BAC Information

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BAC

Clone NameB6Ng01-027O07
Chromosome15 (Build37)
Map Location 89,074,634 - 89,209,657
singlet/doubletdoublet
Overlap geneSaps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik
Downstream geneKlhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-027O07.bB6Ng01-027O07.g
ACCDH858514DH858515
length980943
definitionDH858514|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O07, 5' end.DH858515|Mus musculus domesticus DNA, BAC clone: B6Ng01-027O07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,208,674 - 89,209,657)(89,074,634 - 89,075,582)
sequence
gaattccttccacaggtgctgcaagccataagcgcccccaccagcgctat
gggctcagaagtctgggtcggcacttggcggccacatcggccccgcggcc
ccatcgcggcgctctacagaggcccggggccaaaatacaagctgccaacg
aacaccggtagcaagggcggatgcaggggaggaaactgggaaggtgggac
tgtgggcggtctacactggtgccaggaggccaaggaactggagaactgtg
cccgaagcaaaaagggagggcagaagattagaggttctgtgcgggagctg
cgttggtgaaatgggagagggaacagagctggcagcctctgggtcttgcg
ggaggtgacgcgggaatgcgcccccaggttacaaactgcacgacccgtct
cggccgcgagcccccgccttctccttcggctcgcgtccacccttgcggca
tgcaacctgcggacccgggccgagttacctggtgcctgctcgcatgactg
tgcgcggcacagttggctccccggccttctccatctacggtcgcctaagc
cacacggcgcctgtcctcactccgggaccgggtcagcaccctggggcccg
ggtctccccaacgtggaactgcctccaagaacgcccaccaggaaattccc
cgggaacctcctacccatacccaaaaacccgatcctcactgtggctccca
tttctccctagtgccaagaccccaggctaggcttcccgtaacttacccca
ccccagttctggcccacactcttggtccatcccataggcaggtactaccc
agaacgcgcgagaaatgtgacgtaccccagcgctcctcggcataccatcg
ctccccgaaactggggcatcctcgcaaagcaagaaaccccaggtgaggcc
tcatgggctggatccagcactagggactttctatatcccaccctcatctg
ccgtaatggaagtagattggaccattggac
gaattccactgtaaaaattgagaagatggagcattataaattttaaactt
ttcaaaaacttgtaagactgaagtccatatagatttaagaagtgtgctgc
atccgctgggcggcggtggtggtgttcacagctcgtgaggaggagagcgg
tgcacaaatccctgtgaagagagagctgccttcctcccccttgggcagtc
cggaacccagggacgagctgcccagtcggtcttcccactgacctgaagac
gctcactccctcacagtgtgctgggccttgtctcctaggggattctagat
cctcttagttaacagtattaatcaccacaccgtcctctcacttctaagtt
ttaaaaaagttttatttattttctgtatgtgagtgttttacctgtatata
tgtctgtactattcgtattcctggtgccttcagatgtcagaaaaagacaa
ggatagaagataccccagagctagagttacagactgttgtgagccaccat
gtgggtgctaggactcaaacccaggtcctctgcaagaacaattagtgctc
tcttaacccctgcgccctctcctcagcttctgtctctagaactgtgtcct
tgttgcttgttctttgaggtagggtctttctaagcagctctggctcttct
gggacttgctatatagaccaggtgaaccttgaactctcagagagccacct
gcctctgccttccaaatgctgtgattaaagttatgtcgctttctaaaatt
ttatcatctaaaatgttatactggagctaggcatggtagtgtactcttaa
cctttcaagaggctgaagtgggagaattgtttgagcccaagaggtttaag
atcagtctgggcacatagtgagactatatttcaaacaaataaacagcaaa
gaaacccaccaagttgttaatggatcatagagtgcatcttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89208674_89209657
seq2: B6Ng01-027O07.b_45_1024 (reverse)

seq1  GTCCAATGGTCCAATCTCCTTGCCTTTACGGCAGACTGCGGGTTGGGGTA  50
      ||||||||||||||||| ||| || |||||||||| || ||| |||| ||
seq2  GTCCAATGGTCCAATCTACTT-CCATTACGGCAGA-TGAGGG-TGGGATA  47

seq1  TAGGAAGGTCCCTAGTGCTGGATCCAGCCCTTGAGGCCTCACCTGGGGTT  100
      || ||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  TA-GAAAGTCCCTAGTGCTGGATCCAGCCCATGAGGCCTCACCTGGGGTT  96

