BAC Information

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BAC

Clone NameB6Ng01-029P07
Chromosome15 (Build37)9 (Build37)
Map Location 39,234,081 - 39,235,23996,718,221 - 96,718,638
singlet/doubletsingletsinglet
Overlap geneRims2
Upstream geneAzin1, Siah1-ps2, Atp6v1c1, Baalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215
Downstream geneTm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-029P07.bB6Ng01-029P07.g
ACCDH860004DH860005
length1,139717
definitionDH860004|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P07, 5' end.DH860005|Mus musculus domesticus DNA, BAC clone: B6Ng01-029P07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,234,081 - 39,235,239)(96,718,221 - 96,718,638)
sequence
gaattcaaagtatagagttgccatcagaaagtttctgggaagaattttct
aactttcctctgatagttggcagcatttagttgttctcagtgccaaatga
agtccctgtttctttagaggttggtggtacaggggtattacttagcttta
gaggtctcttgtatttgacctatggtttcttcccttttcaaagacattaa
tgaatggcacctccagtcctcttgtttgaaatatatttttttttatttct
ttttctgctactaacaagaaagtactttgtactgttcaaggaatcctgtg
attgagttggaccaactcaagttatgcttcatttgattaaaccagagtca
attgattaataaccttaaaacacatgttaaatttttatttcaatcaaatg
acacaatgcagtcttaaatatgacgcattttatgatagggtggaaattta
ggatgggaggtaaaacactgacagaattttttttaccaaacagcataaga
agaaatatttaaattgaaataaaaaagattgctaccataatataaataaa
tactaattggatgcttagactaatggattacaatattatgtttacttcca
attctgtatgtttaagttcaataaaatggtttaatatctgttgcggtaaa
tctccccaaccccaaaatgccccagcaatgaaaacacaacacagctaata
tgattacattttgtgcgcctagattgggcagatctaccgctatacaacca
tcttctccatctatgagaccccttagaacttgcagtttctccaggccatg
tgcttctgctccgcttttcttcttcttcttcttcctcctctccttcctct
ccctcttccattttctctttcttctctcccccatcttctgctccaccttc
ccttttatctgaccaagcatcagctttcctttattttacaaataaggtgg
gaagcaggtttacaggaaatcacctgagtgctgactcattcctcatcaca
tgaaacccttcacaggagaatggaattaacatcatattaatagctccagg
gctatcaaacaatgttggtttgtatctcctttttttttttttaatcggat
aacaatccttcagactaattttacatcattctatatgct
gaattccatgatgtttcatcgagcctacttgcaatcttaactagtaggtg
attctgacttcttattcgtaccttcaggcttaggatcaagggcatacata
ttgcttaaaaaatagaaatatttattatttgttatattctgagacaattt
attcaggactataaaagtctgttctgtgagcactgtcaaaatctactaca
tcatttgtgggaatagttgaaattactaattctaccttgccgtagatgta
gaagaaaactgattcaaagtttaataaatactgtttttttttctttccat
tttttattaggtatttagctcatttacatttccaatgctataccaaaagt
cccccatacccacccacccccactctcctacccgcccactcccccttttt
ggccctggcgttcccctgttctggggcatataaagtttgtgtgtccaatg
ggcctctctttccagtgatggccgactaggccatcctttgatacatatgc
agctagagtcaagagctccggggtattggttagttcataatgttgatcca
cctatagggttgcagatccctttagctccttgggtactttctctagctcc
tccattgggagccctgtgatccatccattagctgactgtgggcatccact
tctgtgtttgctaggccccggcatagtctcacaagagacagctacatctg
ggtcctttcgataaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39234081_39235239
seq2: B6Ng01-029P07.b_49_1187

seq1  GAATTCAAAGTATAGAGTTGCCATCAGAAAGTTTCTGGGAAGAATTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTATAGAGTTGCCATCAGAAAGTTTCTGGGAAGAATTTTCT  50

