BAC Information

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BAC

Clone NameB6Ng01-028N14
Chromosome15 (Build37)
Map Location 23,656,946 - 23,693,084
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh18, LOC624863
Downstream geneLOC666989, LOC666999, LOC100040492, LOC100040499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-028N14.bB6Ng01-028N14.g
ACCDH859218DH859219
length1,217991
definitionDH859218|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N14, 5' end.DH859219|Mus musculus domesticus DNA, BAC clone: B6Ng01-028N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,656,946 - 23,658,180)(23,692,436 - 23,693,084)
sequence
gaattctttaaggtttttaaaaaattaatttccaagacagtgaagtcttg
ataagttagttcaaggatgtgctaatgaagaaaactttattgccctttgt
ctcaataaacgacctacattcatttttatatacccaaagagtgaaaataa
aaagataaacatttagtatgttattctgttctgttcaaaaaggaactctc
attaactatattttagtgtattttatgtccattattataaaaactatata
catgacctgttcaattgattttttttaatattgtttataaaattaacata
tttttgccagcaagtgttgctgtccatgctgccaatctgatttcaggcta
tggatcatacaaggcaggaatgaaagaacctattctggcaagttgtactt
tgacttttacattcatgctatgagatacttgctgtgataatagcatgcag
gcccgtgaaacacacaaacagaaataatgcgataataacataatacaatg
cttttataggtaaaatatttgattgtaaattaattacttctgaacaatat
ataatttagtaatttctaaaatagacaattgacaacattgaatattttga
aaaacttctgtgaaaatagaaatagccaaatttacttagaatattttgcc
aaatattcctgaaatgaactactaaattgtaaatattccaggaatgttat
gttaagtttaaaactatgaaaaatttccacatttgagtaataaaatatta
aataacaacaataaaataatgtaattatggtcaaatataaagccaagata
ccaagattgtattgccttgacattaaattttaatttctagtaattagaaa
tggcatatttgtgatgagaaacaatattctgcagcaactttgaattaata
tatcttttgatttacaccctaccacgaaatatgtaggcaaatttagtatt
ttgataaattctaacacttgattttatgcaagaatatatttacacatatg
taatgtatatttatatgtgacatataaatatatattctacattatataat
aacaatttacatacatatgacattacatatatatttttatatgtaagtgc
ataggtatatttagtgatcactttccctgattattctccttaaattacaa
tacttttagtctatggcattctggagctttaattacttcgtttcctataa
catagttacatttttac
gaattcagaaataaaacctcatataaaagcaattttctttttaattgatt
ttttcattaacttattctggattcgtaatactactcaagtgacaaatgga
aagtgaaatgcaaaacagtcttaaatttggttttaaaaatggatgtcata
tatacacatatacatacacacacacacacacacacacacacactcacagg
attcagaaaaatatatgtgcacatttaagccataggttatgtccactgat
atttttataattactctaccatttttttatactcaaataattttattttc
cttctgactcacatcatagttactcagagttctaatttaggttgttatat
aatgtccatcttgttttgagtaccatgtttctgacccagaactgttcctg
tctgaaagaaatgtaaaaacaaaaatggagcagagactgaagaaatggca
ggccagtgaccttcccaacttgggatccatgggagaacagcaaaccctga
cactattactgatgctatgttgtgcttgcaggcagaaatttaacattgct
gtcctctgagaggctctaccagcagctgactgagacagatatagatatat
acagccagccattggactaaggtcagggactcctagggaagagataaggg
aaagagtgaaagaactgaatgggagggctaccccataggaggaccaacag
tgtccccgatactaagctaccaataaaaaaagtatatacggtctggtctg
aggaccctggcacatattcagcagaggagtattcaacctttttcttggcc
cagtgggagaatttgtgcctagtcctgtagagaattgatgccctagggaa
ggaggatgccttgggtggtcagcctctctgaggtaaaggagggctggaat
gtgataggaaactctgggagagggagcgggggaagggaacatttgttatg
taataataaatatattaaagagataaagagatacataaacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_23656946_23658180
seq2: B6Ng01-028N14.b_45_1261

