGGTTTT  695

seq1  ACACGATTAAATAATTTTACTAAAATTTGAAAAGAATCTTTTTTGTTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGATTAAATAATTTTACTAAAATTTGAAAAGAATCTTTTTTGTTCAG  745

seq1  ATTAAGCAATGCTACATATTTTTTCATATCAAAGCTTCATATTCCAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCAATGCTACATATTTTTTCATATCAAAGCTTCATATTCCAATTT  795

seq1  CAGCAGAAACAAAGAAAGCAGTACAAGCGAATATTTCTATAAAGGGAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAACAAAGAAAGCAGTACAAGCGAATATTTCTATAAAGGGAGAT  845

seq1  ATTTACAATTTTGATCAATGTCATAAGGGATTTCTACATATCTCTCAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAATTTTGATCAATGTCATAAGGGATTTCTACATATCTCTCAGTC  895

seq1  ATTAGATAAGCAAGATACCTAGTAATGTTTAAATAATTCAAACTTTAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATAAGCAAGATACCTAGTAATGTTTAAATAATTCAAACTTTAGCC  945

seq1  ATTTGACAGCAGAGGAAAAATTAATTGTAACAATAGAAGTAGAAAAACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACAGCAGAGGAAAAATTAATTGTAACAATAGAAGTAGAAAAACAT  995

seq1  TCAAAGTTTTCTCAAGGGATTTAAAATGTTTTCTTTTATATTTTAAGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTTCTCAAGGGATTTAAAATGTTTTCTTTTATATTTTAAGAAT  1045

seq1  TC  1052
      ||
seq2  TC  1047