BAC Information

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BAC

Clone NameB6Ng01-027J14
Chromosome15 (Build37)
Map Location 12,967,890 - 13,086,059
singlet/doubletdoublet
Overlap geneCdh6
Upstream geneZfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik, Rnasen
Downstream geneLOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027J14.bB6Ng01-027J14.g
ACCDH858301DH858302
length926504
definitionDH858301|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J14, 5' end.DH858302|Mus musculus domesticus DNA, BAC clone: B6Ng01-027J14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,085,134 - 13,086,059)(12,967,890 - 12,968,399)
sequence
gaattctatagcagaattaggaaactatgtccatcaaagggttccaaaat
aggagctgtttgtgaaatctggagatggggatggggccatctttatcata
gtactttgtgtgacaaagcaagtcccagagggacgctataggaatagtaa
ctgccctgtagatgggtactctatattgtgagggatgactaagataatgt
cagaaagggagagccccatcatctctcaaggataagatggaaggctattg
agggaaacaggaaatgaaccctggcctgcatgtgcacacagatgtacaca
tgtgcacacatgtccacacatacacacgctagcaagcacgcacacatgca
tgcacacacacaatgactttcgcactgtgcctagcatctaagaaacgcac
ctgccccaaagttaactatttgctaccattattaccattagtgttttcca
attttccaatccaccaatcaacttggggcatttataaatcatctttcagg
cttttaaaaggattccattccctggagtgctccaccacattttttttaac
attacaactgaagtgttcgactgactaggggggcaagatgcccacaattc
tgctccctggagtgtgtttgggctgacacagccactcgccaaatgcagct
taaattcagaatttcctccgagcatcttctgccctgttccctggaaatcg
caaggctggtctttgtcatctggactcatggaggtgtgaaccaaccacag
ccaacatgaagtaagaacagcagctgcagattcgtttgtgaagagttgtt
atcttggcccgtggtagtactctggcctgtttcttaagcaagcaatcaca
tggtaatatcaaatgtgcatggcactcactgtgagtagaacacactcaca
ccacacacaccctccacacacacaca
ccaaaacactagacaaggtgtgggaggtactgaagccaattaagaataat
gaagagacagtgagtttattgcaggaaaaaaaagtgaaagggggagaaaa
atgagttattgagtagcaagagtgtagagaagagaagatggactgatgcc
tgtaggtctgtaagtcaacgtgccacagagatgcttgcacatctaggatt
atggctgctctacacacaatttccaggaaatggagccagcccagatgtct
aaatagatggataaagaaaacatgatacatatacacaatgggattttatg
cagccacaaaaaaaatgaaatcatgacattttcaggaaaaattgactgaa
cgagatcattacattacttgaaataagtcaagttcaggacaaatcctgta
ttttcttctacatgaaaaatctagattaacatcatatggatgcacatatt
catgcatatgtatttctctctctctctctctctctctctctctctctctc
tctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13085134_13086059
seq2: B6Ng01-027J14.b_44_969 (reverse)

seq1  TGTGTGTGTGTGGGGGGTGTGTGTGGTGTGTGTGTGTTCTACTCACAGTG  50
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  TGTGTGTGTGTGGAGGGTGTGTGTGGTGTGAGTGTGTTCTACTCACAGTG  50

seq1  AGTGCCATGCACATTTGATATTACCATGTGATTGCTTGCCTGAGAAACAG  100
      ||||||||||||||||||||||||||||||||||||||| | ||||||||
seq2  AGTGCCATGCACATTTGATATTACCATGTGATTGCTTGCTTAAGAAACAG  100

seq1  GCCAGAGTACTACCACGGGCCAAGATAACAAACTCTTCACAAACGAATCT  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCCAGAGTACTACCACGGGCCAAGATAAC-AACTCTTCACAAACGAATCT  149

seq1  GCAGCTGCTGTTCTTACTTCATGTTGGCTGTGGTTGGTTCACACCTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGCTGTTCTTACTTCATGTTGGCTGTGGTTGGTTCACACCTCCAT  199

seq1  GAGTCCAGATGAC-AAGACCAGCCTTGCGATTTCCAGGGAACAGGGCAGA  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGATGACAAAGACCAGCCTTGCGATTTCCAGGGAACAGGGCAGA  249

seq1  AGATGCTCGGAGGAAATTCTGAATTTAAGCTGCATTTGGCGAGTGGCTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCGGAGGAAATTCTGAATTTAAGCTGCATTTGGCGAGTGGCTGT  299

seq1  GTCAGCCCAAACACACTCCAGGGAGCAGAATTGTGGGCATCTTGCCCCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCCAAACACACTCCAGGGAGCAGAATTGTGGGCATCTTGCCCCCC  349

