BAC Information

Click to search

BAC

Clone NameB6Ng01-026C06
Chromosome12 (Build37)15 (Build37)
Map Location 32,631,616 - 32,631,84667,695,937 - 67,696,922
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026C06.bB6Ng01-026C06.g
ACCDH857269DH857270
length683980
definitionDH857269|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C06, 5' end.DH857270|Mus musculus domesticus DNA, BAC clone: B6Ng01-026C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,846)(67,695,937 - 67,696,922)
sequence
gaattaaaaacaatgaatttatgaaattcttgagcaaatggatgtatctg
gaggatatcatcctgagtgaggtaacccaaacataaaagaagtcacttga
tatgcactcactgataagtggatattagcccagaaacctagaatacccaa
gatacaatttccataacacaagaaaatcaagaaggaagaccaatgcatgg
atacttcattcctccctagaataggaaataaaatatccatagaaggagtt
gcaaagacaaagtttggagctaagatgaaaggatggaccacaaagagact
gccccacctcataatcagccaccaaacacagacactattgcatatgccag
caagattttgctgaaaggaccctgatatagctgtctcctgtgaggctttg
ccagtgcctagcaaatacagaagtggatgctcacagtcatctattggatg
gaacacagggatcccaatggaggagctagagaaagtacccaaggagctga
aggggtctgcagccctataggtggaacaacaatatgaactaaccagaacc
cccagagctcgtgtttctagctgcataagtggcagaagatggcctggtcg
gccatcattgggaagagaggccccttggtctagcaaatttttatgcccca
ggacaggggaacgccagggccaagaagtgggag
gaattccacttcggatttgtagatctagctgatgatgctttgggttgttc
tttagcctctgcatccagtgtgctgtctacctcagaacttttctgctcct
ttcaaacaatcacactcaatccactctaccttaacactccccagctcact
gaagctcacaggcatgaggcttataaaataggcccatgaaccaggtgcca
ggatgcttgagaaaactggtgcaaagaaaggtaatgaaggtggatggagg
tgacatcctaaactgcaacaatgcccacaatgggatgttggagattccta
agacttgagttcagacaggtacctcttagtgttttttaactgttttcaaa
tgacagatgccacaaaatgtaaatattttttaaagctatcaaattaaagg
tgcttaaagactggtaatacaggacaataaattctgtttctaaccatcat
accccaaggactaagggaaaagcttagcatatcactgtagcaatcaggga
attgggccatctgttttaacagccaataaatctcagcagtttaaaataga
tagcgttgacttcctaggtgatcattgtctaattacatgtcccaagcaat
aagttgtactctaagggaagatggcccatatggaaaggaactgtagtcag
gaagtctaggaagaaagtacagggcacctagtctattggtaggcctatgg
tacatgtaagattcctcaatagagatatttctctcaatataaaccatgat
taggagccagccctggaagcatgtgggtcctgagttcatatccctccaaa
taagtgtacaaagacaatagtagcacactcctatactcccagttctgggg
atgcggagacaggaagattgtggaaatcacagtgagtccaaagcagaata
acaaagcttcagattcagggcagactatctagaagagtgtggagaacatt
tagaaacatgtgtacactgatgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631846
seq2: B6Ng01-026C06.b_456_731 (reverse)

seq1  CTCCCACTTCTTGGCCCTG------------------------------G  20
      |||||||||||||||||||                              |
seq2  CTCCCACTTCTTGGCCCTGGCGTTCCCCTGTCCTGGGGCATAAAAATTTG  50

seq1  CAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTCT  54
      | ||||| | ||||||||||| ||| |||                |||||
seq2  CTAGACCAAGGGGCCTCTCTTCCCAATGATGGCCGACCAGGCCATCTTCT  100

seq1  GATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCAT  104
      |  || || ||||||||| |||||||||| |||||| ||||| |||||||
seq2  GCCACTTATGCAGCTAGAAACACGAGCTCTGGGGGTTCTGGTTAGTTCAT  150

seq1  AATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTACT  154
      | ||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  ATTGTTGTTCCACCTATAGGGCTGCAGACCCCTTCAGCTCCTTGGGTACT  200

seq1  TTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGACT  204
      ||||||| |||||||||||||  ||||||| ||| ||||||||| |||||
seq2  TTCTCTAGCTCCTCCATTGGGATCCCTGTGTTCC-ATCCAATAGATGACT  249

