BAC Information

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BAC

Clone NameB6Ng01-027K06
Chromosome15 (Build37)
Map Location 28,103,397 - 28,209,278
singlet/doubletdoublet
Overlap geneDnahc5
Upstream geneAnk, BC087945, LOC100040622, BC052328, Trio, LOC667126
Downstream geneEG382974, LOC100040675, LOC100040689, LOC100040702, LOC667153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027K06.bB6Ng01-027K06.g
ACCDH858331DH858332
length399738
definitionDH858331|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K06, 5' end.DH858332|Mus musculus domesticus DNA, BAC clone: B6Ng01-027K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,103,397 - 28,103,801)(28,208,545 - 28,209,278)
sequence
atggaggaactaacaattatgcataggttgcaccgtgttttataataaac
attccctattgagttctaggctctggggatggtggtgtcctgtgtggtca
aggattacttcagatgcagaaaagaagtagaacaggtacagtagcagcag
ggtgccaccgtggtgtcacagcataggtagtggtgatgctgaggagagag
gaaggagagagatgcagaactgtcaagaaatagcatgttcccaacattgg
gctgcctaggctagccccaacaagagaagatgcacctagtcttggggcaa
cttgatgtgccaagcttagttgatatctatgggagacacccctttttttg
cagagaaagagaagtagtagatgggggagcaggtgtggggggagaactg
gaattccatgtcgggatatatgtataaattttcctctgacaatttgtgga
tttgcctacccacatataagaaagtgggaatacatcatctactggccagg
aggtaattctgctatgggaacttggaaactctgagtgagatgactcagtg
ggaagagtgcctgcccctgctgttcaagcaggagtcctgagtttgcatcc
ccagtatctgcagaaagcctggtgcagcagacacctccataatcctagcc
ataggtgtgcaatatgaggaaaatccagtcagtcaacccatgccaaagtc
ggggggagggggcgggagacaggggaaagtgagcctctggttcagtgaga
aactctcaaaaataaggtgggaagccataaagtaagccatagcaacctct
gacctatacatgtgcacatacagacaagtgtgtccatacaaacacatggg
cggatacacacacacacacacgcacacacacagactgcacaccttatcct
cttttactcttggaaggagaactgagaaactgtcacctcggtctgaattg
tgggtttgaacaggacagattttttatttttaagtttagactcatttatg
ggaacaaacaaggagagagacttttactaaaacaggaggcaaaacaggga
gttcacagctctgtttcccattgcatttctaaatttaaagggtcttcagt
gaacacacttaaactgatacacagactatatgcctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28103397_28103801
seq2: B6Ng01-027K06.b_42_446

seq1  GAATTCATGGAGGAACTAACAATTATGCATAGGTTGCACCGTGTTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGAGGAACTAACAATTATGCATAGGTTGCACCGTGTTTTATA  50

seq1  ATAAACATTCCCTATTGAGTTCTAGGCTCTGGGGATGGTGGTGTCCTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTCCCTATTGAGTTCTAGGCTCTGGGGATGGTGGTGTCCTGTG  100

seq1  TGGTCAAGGATTACTTCAGATGCAGAAAAGAAGTAGAACAGGTACAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAAGGATTACTTCAGATGCAGAAAAGAAGTAGAACAGGTACAGTAG  150

seq1  CAGCAGGGTGCCACCGTGGTGTCACAGCATAGGTAGTGGTGATGCTGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGGTGCCACCGTGGTGTCACAGCATAGGTAGTGGTGATGCTGAGG  200

seq1  AGAGAGGAAGGAGAGAGATGCAGAACTGTCAAGAAATAGCATGTTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAAGGAGAGAGATGCAGAACTGTCAAGAAATAGCATGTTCCCAA  250

seq1  CATTGGGCTGCCTAGGCTAGCCCCAACAAGAGAAGATGCACCTAGTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGCTGCCTAGGCTAGCCCCAACAAGAGAAGATGCACCTAGTCTTG  300

seq1  GGGCAACTTGATGTGCCAAGCTTAGTTGATATCTATGGGAGACACCCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACTTGATGTGCCAAGCTTAGTTGATATCTATGGGAGACACCCCTT  350

