BAC Information

Click to search

BAC

Clone NameB6Ng01-026P14
Chromosome15 (Build37)
Map Location 52,942,333 - 53,040,782
singlet/doubletdoublet
Overlap geneExt1
Upstream geneLOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745
Downstream geneSamd12, EG665097, EG621631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-026P14.bB6Ng01-026P14.g
ACCDH857851DH857852
length5571,068
definitionDH857851|Mus musculus domesticus DNA, BAC clone: B6Ng01-026P14, 5' end.DH857852|Mus musculus domesticus DNA, BAC clone: B6Ng01-026P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,942,333 - 52,942,895)(53,039,707 - 53,040,782)
sequence
tttaactcggtctcctgtgatgctctcttgcttcactgaacctgagcata
tattcatgtgtccttaaaaaaaaaacacttctgatgatactgtcacattc
agacagacactatccaaaggcagttgctttatctgcccaagattgaacct
aattgataagatttaaaatctcaagcgggacagtgaaggcatatgccttt
aatcccagcagtgaggcagaggcaggctgatctccatgagttcaaagcca
gctggtctatagaactagttccaggacaaccaaaacgaaacagagaaacc
ctttcttgaagaaacaaacaaacaaacaaacaaacaaacaaacaaaaaag
gctgtaaaatctcttaaagtcatccccatcaccagagaaaactagaatca
tcactccagtgtgacatagccagaccctgtggaattctctccccaaacca
acactttattaatgaaaaaaaaaaaaaaacccaacagtttgatttaaact
ttcttgagtagtgccaaatgcataagacagagggatggtgtgtgtgtgtg
tgtgtgt
gaattccatatgctctgtcttcagactctgcttcaacaacagtaagcctg
ttagataacagagccttgaaatttggcctaaggtagagtctccttaattg
ttcctcactgtcctccttccagatcaaaaaccctaagaggtattgtccct
cctctggtcccttgatgctgatagagtcaccagaataggagtgtagcctg
gaccatctcaagcactgctgtgaaattcctcccctttatttgggaagcaa
aggcttccttgaaacccttccctgtaccaacattcacaaagcctgcccta
ggcttctcttagcagtctcaagtcaagtatctcattttattgcttcaata
tctttgttggctccgaatctgggttgttcttatctcttgcccaagatggc
tgccttaggcagttgactcaggaattacactgtaattaaagaaatgtagg
ggttcccctacctgcctcaccttgtttccccagctatgtgcgtggtgaag
agtcctttacacccagattcaggcggcgccaaggaattgattttctagga
atttgttgttcgtttacctgtgtttcatttcagttgagcacttgtgatag
cagttggagaatgagagtttggtgtagggactgaaagctgcaggagttgg
tcatgatcagacctttccctaagttgtgaagaaatgaagtggatgataga
aaatgcgtggggagcatgcatctcggtttcattcatttcacatgaaagga
gtacattttactcaatttgaacctaaacatttaacttactgagtgctaac
ttttatattagcttacaaccaaattgttgctttaaccctgaagctttgag
atggtctctcagagaagagagtatcagcttgtgttcccagggtggatagg
gacatgcttctggtctagattggcatagattctagactcctcctttgcta
tagatcctagactctaccactactttcatgcccgactcagtgcagtttca
tttatctgtaataggagaaccagccaggctatattataacctggctttgg
acctcacagacctgggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_52942333_52942895
seq2: B6Ng01-026P14.b_43_605

seq1  GAATTCTTTAACTCGGTCTCCTGTGATGCTCTCTTGCTTCACTGAACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAACTCGGTCTCCTGTGATGCTCTCTTGCTTCACTGAACCTG  50

seq1  AGCATATATTCATGTGTCCTTAAAAAAAAAACACTTCTGATGATACTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATATTCATGTGTCCTTAAAAAAAAAACACTTCTGATGATACTGTC  100

seq1  ACATTCAGACAGACACTATCCAAAGGCAGTTGCTTTATCTGCCCAAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGACAGACACTATCCAAAGGCAGTTGCTTTATCTGCCCAAGATT  150

seq1  GAACCTAATTGATAAGATTTAAAATCTCAAGCGGGACAGTGAAGGCATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTAATTGATAAGATTTAAAATCTCAAGCGGGACAGTGAAGGCATAT  200

seq1  GCCTTTAATCCCAGCAGTGAGGCAGAGGCAGGCTGATCTCCATGAGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCAGTGAGGCAGAGGCAGGCTGATCTCCATGAGTTCA  250

seq1  AAGCCAGCTGGTCTATAGAACTAGTTCCAGGACAACCAAAACGAAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGCTGGTCTATAGAACTAGTTCCAGGACAACCAAAACGAAACAGA  300

seq1  GAAACCCTTTCTTGAAGAAACAAACAAACAAACAAACAAACAAACAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCTTTCTTGAAGAAACAAACAAACAAACAAACAAACAAACAAACA  350

seq1  AAAAAGGCTGTAAAATCTCTTAAAGTCATCCCCATCACCAGAGAAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGCTGTAAAATCTCTTAAAGTCATCCCCATCACCAGAGAAAACTA  400

seq1  GAATCATCACTCCAGTGTGACATAGCCAGACCCTGTGGAATTCTCTCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCACTCCAGTGTGACATAGCCAGACCCTGTGGAATTCTCTCCCC  450

seq1  AAACCAACACTTTATTAATGAAAAAAAAAAAAAAACCCAACAGTTTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAACACTTTATTAATGAAAAAAAAAAAAAAACCCAACAGTTTGATT  500

seq1  TAAACTTTCTTGAGTAGTGCCAAATGCATAAGACAGAGGGATGGTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTCTTGAGTAGTGCCAAATGCATAAGACAGAGGGATGGTGTGTG  550