seq1  TCTTGCTTTGCGAGGATGCCCCAGTTTCGGGGAGCGATGGTATGCCGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTGCGAGGATGCCCCAGTTTCGGGGAGCGATGGTATGCCGAGG  146

seq1  AGCGCTGGGGTACGTCACATTTCTCGCGCGTTCTGGGTAGTACCTGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCTGGGGTACGTCACATTTCTCGCGCGTTCTGGGTAGTACCTGCCTA  196

seq1  TGGGATGGACCAAGAGTGTGGGCCAGAACTGGGGTGGGGTAAGTTACGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGACCAAGAGTGTGGGCCAGAACTGGGGTGGGGTAAGTTACGGG  246

seq1  AAGCCTAGCCTGGGGTCTTGGCACTAGGGAGAAATGGGAGCCACAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGCCTGGGGTCTTGGCACTAGGGAGAAATGGGAGCCACAGTGAG  296

seq1  GATCGGGTTTTTGGGTATGGGTAGGAGGTTCCCGGGGAATTTCCTGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGGGTTTTTGGGTATGGGTAGGAGGTTCCCGGGGAATTTCCTGGTGG  346

seq1  GCGTTCTTGGAGGCAGTTCCACGTTGGGGAGACCCGGGCCCCAGGGTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTCTTGGAGGCAGTTCCACGTTGGGGAGACCCGGGCCCCAGGGTGCT  396

seq1  GACCCGGTCCCGGAGTGAGGACAGGCGCCGTGTGGCTTAGGCGACCGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGGTCCCGGAGTGAGGACAGGCGCCGTGTGGCTTAGGCGACCGTAG  446

seq1  ATGGAGAAGGCCGGGGAGCCAACTGTGCCGCGCACAGTCATGCGAGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAGGCCGGGGAGCCAACTGTGCCGCGCACAGTCATGCGAGCAGG  496

seq1  CACCAGGTAACTCGGCCCGGGTCCGCAGGTTGCATGCCGCAAGGGTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGTAACTCGGCCCGGGTCCGCAGGTTGCATGCCGCAAGGGTGGAC  546

seq1  GCGAGCCGAAGGAGAAGGCGGGGGCTCGCGGCCGAGACGGGTCGTGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCCGAAGGAGAAGGCGGGGGCTCGCGGCCGAGACGGGTCGTGCAGT  596

seq1  TTGTAACCTGGGGGCGCATTCCCGCGTCACCTCCCGCAAGACCCAGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACCTGGGGGCGCATTCCCGCGTCACCTCCCGCAAGACCCAGAGGC  646

seq1  TGCCAGCTCTGTTCCCTCTCCCATTTCACCAACGCAGCTCCCGCACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTCTGTTCCCTCTCCCATTTCACCAACGCAGCTCCCGCACAGAA  696

seq1  CCTCTAATCTTCTGCCCTCCCTTTTTGCTTCGGGCACAGTTCTCCAGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAATCTTCTGCCCTCCCTTTTTGCTTCGGGCACAGTTCTCCAGTTC  746

seq1  CTTGGCCTCCTGGCACCAGTGTAGACCGCCCACAGTCCCACCTTCCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCCTCCTGGCACCAGTGTAGACCGCCCACAGTCCCACCTTCCCAGT  796

seq1  TTCCTCCCCTGCATCCGCCCTTGCTACCGGTGTTCGTTGGCAGCTTGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCCTGCATCCGCCCTTGCTACCGGTGTTCGTTGGCAGCTTGTAT  846

seq1  TTTGGCCCCGGGCCTCTGTAGAGCGCCGCGATGGGGCCGCGGGGCCGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCCGGGCCTCTGTAGAGCGCCGCGATGGGGCCGCGGGGCCGATG  896

seq1  TGGCCGCCAAGTGCCGACCCAGACTTCTGAGCCCATAGCGCTGGTGGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGCCAAGTGCCGACCCAGACTTCTGAGCCCATAGCGCTGGTGGGGG  946

seq1  CGCTTATGGCTTGCAGCACCTGTGGAAGGAATTC  984
      ||||||||||||||||||||||||||||||||||
seq2  CGCTTATGGCTTGCAGCACCTGTGGAAGGAATTC  980

seq1: chr15_89074634_89075582
seq2: B6Ng01-027O07.g_70_1012

seq1  GAATTCCACTGTAAAAATTGAGAAGATGGAGCATTATAAATTTTAAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTAAAAATTGAGAAGATGGAGCATTATAAATTTTAAACTT  50