seq1  TTTTTGCAGAGAAAGAGAAGTAGTAGATGGGGGAGCAGGTGTGGGGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCAGAGAAAGAGAAGTAGTAGATGGGGGAGCAGGTGTGGGGGGAG  400

seq1  AACTG  405
      |||||
seq2  AACTG  405

seq1: chr15_28208545_28209278
seq2: B6Ng01-027K06.g_68_805 (reverse)

seq1  GAGAGGCATCTTGTCTGTGT-TCAGTTAATGTGTGTTCACTGAAGACCCT  49
      ||||||||| | |||||||| |||||| | ||||||||||||||||||||
seq2  GAGAGGCATATAGTCTGTGTATCAGTTTAAGTGTGTTCACTGAAGACCCT  50

seq1  TT-AATTTAG-AATGCAATGGG-AACAGAGCTGTGAACTCCCTGCTTTGC  96
      || ||||||| ||||||||||| ||||||||||||||||||||| |||||
seq2  TTAAATTTAGAAATGCAATGGGAAACAGAGCTGTGAACTCCCTGTTTTGC  100

seq1  CTCCTGTTCTGGTTAACGTCTCTCTCCTTGTTTGTTCCCATAAATGAGTC  146
      |||||||| | || || |||||||||||||||||||||||||||||||||
seq2  CTCCTGTTTTAGTAAAAGTCTCTCTCCTTGTTTGTTCCCATAAATGAGTC  150

seq1  T-AACTTAAAAATAAAAAAATCTGTCCTGTTCAAACCCACAATTCAGACC  195
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAACTTAAAAAT-AAAAAATCTGTCCTGTTCAAACCCACAATTCAGACC  199

seq1  GAGGTGACAGTTTCTCAGTTCTCCTTCCAAGAGTAAAAGAGGATAAGGTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGACAGTTTCTCAGTTCTCCTTCCAAGAGTAAAAGAGGATAAGGTG  249

seq1  TGCAGTCTGTGTGTGTGCGTGTGTGTGTGTGTGTATCCGCCCATGTGTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCTGTGTGTGTGCGTGTGTGTGTGTGTGTATCCGCCCATGTGTTT  299

seq1  GTATGGACACACTTGTCTGTATGTGCACATGTATAGGTCAGAGGTTGCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGACACACTTGTCTGTATGTGCACATGTATAGGTCAGAGGTTGCTA  349

seq1  TGGCTTACTTTATGGCTTCCCACCTTATTTTTGAGAGTTTCTCACTGAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTACTTTATGGCTTCCCACCTTATTTTTGAGAGTTTCTCACTGAAC  399

seq1  CAGAGGCTCACTTTCCCCTGTCTCCCGCCCCCTCCCCCCGACTTTGGCAT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTCACTTTCCCCTGTCTCCCGCCCCCTCCCCCCGACTTTGGCAT  449

seq1  GGGTTGACTGACTGGATTTTCCTCATATTGCACACCTATGGCTAGGATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGACTGACTGGATTTTCCTCATATTGCACACCTATGGCTAGGATTA  499

seq1  TGGAGGTGTCTGCTGCACCAGGCTTTCTGCAGATACTGGGGATGCAAACT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTGTCTGCTGCACCAGGCTTTCTGCAGATACTGGGGATGCAAACT  549

seq1  CAGGACTCCTGCTTGAACAGCAGGGGCAGGCACTCTTCCCACTGAGTCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTCCTGCTTGAACAGCAGGGGCAGGCACTCTTCCCACTGAGTCAT  599

seq1  CTCACTCAGAGTTTCCAAGTTCCCATAGCAGAATTACCTCCTGGCCAGTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTCAGAGTTTCCAAGTTCCCATAGCAGAATTACCTCCTGGCCAGTA  649

seq1  GATGATGTATTCCCACTTTCTTATATGTGGGTAGGCAAATCCACAAATTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTATTCCCACTTTCTTATATGTGGGTAGGCAAATCCACAAATTG  699

seq1  TCAGAGGAAAATTTATACATATATCCCGACATGGAATTC  734
      |||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAAAATTTATACATATATCCCGACATGGAATTC  738