seq1  TGTGTGTGTGTGT  563
      |||||||||||||
seq2  TGTGTGTGTGTGT  563

seq1: chr15_53039707_53040782
seq2: B6Ng01-026P14.g_69_1136 (reverse)

seq1  GACCCA-GTCTGGTTGAGTTCCAAAGCCCAGGTTTATAATAATGACCTGC  49
      |||||| |||||  |||| ||||||| ||||| ||||||||  | |  ||
seq2  GACCCAGGTCTG--TGAGGTCCAAAG-CCAGG-TTATAATATAGCCTGGC  46

seq1  TGGTTCTTCCTAATACAGATAATGGAAACTGCACTGAGTCGGGCATGAAA  99
      |||||| ||||| |||||||||  ||||||||||||||||||||||||||
seq2  TGGTTC-TCCTATTACAGATAAATGAAACTGCACTGAGTCGGGCATGAAA  95

seq1  GGTAGTGGTAGAGTCTAGGAATCTATAGCAAAGGAGGAGTCTAGGAATCT  149
       |||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  -GTAGTGGTAGAGTCTAGG-ATCTATAGCAAAGGAGGAGTCTA-GAATCT  142

seq1  ATGGCAAATCTAGACCAGAAGCATGTCCCTATTCCACCCTGGGAACACAA  199
      || || ||||||||||||||||||||||||| ||||||||||||||||||
seq2  AT-GCCAATCTAGACCAGAAGCATGTCCCTA-TCCACCCTGGGAACACAA  190

seq1  GCTGATACTCTCTTTCTCTGGGAGACCATCTCAAAGCTTCAGGGTT-AAG  248
      |||||||||||| ||||||| ||||||||||||||||||||||||| |||
seq2  GCTGATACTCTC-TTCTCTGAGAGACCATCTCAAAGCTTCAGGGTTAAAG  239

seq1  C-ACAATTTGGTTGTAAGCTAATATAAAAGTTAGCACTCAGTAAGTTAAA  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAATTTGGTTGTAAGCTAATATAAAAGTTAGCACTCAGTAAGTTAAA  289

seq1  TGTTTAGGTTCAAATTGAGTAAAATGTACTCCTTTCATGTGAAATGAATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAGGTTCAAATTGAGTAAAATGTACTCCTTTCATGTGAAATGAATG  339

seq1  AAACCGAGATGCATGCTCCCCACGCATTTTCTATCATCCACTTCATTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGAGATGCATGCTCCCCACGCATTTTCTATCATCCACTTCATTTCT  389

seq1  TCACAACTTAGGGAAAGGTCTGATCATGACCAACTCCTGCAGCTTTCAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTTAGGGAAAGGTCTGATCATGACCAACTCCTGCAGCTTTCAGT  439

seq1  CCCTACACCAAACTCTCATTCTCCAACTGCTATCACAAGTGCTCAACTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACACCAAACTCTCATTCTCCAACTGCTATCACAAGTGCTCAACTGA  489

seq1  AATGAAACACAGGTAAACGAACAACAAATTCCTAGAAAATCAATTCCTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACACAGGTAAACGAACAACAAATTCCTAGAAAATCAATTCCTTG  539

seq1  GCGCCGCCTGAATCTGGGTGTAAAGGACTCTTCACCACGCACATAGCTGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCGCCTGAATCTGGGTGTAAAGGACTCTTCACCACGCACATAGCTGG  589

seq1  GGAAACAAGGTGAGGCAGGTAGGGGAACCCCTACATTTCTTTAATTACAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAGGTGAGGCAGGTAGGGGAACCCCTACATTTCTTTAATTACAG  639

seq1  TGTAATTCCTGAGTCAACTGCCTAAGGCAGCCATCTTGGGCAAGAGATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCCTGAGTCAACTGCCTAAGGCAGCCATCTTGGGCAAGAGATAA  689

seq1  GAACAACCCAGATTCGGAGCCAACAAAGATATTGAAGCAATAAAATGAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACCCAGATTCGGAGCCAACAAAGATATTGAAGCAATAAAATGAGA  739

seq1  TACTTGACTTGAGACTGCTAAGAGAAGCCTAGGGCAGGCTTTGTGAATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGACTTGAGACTGCTAAGAGAAGCCTAGGGCAGGCTTTGTGAATGT  789

seq1  TGGTACAGGGAAGGGTTTCAAGGAAGCCTTTGCTTCCCAAATAAAGGGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGGGAAGGGTTTCAAGGAAGCCTTTGCTTCCCAAATAAAGGGGA  839

seq1  GGAATTTCACAGCAGTGCTTGAGATGGTCCAGGCTACACTCCTATTCTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCACAGCAGTGCTTGAGATGGTCCAGGCTACACTCCTATTCTGG  889

seq1  TGACTCTATCAGCATCAAGGGACCAGAGGAGGGACAATACCTCTTAGGGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTATCAGCATCAAGGGACCAGAGGAGGGACAATACCTCTTAGGGT  939

seq1  TTTTGATCTGGAAGGAGGACAGTGAGGAACAATTAAGGAGACTCTACCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCTGGAAGGAGGACAGTGAGGAACAATTAAGGAGACTCTACCTT  989

seq1  AGGCCAAATTTCAAGGCTCTGTTATCTAACAGGCTTACTGTTGTTGAAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAAATTTCAAGGCTCTGTTATCTAACAGGCTTACTGTTGTTGAAGC  1039

seq1  AGAGTCTGAAGACAGAGCATATGGAATTC  1076
      |||||||||||||||||||||||||||||
seq2  AGAGTCTGAAGACAGAGCATATGGAATTC  1068