seq1  TAGTCAGTCGAACACTTCAGTTGTAATGTTAAAAAAAATGTGGTGGAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGTCGAACACTTCAGTTGTAATGTTAAAAAAAATGTGGTGGAGCA  399

seq1  CTCCAGGGAATGGAATCCTTTTAAAAGCCTGAAAGATGATTTATAAATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGAATGGAATCCTTTTAAAAGCCTGAAAGATGATTTATAAATGC  449

seq1  CCCAAGTTGATTGGTGGATTGGAAAATTGGAAAACACTAATGGTAATAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTTGATTGGTGGATTGGAAAATTGGAAAACACTAATGGTAATAAT  499

seq1  GGTAGCAAATAGTTAACTTTGGGGCAGGTGCGTTTCTTAGATGCTAGGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCAAATAGTTAACTTTGGGGCAGGTGCGTTTCTTAGATGCTAGGCA  549

seq1  CAGTGCGAAAGTCATTGTGTGTGTGCATGCATGTGTGCGTGCTTGCTAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCGAAAGTCATTGTGTGTGTGCATGCATGTGTGCGTGCTTGCTAGC  599

seq1  GTGTGTATGTGTGGACATGTGTGCACATGTGTACATCTGTGTGCACATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGTGGACATGTGTGCACATGTGTACATCTGTGTGCACATGC  649

seq1  AGGCCAGGGTTCATTTCCTGTTTCCCTCAATAGCCTTCCATCTTATCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGGTTCATTTCCTGTTTCCCTCAATAGCCTTCCATCTTATCCTT  699

seq1  GAGAGATGATGGGGCTCTCCCTTTCTGACATTATCTTAGTCATCCCTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGATGGGGCTCTCCCTTTCTGACATTATCTTAGTCATCCCTCAC  749

seq1  AATATAGAGTACCCATCTACAGGGCAGTTACTATTCCTATAGCGTCCCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAGTACCCATCTACAGGGCAGTTACTATTCCTATAGCGTCCCTC  799

seq1  TGGGACTTGCTTTGTCACACAAAGTACTATGATAAAGATGGCCCCATCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTGCTTTGTCACACAAAGTACTATGATAAAGATGGCCCCATCCC  849

seq1  CATCTCCAGATTTCACAAACAGCTCCTATTTTGGAACCCTTTGATGGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCAGATTTCACAAACAGCTCCTATTTTGGAACCCTTTGATGGACA  899

seq1  TAGTTTCCTAATTCTGCTATAGAATTC  926
      |||||||||||||||||||||||||||
seq2  TAGTTTCCTAATTCTGCTATAGAATTC  926

seq1: chr15_12967890_12968399
seq2: B6Ng01-027J14.g_67_576

seq1  GAATTCCCAAAACACTAGACAAGGTGTGGGAGGTACTGAAGCCAATTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAAACACTAGACAAGGTGTGGGAGGTACTGAAGCCAATTAAG  50

seq1  AATAATGAAGAGACAGTGAGTTTATTGCAGGAAAAAAAAGTGAAAGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGAAGAGACAGTGAGTTTATTGCAGGAAAAAAAAGTGAAAGGGGG  100

seq1  AGAAAAATGAGTTATTGAGTAGCAAGAGTGTAGAGAAGAGAAGATGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATGAGTTATTGAGTAGCAAGAGTGTAGAGAAGAGAAGATGGACT  150

seq1  GATGCCTGTAGGTCTGTAAGTCAACGTGCCACAGAGATGCTTGCACATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTGTAGGTCTGTAAGTCAACGTGCCACAGAGATGCTTGCACATCT  200

seq1  AGGATTATGGCTGCTCTACACACAATTTCCAGGAAATGGAGCCAGCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATGGCTGCTCTACACACAATTTCCAGGAAATGGAGCCAGCCCAG  250

seq1  ATGTCTAAATAGATGGATAAAGAAAACATGATACATATACACAATGGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAAATAGATGGATAAAGAAAACATGATACATATACACAATGGGAT  300

seq1  TTTATGCAGCCACAAAAAAAATGAAATCATGACATTTTCAGGAAAAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAGCCACAAAAAAAATGAAATCATGACATTTTCAGGAAAAATTG  350

seq1  ACTGAACGAGATCATTACATTACTTGAAATAAGTCAAGTTCAGGACAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACGAGATCATTACATTACTTGAAATAAGTCAAGTTCAGGACAAAT  400

seq1  CCTGTATTTTCTTCTACATGAAAAATCTAGATTAACATCATATGGATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATTTTCTTCTACATGAAAAATCTAGATTAACATCATATGGATGCA  450

seq1  CATATTCATGCATATGTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCATGCATATGTATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  500

seq1  TCTCTCTCTC  510
      ||||||||||
seq2  TCTCTCTCTC  510