BAC Information

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BAC

Clone NameB6Ng01-028D05
Chromosome15 (Build37)4 (Build37)
Map Location 56,393,176 - 56,394,3928,331,271 - 8,331,817
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984, BC026439
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028D05.bB6Ng01-028D05.g
ACCDH858742DH858743
length1,198903
definitionDH858742|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D05, 5' end.DH858743|Mus musculus domesticus DNA, BAC clone: B6Ng01-028D05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,393,176 - 56,394,392)(8,331,271 - 8,331,817)
sequence
gaattcaaagacatccagaagacactgtgtatttgaatgtgggtcacttt
ttcaacattttggtgtgttcaataaaggtgccagaaaagctctctcagct
actcgtaattttcttcttttctttaaagttttccttaatatttgttttaa
aagtatagtaaaggtagacaatagttgtgggaacaaaggagtgagaccta
agttaagggactgaattgctcaagatttagtcaattctctccataatgct
gtcactccatccatgcttaataacttcatccacacagactagaaacataa
atactagtttcattggttgatattgacaagtgcctggccctatctgtatg
atgaaacaacacacagaaatagagaaagtggatcatagaaattaagctat
ttttcccagtggctactaagtgcagcattcaacattgaaaccatgtcctc
tggcttcagaagccaggcttggaagctctgtggatcactgccagtttctg
gattaaaaattgcatctccacagatgattatgttcccagtgcaactagat
acaaataggaacatactgctattgcttgcaagtctgaaaatggcttttaa
gaactgcatactccttgtcatcccaacacttgtgaggcttgtcatcttag
caaaataacaatactttcccgagccttcagtgcttttgctgcggagttgg
gggtggtataggccttaggatgacatagttggctcctactcttccttgga
tcctagaattcttgaggcatgtatcatttgccacatatgtatgtgtagcc
tgatgacttttcacagacatcttttagttacctcgtgaagaacacaactg
gagcatagcaatgcagcaggagactagcccacatgagattgtttttgttt
cagtcttttcagcataatttaacacacaacaactataaataaacaataaa
aaatagaaaattagcatggaaagctattacaacaactgtcaagtgaatta
gtaccactgatgtaattttttaaaggctctgtagtacaaggttaccatag
aggtatattccatcaaacactctcttagctactgctgacaaaggtgtatg
tctggaatatacatggagggtctggtggaatccaagaacaggctgaaaga
atatggctgatggagaatacaatgactctcaaccgtcaattcaaatat
gaattcctgatctttccaagacttttatcttgaatgggtgttggatcttg
gcaaatgctttctcagcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattatgttgatggattttcgtatataaacca
tccctgcatccctggaataaaacctacatggtcaggatgaatgattgttt
tgacgtgtttttggattcggttagcgagaattttattgagtatttttcca
tcggtattcataagggaaattggtctgaagttctctatcgttttttgatc
tttctgtggtttagatatcagagtaattgtgacttcatagaatgaattgg
gtagagtaccttctgcttctattttgtggaatagtttgtgaggaacagga
attagatcttctttgaaggtctaatagaactctgcactaaccccatctgg
tcctgggctttttttggctgggagactattaatgactgcttctatttctt
taggggatataggactgtttagatcattaacctgatattgatttaatttt
ggtaccttgtatctgtctagaaatttgtccatttcgtccaggttttccag
ttttgttgagtatagccttttgtagaaggatctgacggtgttttggattt
cttcaagatctgttgttatgtctcccttttcatttctgattttgttaatt
aggatgctgtccctgtgcccttaatgagtctggctaagggttcatctatc
ttgttgattttctcaaagaaccagctcctcgtttggttgattctttgaat
agttcttcttatttccacttggttgatttcacccctcagtttgattattt
cctgccttctactcctcttgggtgatttgcttcctttttctagagctttt
agg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_56393176_56394392
seq2: B6Ng01-028D05.b_45_1242 (reverse)

seq1  ATATTTGAATCTAAACGGCTTGAGGAAGTCAATTGTAAATACTCCATCAG  50
      |||||||||  |  |||| |||||  |||| |||||  || |||||||||
seq2  ATATTTGAA--TTGACGG-TTGAG--AGTC-ATTGT--ATTCTCCATCAG  42