seq1  GAATTCTTTAAGGTTTTTAAAAAATTAATTTCCAAGACAGTGAAGTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAGGTTTTTAAAAAATTAATTTCCAAGACAGTGAAGTCTTG  50

seq1  ATAAGTTAGTTCAAGGATGTGCTAATGAAGAAAACTTTATTGCCCTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAGTTCAAGGATGTGCTAATGAAGAAAACTTTATTGCCCTTTGT  100

seq1  CTCAATAAACGACCTACATTCATTTTTATATACCCAAAGAGTGAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATAAACGACCTACATTCATTTTTATATACCCAAAGAGTGAAAATAA  150

seq1  AAAGATAAACATTTAGTATGTTATTCTGTTCTGTTCAAAAAGGAACTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAAACATTTAGTATGTTATTCTGTTCTGTTCAAAAAGGAACTCTC  200

seq1  ATTAACTATATTTTAGTGTATTTTATGTCCATTATTATAAAAACTATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTATATTTTAGTGTATTTTATGTCCATTATTATAAAAACTATATA  250

seq1  CATGACCTGTTCAATTGATTTTTTTTAATATTGTTTATAAAATTAACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTGTTCAATTGATTTTTTTTAATATTGTTTATAAAATTAACATA  300

seq1  TTTTTGCCAGCAAGTGTTGCTGTCCATGCTGCCAATCTGATTTCAGGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCAGCAAGTGTTGCTGTCCATGCTGCCAATCTGATTTCAGGCTA  350

seq1  TGGATCATACAAGGCAGGAATGAAAGAACCTATTCTGGCAAGTTGTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATACAAGGCAGGAATGAAAGAACCTATTCTGGCAAGTTGTACTT  400

seq1  TGACTTTTACATTCATGCTATGAGATACTTGCTGTGATAATAGCATGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTACATTCATGCTATGAGATACTTGCTGTGATAATAGCATGCAG  450

seq1  GCCCGTGAAACACACAAACAGAAATAATGCGATAATAACATAATACAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTGAAACACACAAACAGAAATAATGCGATAATAACATAATACAATG  500

seq1  CTTTTATAGGTAAAATATTTGATTGTAAATTAATTACTTCTGAACAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAGGTAAAATATTTGATTGTAAATTAATTACTTCTGAACAATAT  550

seq1  ATAATTTAGTAATTTCTAAAATAGACAATTGACAACATTGAATATTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAGTAATTTCTAAAATAGACAATTGACAACATTGAATATTTTGA  600

seq1  AAAACTTCTGTGAAAATAGAAATAGCCAAATTTACTTAGAATATTTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTCTGTGAAAATAGAAATAGCCAAATTTACTTAGAATATTTTGCC  650

seq1  AAATATTCCTGAAATGAACTACTAAATTGTAAATATTCCAGGAATGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCCTGAAATGAACTACTAAATTGTAAATATTCCAGGAATGTTAT  700

seq1  GTTAAGTTTAAAACTATGAAAAATTTCCACATTTGAGTAATAAAATATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTTTAAAACTATGAAAAATTTCCACATTTGAGTAATAAAATATTA  750

seq1  AATAACAACAATAAAATAATGTAATTATGGTCAAATATAAAGCCAAGATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAACAATAAAATAATGTAATTATGGTCAAATATAAAGCCAAGATA  800

seq1  CCAAGATTGTATTGCCTTGACATTAAATTTTAATTTCTAGTAATTAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATTGTATTGCCTTGACATTAAATTTTAATTTCTAGTAATTAGAAA  850

seq1  TGGCATATTTGTGATGAGAAACAATATTCTGCAGCAACTTTGAATTAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATTTGTGATGAGAAACAATATTCTGCAGCAACTTTGAATTAATA  900

seq1  TATCTTTTGATTTACACCCTACCACGAAATATGTAGGCAAAATTTAGTAT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TATCTTTTGATTTACACCCTACCACGAAATATGTAGGC-AAATTTAGTAT  949

seq1  TTTGATAAATTCTAACACTTGATTTTATGCAAAGAAATATATTTACACAT  1000
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  TTTGATAAATTCTAACACTTGATTTTATGCAA--GAATATATTTACACAT  997