seq1  TTCAAAAACTTGTAAGACTGAAGTCCATATAGATTTAAGAAGTGTGCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAACTTGTAAGACTGAAGTCCATATAGATTTAAGAAGTGTGCTGC  100

seq1  ATCCGCTGGGCGGCGGTGGTGGTGTTCACAGCTCGTGAGGAGGAGAGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCTGGGCGGCGGTGGTGGTGTTCACAGCTCGTGAGGAGGAGAGCGG  150

seq1  TGCACAAATCCCTGTGAAGAGAGAGCTGCCTTCCTCCCCCTTGGGCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAAATCCCTGTGAAGAGAGAGCTGCCTTCCTCCCCCTTGGGCAGTC  200

seq1  CGGAACCCAGGGACGAGCTGCCCAGTCGGTCTTCCCACTGACCTGAAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAACCCAGGGACGAGCTGCCCAGTCGGTCTTCCCACTGACCTGAAGAC  250

seq1  GCTCACTCCCTCACAGTGTGCTGGGCCTTGTCTCCTAGGGGATTCTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTCCCTCACAGTGTGCTGGGCCTTGTCTCCTAGGGGATTCTAGAT  300

seq1  CCTCTTAGTTAACAGTATTAATCACCACACCGTCCTCTCACTTCTAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTAGTTAACAGTATTAATCACCACACCGTCCTCTCACTTCTAAGTT  350

seq1  TTAAAAAAGTTTTATTTATTTTCTGTATGTGAGTGTTTTACCTGTATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAGTTTTATTTATTTTCTGTATGTGAGTGTTTTACCTGTATATA  400

seq1  TGTCTGTACTATTCGTATTCCTGGTGCCTTCAGATGTCAGAAAAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTACTATTCGTATTCCTGGTGCCTTCAGATGTCAGAAAAAGACAA  450

seq1  GGATAGAAGATACCCCAGAGCTAGAGTTACAGACTGTTGTGAGCCACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGAAGATACCCCAGAGCTAGAGTTACAGACTGTTGTGAGCCACCAT  500

seq1  GTGGGTGCTAGGACTCAAACCCAGGTCCTCTGCAAGAACAATTAGTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGCTAGGACTCAAACCCAGGTCCTCTGCAAGAACAATTAGTGCTC  550

seq1  TCTTAACCCCTGCGCCCTCTCCTCAGCTTCTGTCTCTAGAACTGTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCCCTGCGCCCTCTCCTCAGCTTCTGTCTCTAGAACTGTGTCCT  600

seq1  TGTTGCTTGTTCTTTGAGGTAGGGTCTTTCTAAGCAGCTCTGGCTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTGTTCTTTGAGGTAGGGTCTTTCTAAGCAGCTCTGGCTCTTCT  650

seq1  GGAACTTGCTATATAGACCAGGTGAACCTTGAACTCTCAGAGAGCCACCT  700
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTGCTATATAGACCAGGTGAACCTTGAACTCTCAGAGAGCCACCT  700

seq1  GCCTCTGCCTTCCAAATGCTGTGATTAAAGTTATGTCGC-TTCTAAAATT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCCTCTGCCTTCCAAATGCTGTGATTAAAGTTATGTCGCTTTCTAAAATT  750

seq1  TTATCATCTAAAATGTTATACTGGAGCTAGGCATGGTAGTGTACTCTTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCTAAAATGTTATACTGGAGCTAGGCATGGTAGTGTACTCTTAA  800

seq1  CCTTTCAAGAGGCTGAAGTGGGAGAATTGTTTGAGCCCAAGAGGTTTAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCAAGAGGCTGAAGTGGGAGAATTGTTTGAGCCCAAGAGGTTTAAG  850

seq1  ATCAGTCTGGGCACCATAGTGAGACTATATTTCAAACAAATAAAACAAGC  899
      ||||||||||||| ||||||||||||||||||||||||||||||   |||
seq2  ATCAGTCTGGGCA-CATAGTGAGACTATATTTCAAACAAATAAA--CAGC  897

seq1  AAAGCAAAACCCACCAAGTTGTTAATTGGATCATAGAGTGCAATCTTTTG  949
      ||||  ||||||||||||||||||| ||||||||||||||| ||||||||
seq2  AAAG--AAACCCACCAAGTTGTTAA-TGGATCATAGAGTGC-ATCTTTTG  943