seq1  ACAATAATCTTTCTCAG-CAGTTCTTTGGATTCCAACCAAGACCCTCCAA  99
       | ||| ||||  |||| | |||| ||||||||||  | ||||||||| |
seq2  -CCATATTCTT--TCAGCCTGTTC-TTGGATTCCA--CCAGACCCTCC-A  85

seq1  TGTGATAAATCCAGACATACAGCCTCTGTCAGCAGTAGCTAAGAGAGTGT  149
      ||| || | |||||||||||| ||| ||||||||||||||||||||||| 
seq2  TGT-AT-ATTCCAGACATACA-CCTTTGTCAGCAGTAGCTAAGAGAGTG-  131

seq1  TTTGATGGATATTACCTCTATGGTAACCTTGTACTTACAGAGCCTTTAAA  199
      |||||||||   |||||||||||||||||||||| |||||||||||||||
seq2  TTTGATGGAATATACCTCTATGGTAACCTTGTAC-TACAGAGCCTTTAAA  180

seq1  AAATTACATCAGTGGTACTAATTCACTTGACAGTTGTTGTAATAGCTTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACATCAGTGGTACTAATTCACTTGACAGTTGTTGTAATAGCTTTC  230

seq1  CATGCTAATTTTCTATTTTTTATTGTTTATTTATAGTTGTTGTGTGTTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAATTTTCTATTTTTTATTGTTTATTTATAGTTGTTGTGTGTTAA  280

seq1  ATTATGCTGAAAAGACTGAAACAAAAACAATCTCATGTGGGCTAGTCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCTGAAAAGACTGAAACAAAAACAATCTCATGTGGGCTAGTCTCC  330

seq1  TGCTGCATTGCTATGCTCCAGTTGTGTTCTTCACGAGGTAACTAAAAGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCATTGCTATGCTCCAGTTGTGTTCTTCACGAGGTAACTAAAAGAT  380

seq1  GTCTGTGAAAAGTCATCAGGCTACACATACATATGTGGCAAATGATACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGAAAAGTCATCAGGCTACACATACATATGTGGCAAATGATACAT  430

seq1  GCCTCAAGAATTCTAGGATCCAAGGAAGAGTAGGAGCCAACTATGTCATC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAGAATTCTAGGATCCAAGGAAGAGTAGGAGCCAACTATGTCATC  480

seq1  CTAAGGCCTATACCACCCCCAACTCCGCAGCAAAAGCACTGAAGGCTCGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCTATACCACCCCCAACTCCGCAGCAAAAGCACTGAAGGCTCGG  530

seq1  GAAAGTATTGTTATTTTGCTAAGATGACAAGCCTCACAAGTGTTGGGATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTGTTATTTTGCTAAGATGACAAGCCTCACAAGTGTTGGGATG  580

seq1  ACAAGGAGTATGCAGTTCTTAAAAGCCATTTTCAGACTTGCAAGCAATAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAGTATGCAGTTCTTAAAAGCCATTTTCAGACTTGCAAGCAATAG  630

seq1  CAGTATGTTCCTATTTGTATCTAGTTGCACTGGGAACATAATCATCTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTTCCTATTTGTATCTAGTTGCACTGGGAACATAATCATCTGTG  680

seq1  GAGATGCAATTTTTAATCCAGAAACTGGCAGTGATCCACAGAGCTTCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAATTTTTAATCCAGAAACTGGCAGTGATCCACAGAGCTTCCAA  730

seq1  GCCTGGCTTCTGAAGCCAGAGGACATGGTTTCAATGTTGAATGCTGCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGCTTCTGAAGCCAGAGGACATGGTTTCAATGTTGAATGCTGCACT  780

seq1  TAGTAGCCACTGGGAAAAATAGCTTAATTTCTATGATCCACTTTCTCTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCCACTGGGAAAAATAGCTTAATTTCTATGATCCACTTTCTCTAT  830

seq1  TTCTGTGTGTTGTTTCATCATACAGATAGGGCCAGGCACTTGTCAATATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTGTTGTTTCATCATACAGATAGGGCCAGGCACTTGTCAATATC  880

seq1  AACCAATGAAACTAGTATTTATGTTTCTAGTCTGTGTGGATGAAGTTATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGAAACTAGTATTTATGTTTCTAGTCTGTGTGGATGAAGTTATT  930