seq1  ATGTAAATGTATATTTATATGTGACATATAAATATATATTCTACATTATA  1050
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGT-AATGTATATTTATATGTGACATATAAATATATATTCTACATTATA  1046

seq1  TAAATACACATTTACATACATATGACATTTACATATATATTTTTATATGT  1100
      |||  ||| |||||||||||||||||| ||||||||||||||||||||||
seq2  TAATAACA-ATTTACATACATATGACA-TTACATATATATTTTTATATGT  1094

seq1  AAGTGCATATGTATATTTTAGTGATCACTTTCACTGATTAATTCTCTTAA  1150
      ||||||||| ||||| |||||||||||||||| |||||| |||||| | |
seq2  AAGTGCATAGGTATA-TTTAGTGATCACTTTCCCTGATT-ATTCTCCTTA  1142

seq1  ATTTACAATTACTTTATAGTCTATGGCATTCTGTAGCTTTTATTTACTTT  1200
      | |||||| |||||| ||||||||||||||||| ||| |||| |||||| 
seq2  AATTACAA-TACTTT-TAGTCTATGGCATTCTGGAGC-TTTAATTACTT-  1188

seq1  CTGTTTCTCCCTTATTACATAAGTTACATTTTTAC  1235
        ||||    | ||| |||| ||||||||||||||
seq2  -CGTTT----CCTATAACAT-AGTTACATTTTTAC  1217

seq1: chr15_23692436_23693084
seq2: B6Ng01-028N14.g_65_713 (reverse)

seq1  CCTTATCTCTTCCCTAGGAGTCCCTGACCTTAGTCCAATGGCTGGCTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTCTTCCCTAGGAGTCCCTGACCTTAGTCCAATGGCTGGCTGTA  50

seq1  TATATCTATATCTGTCTCAGTCAGCTGCTGGTAGAGCCTCTCAGAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTATATCTGTCTCAGTCAGCTGCTGGTAGAGCCTCTCAGAGGACA  100

seq1  GCAATGTTAAATTTCTGCCTGCAAGCACAACATAGCATCAGTAATAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTAAATTTCTGCCTGCAAGCACAACATAGCATCAGTAATAGTGT  150

seq1  CAGGGTTTGCTGTTCTCCCATGGATCCCAAGTTGGGAAGGTCACTGGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTGCTGTTCTCCCATGGATCCCAAGTTGGGAAGGTCACTGGCCT  200

seq1  GCCATTTCTTCAGTCTCTGCTCCATTTTTGTTTTTACATTTCTTTCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTCTTCAGTCTCTGCTCCATTTTTGTTTTTACATTTCTTTCAGAC  250

seq1  AGGAACAGTTCTGGGTCAGAAACATGGTACTCAAAACAAGATGGACATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGTTCTGGGTCAGAAACATGGTACTCAAAACAAGATGGACATTA  300

seq1  TATAACAACCTAAATTAGAACTCTGAGTAACTATGATGTGAGTCAGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAACCTAAATTAGAACTCTGAGTAACTATGATGTGAGTCAGAAGG  350

seq1  AAAATAAAATTATTTGAGTATAAAAAAATGGTAGAGTAATTATAAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAATTATTTGAGTATAAAAAAATGGTAGAGTAATTATAAAAATA  400

seq1  TCAGTGGACATAACCTATGGCTTAAATGTGCACATATATTTTTCTGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGACATAACCTATGGCTTAAATGTGCACATATATTTTTCTGAATC  450

seq1  CTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATGTGTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTATATGTGTATAT  500

seq1  ATGACATCCATTTTTAAAACCAAATTTAAGACTGTTTTGCATTTCACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATCCATTTTTAAAACCAAATTTAAGACTGTTTTGCATTTCACTTT  550

seq1  CCATTTGTCACTTGAGTAGTATTACGAATCCAGAATAAGTTAATGAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTGTCACTTGAGTAGTATTACGAATCCAGAATAAGTTAATGAAAAA  600

seq1  ATCAATTAAAAAGAAAATTGCTTTTATATGAGGTTTTATTTCTGAATTC  649
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTAAAAAGAAAATTGCTTTTATATGAGGTTTTATTTCTGAATTC  649