seq1  GTGAGCATCCACTTCTGTGTTTGCTAG  231
      |||||||||||||||||| ||||||||
seq2  GTGAGCATCCACTTCTGTATTTGCTAG  276

seq1: chr15_67695937_67696922
seq2: B6Ng01-026C06.g_68_1047

seq1  GAATTCCACTTCGGATTTGTAGATCTAGCTGATGATGCTTTGGGTTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTCGGATTTGTAGATCTAGCTGATGATGCTTTGGGTTGTTC  50

seq1  TTTAGCCTCTGCATCCAGTGTGCTGTCTACCTCAGAACTTTTCTGCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTCTGCATCCAGTGTGCTGTCTACCTCAGAACTTTTCTGCTCCT  100

seq1  TTCAAACAATCACACTCAATCCACTCTACCTTAACACTCCCCAGCTCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACAATCACACTCAATCCACTCTACCTTAACACTCCCCAGCTCACT  150

seq1  GAAGCTCACAGGCATGAGGCTTATAAAATAGGCCCATGAACCAGGTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCACAGGCATGAGGCTTATAAAATAGGCCCATGAACCAGGTGCCA  200

seq1  GGATGCTTGAGAAAACTGGTGCAAAGAAAGGTAATGAAGGTGGATGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTGAGAAAACTGGTGCAAAGAAAGGTAATGAAGGTGGATGGAGG  250

seq1  TGACATCCTAAACTGCAACAATGCCCACAATGGGATGTTGGAGATTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTAAACTGCAACAATGCCCACAATGGGATGTTGGAGATTCCTA  300

seq1  AGACTTGAGTTCAGACAGGTACCTCTTAGTGTTTTTTAACTGTTTTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGAGTTCAGACAGGTACCTCTTAGTGTTTTTTAACTGTTTTCAAA  350

seq1  TGACAGATGCCACAAAATGTAAATATTTTTTAAAGCTATCAAATTAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATGCCACAAAATGTAAATATTTTTTAAAGCTATCAAATTAAAGG  400

seq1  TGCTTAAAGACTGGTAATACAGGACAATAAATTCTGTTTCTAACCATCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAAGACTGGTAATACAGGACAATAAATTCTGTTTCTAACCATCAT  450

seq1  ACCCCAAGGACTAAGGGAAAAGCTTAGCATATCACTGTAGCAATCAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGGACTAAGGGAAAAGCTTAGCATATCACTGTAGCAATCAGGGA  500

seq1  ATTGGGCCATCTGTTTTAACAGCCAATAAATCTCAGCAGTTTAAAATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCCATCTGTTTTAACAGCCAATAAATCTCAGCAGTTTAAAATAGA  550

seq1  TAGCGTTGACTTCCTAGGTGATCATTGTCTAATTACATGTCCCAAGCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGTTGACTTCCTAGGTGATCATTGTCTAATTACATGTCCCAAGCAAT  600

seq1  AAGTTGTACTCTAAGGGAAGATGGCCCATATGGAAAGGAACTGTAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTACTCTAAGGGAAGATGGCCCATATGGAAAGGAACTGTAGTCAG  650

seq1  GAAGTCTAGGAAGAAAGTACAGGGCACCTAGTCTATTGGTAGGCCTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTAGGAAGAAAGTACAGGGCACCTAGTCTATTGGTAGGCCTATGG  700

seq1  TACATGTAAGATTCCTCAATAGAGATATTTCTCTCAATATAAACCATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGTAAGATTCCTCAATAGAGATATTTCTCTCAATATAAACCATGAT  750

seq1  TAGGAGCCAGCCCTGGAAGCATGTGGGTCCTGAGTTCATATCCCTCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCCAGCCCTGGAAGCATGTGGGTCCTGAGTTCATATCCCTCCAAA  800

seq1  TAAGTGTACAAAGACAATAGTAGCACACTCCTATACTCCCAGTTCTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTACAAAGACAATAGTAGCACACTCCTATACTCCCAGTTCTGGGG  850

seq1  ATGCGGAGACAGGAAGATTTGTGGAAATCACAGGTGAGTCCAAAGCAGAA  900
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  ATGCGGAGACAGGAAGA-TTGTGGAAATCACA-GTGAGTCCAAAGCAGAA  898

seq1  TAACAAAGCTTCAGATTCAGGGGCAGACTATCTAGAAAGAGTGTGGAGAA  950
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  TAACAAAGCTTCAGATTCA-GGGCAGACTATCTAG-AAGAGTGTGGAGAA  946

seq1  CAATTTAGAAACATGTGTAACACTGATGTGTGTGTG  986
      | |||||||||||||||| |||||||||||||||||
seq2  C-ATTTAGAAACATGTGT-ACACTGATGTGTGTGTG  980