seq1  AAGCATGGATGGAGTGACAGCATTATGGAGAGAATTGACTAAATCTTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGATGGAGTGACAGCATTATGGAGAGAATTGACTAAATCTTGAG  980

seq1  CAATTCAGTCCCTTAACTTAGGTCTCACTCCTTTGTTCCCACAACTATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGTCCCTTAACTTAGGTCTCACTCCTTTGTTCCCACAACTATTG  1030

seq1  TCTACCTTTACTATACTTTTAAAACAAATATTAAGGAAAACTTTAAAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTTACTATACTTTTAAAACAAATATTAAGGAAAACTTTAAAGAA  1080

seq1  AAGAAGAAAATTACGAGTAGCTGAGAGAGCTTTTCTGGCACCTTTATTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAATTACGAGTAGCTGAGAGAGCTTTTCTGGCACCTTTATTGA  1130

seq1  ACACACCAAAATGTTGAAAAAGTGACCCACATTCAAATACACAGTGTCTT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCAAAATGTTGAAAAAGTGACCCACATTCAAATACACAGTGTCTT  1180

seq1  CTGGATGTCTTTGAATTC  1217
      ||||||||||||||||||
seq2  CTGGATGTCTTTGAATTC  1198

seq1: chr4_8331271_8331817
seq2: B6Ng01-028D05.g_66_611 (reverse)

seq1  TTAAATCAGGATCAAGTTAATGATCTAAACAGTCCCATATCCCCTAAAGA  50
      ||||||||  |||| |||||||||||||||||||| ||||||||||||||
seq2  TTAAATCAATATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGA  50

seq1  AATAGAAGCAGTCATTAATAGTCTCCCAGCCAAAAAAAAGCCCAGGACCA  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AATAGAAGCAGTCATTAATAGTCTCCCAGCC-AAAAAAAGCCCAGGACCA  99

seq1  GATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCC  150
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  GATGGGGTTAGTGCAGAGTTCTATTAGACCTTCAAAGAAGATCTAATTCC  149

seq1  AGTTCTGCACAAACTATTCCACAAAATAGAAGAAGAAGGTACTCTACCCA  200
       ||||  ||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTTCCTCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTCTACCCA  199

seq1  ACTCATTCTATGAAGCTACAATTACTCTGATACCTAAACCACAGAAAGAT  250
      | |||||||||||||  ||||||||||||||| |||||||||||||||||
seq2  ATTCATTCTATGAAGTCACAATTACTCTGATATCTAAACCACAGAAAGAT  249

seq1  CCAACAAAGATAGAGATCTTCAGACCAATTTCCCTTATGAATATCGATGC  300
      | || || |||||||| |||||||||||||||||||||||||| ||||| 
seq2  CAAAAAACGATAGAGAACTTCAGACCAATTTCCCTTATGAATACCGATGG  299

seq1  AAAAATACTCAATAAAATTCTCGCTAACCGAACCCAAGAAAACATTAAAG  350
      |||||||||||||||||||||||||||||||| |||| || || | ||| 
seq2  AAAAATACTCAATAAAATTCTCGCTAACCGAATCCAAAAACACGTCAAAA  349

seq1  CAATCATCCATCATGACCAAGTAGGTTTTATTCCAGGGATTCAGGGATGG  400
      ||||||| |||| |||||| |||||||||||||||||||| |||||||||
seq2  CAATCATTCATCCTGACCATGTAGGTTTTATTCCAGGGATGCAGGGATGG  399

seq1  TTTAATGTACGGAAATCCATCACCATAATCCATTATATAAACAAA-ACAA  449
      ||| || |||| |||||||||| ||||||||||||||||||||||  |||
seq2  TTT-ATATACGAAAATCCATCAACATAATCCATTATATAAACAAACTCAA  448

seq1  AGACAAAAACCACATGATCATCTCGTTAGATGGGGAGAAAGCATTTGACA  499
      ||||||||||||||||||||||||||||||||  ||||||||||||| ||
seq2  AGACAAAAACCACATGATCATCTCGTTAGATGCTGAGAAAGCATTTGCCA  498

seq1  AGATCCAACACCCATTCATGATAAAGGTCTTGGAAAGATCAGGAATTC  547
      |||||||||||||||||| |||||| ||||||||||||||||||||||
seq2  AGATCCAACACCCATTCAAGATAAAAGTCTTGGAAAGATCAGGAATTC  546