BAC Information

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BAC

Clone NameB6Ng01-029M07
Chromosome15 (Build37)
Map Location 102,482,531 - 102,610,239
singlet/doubletdoublet
Overlap geneLOC100043600, Atp5g2, Calcoco1
Upstream geneKrt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7
Downstream geneLOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029M07.bB6Ng01-029M07.g
ACCDH859874DH859875
length460485
definitionDH859874|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M07, 5' end.DH859875|Mus musculus domesticus DNA, BAC clone: B6Ng01-029M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,482,531 - 102,482,996)(102,609,749 - 102,610,239)
sequence
tgcattcctaattagttaggttagaggggaggaagcttcatctccttcag
atgatcactgttagaatgactcagtggggctggtgagatggctcaatggg
taagagcacccgactgctcttctgaaggtctggagttcaaatcccagcaa
ccacatggtggctcacaaccatctgtaacaagatctgacgccctcttctg
gagtgtctgaagacagctacagttgtacttacatataataaataaataaa
actttaaaaaaaaaaaaaaaaaagaatgactcagtgatgaccctgtgata
tctgtggttacgattgtttattgatgtttgcatcagtccaggttggcagc
cctcagaaggctccagtgtctcccaaccccaactggaatcaatcttattc
aagaggcaaagtttcttttgttgttgttgtcgtcttttggggggaaggaa
ggggtttgtt
tatgggaatgcagactgaaacccaaggaggttgctcctggcattctcttg
ctgcagggggggttattatcccttgttctttgagtgagcaacactgttct
caagactgagggaggcagtcagaaggaaggattacagttagcacttgctc
tgagcaagacaggagaattctcaggacccagacaagactgaagagaagca
aaattgggatcagcagctgaccagttctagatgctagaaggttggggagt
agctatttgtcaaagaaaccttctaaaggatgaatttagggagcaagaca
gtgctggtcttacaatgaggggactcttgtactgtgaaaatgagtaaacc
tcggttcaatgcaactgggtattaagactccttatgtgcctcgcacttgg
ctgggtgctgaaggcagtaaataagatacacactccttaccaggaataga
cagtcaggtgtgtgtattggtggatgagggggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102482531_102482996
seq2: B6Ng01-029M07.b_48_513

seq1  GAATTCTGCATTCCTAATTAGTTAGGTTAGAGGGGAGGAAGCTTCATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCATTCCTAATTAGTTAGGTTAGAGGGGAGGAAGCTTCATCTC  50

seq1  CTTCAGATGATCACTGTTAGAATGACTCAGTGGGGCTGGTGAGATGGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATGATCACTGTTAGAATGACTCAGTGGGGCTGGTGAGATGGCTC  100

seq1  AATGGGTAAGAGCACCCGACTGCTCTTCTGAAGGTCTGGAGTTCAAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTAAGAGCACCCGACTGCTCTTCTGAAGGTCTGGAGTTCAAATCC  150

seq1  CAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCACATGGTGGCTCACAACCATCTGTAACAAGATCTGACGCCCT  200

seq1  CTTCTGGAGTGTCTGAAGACAGCTACAGTTGTACTTACATATAATAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGAGTGTCTGAAGACAGCTACAGTTGTACTTACATATAATAAATA  250

seq1  AATAAAACTTTAAAAAAAAAAAAAAAAAAGAATGACTCAGTGATGACCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTTTAAAAAAAAAAAAAAAAAAGAATGACTCAGTGATGACCCT  300

seq1  GTGATATCTGTGGTTACGATTGTTTATTGATGTTTGCATCAGTCCAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATCTGTGGTTACGATTGTTTATTGATGTTTGCATCAGTCCAGGTT  350

seq1  GGCAGCCCTCAGAAGGCTCCAGTGTCTCCCAACCCCAACTGGAATCAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCCTCAGAAGGCTCCAGTGTCTCCCAACCCCAACTGGAATCAATC  400

seq1  TTATTCAAGAGGCAAAGTTTCTTTTGTTGTTGTTGTCGTCTTTTGGGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAAGAGGCAAAGTTTCTTTTGTTGTTGTTGTCGTCTTTTGGGGGG  450

seq1  AAGGAAGGGGTTTGTT  466
      ||||||||||||||||
seq2  AAGGAAGGGGTTTGTT  466

seq1: chr15_102609749_102610239
seq2: B6Ng01-029M07.g_68_558 (reverse)

seq1  TCTCCCCCTCATCCACCAATACACACACCTGACTGTCTATTCCTGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCTCATCCACCAATACACACACCTGACTGTCTATTCCTGGTAAG  50

seq1  GAGTGTGTATCTTATTTACTGCCTTCAGCACCCAGCCAAGTGCGAGGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTATCTTATTTACTGCCTTCAGCACCCAGCCAAGTGCGAGGCAC  100

seq1  ATAAGGAGTCTTAATACCCAGTTGCATTGAACCGAGGTTTACTCATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGTCTTAATACCCAGTTGCATTGAACCGAGGTTTACTCATTTTC  150

seq1  ACAGTACAAGAGTCCCCTCATTGTAAGACCAGCACTGTCTTGCTCCCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACAAGAGTCCCCTCATTGTAAGACCAGCACTGTCTTGCTCCCTAA  200

seq1  ATTCATCCTTTAGAAGGTTTCTTTGACAAATAGCTACTCCCCAACCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCTTTAGAAGGTTTCTTTGACAAATAGCTACTCCCCAACCTTCT  250

seq1  AGCATCTAGAACTGGTCAGCTGCTGATCCCAATTTTGCTTCTCTTCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTAGAACTGGTCAGCTGCTGATCCCAATTTTGCTTCTCTTCAGTC  300

seq1  TTGTCTGGGTCCTGAGAATTCTCCTGTCTTGCTCAGAGCAAGTGCTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGGGTCCTGAGAATTCTCCTGTCTTGCTCAGAGCAAGTGCTAACT  350

seq1  GTAATCCTTCCTTCTGACTGCCTCCCTCAGTCTTGAGAACAGTGTTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCTTCCTTCTGACTGCCTCCCTCAGTCTTGAGAACAGTGTTGCTC  400

seq1  ACTCAAAGAACAAGGGATAATAACCCCCCCTGCAGCAAGAGAATGCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAAGAACAAGGGATAATAACCCCCCCTGCAGCAAGAGAATGCCAGG  450

seq1  AGCAACCTCCTTGGGTTTCAGTCTGCATTCCCATAGAATTC  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCTCCTTGGGTTTCAGTCTGCATTCCCATAGAATTC  491