seq1  AACTTTCCTCTGATAGTTGGCAGCATTTAGTTGTTCTCAGTGCCAAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCCTCTGATAGTTGGCAGCATTTAGTTGTTCTCAGTGCCAAATGA  100

seq1  AGTCCCTGTTTCTTTAGAGGTTGGTGGTACAGGGGTATTACTTAGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGTTTCTTTAGAGGTTGGTGGTACAGGGGTATTACTTAGCTTTA  150

seq1  GAGGTCTCTTGTATTTGACCTATGGTTTCTTCCCTTTTCAAAGACATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTCTTGTATTTGACCTATGGTTTCTTCCCTTTTCAAAGACATTAA  200

seq1  TGAATGGCACCTCCAGTCCTCTTGTTTGAAATATATTTTTTTTTATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCACCTCCAGTCCTCTTGTTTGAAATATATTTTTTTTTATTTCT  250

seq1  TTTTCTGCTACTAACAAGAAAGTACTTTGTACTGTTCAAGGAATCCTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCTACTAACAAGAAAGTACTTTGTACTGTTCAAGGAATCCTGTG  300

seq1  ATTGAGTTGGACCAACTCAAGTTATGCTTCATTTGATTAAACCAGAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTGGACCAACTCAAGTTATGCTTCATTTGATTAAACCAGAGTCA  350

seq1  ATTGATTAATAACCTTAAAACACATGTTAAATTTTTATTTCAATCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTAATAACCTTAAAACACATGTTAAATTTTTATTTCAATCAAATG  400

seq1  ACACAATGCAGTCTTAAATATGACGCATTTTATGATAGGGTGGAAATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGCAGTCTTAAATATGACGCATTTTATGATAGGGTGGAAATTTA  450

seq1  GGATGGGAGGTAAAACACTGACAGAATTTTTTTTACCAAACAGCATAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAGGTAAAACACTGACAGAATTTTTTTTACCAAACAGCATAAGA  500

seq1  AGAAATATTTAAATTGAAATAAAAAAGATTGCTACCATAATATAAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATTTAAATTGAAATAAAAAAGATTGCTACCATAATATAAATAAA  550

seq1  TACTAATTGGATGCTTAGACTAATGGATTACAATATTATGTTTACTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTGGATGCTTAGACTAATGGATTACAATATTATGTTTACTTCCA  600

seq1  ATTCTGTATGTTTAAGTTCAATAAAATGGTTTAATATCTGTTGCGGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTATGTTTAAGTTCAATAAAATGGTTTAATATCTGTTGCGGTAAA  650

seq1  TCTCCCCAACCCCAAAATGCCCCAGCAATGAAAACACAACACAGCTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCAACCCCAAAATGCCCCAGCAATGAAAACACAACACAGCTAATA  700

seq1  TGATTACATTTTGTGCGCCTAGATTGGGCAGATCTACCGCTATACAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTACATTTTGTGCGCCTAGATTGGGCAGATCTACCGCTATACAACCA  750

seq1  TCTTCTCCATCTATGAGACCCCTTAGAACTTGCAGTTTCTCCAGGCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCATCTATGAGACCCCTTAGAACTTGCAGTTTCTCCAGGCCATG  800

seq1  TGCTTCTGCTCCGCTTTTCTTCTTCTTCTTCTTCCTCCTCTCCTTCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTGCTCCGCTTTTCTTCTTCTTCTTCTTCCTCCTCTCCTTCCTCT  850

seq1  CCCTCTTCCATTTTCTCTTTCTTCTCTCCCCCATCTTCTGCTCCACCTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCCATTTTCTCTTTCTTCTCTCCCCCATCTTCTGCTCCACCTTC  900

seq1  CCTTTTATCTGACCAAGCATCAGCTTTCCTTTATTTTACAAATTAAGGTG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTTTTATCTGACCAAGCATCAGCTTTCCTTTATTTTACAAA-TAAGGTG  949

seq1  GGAAGCAGGTTTACAGGAAATCACCTGAGTGCTGACTCATTCCTCATTCA  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAAGCAGGTTTACAGGAAATCACCTGAGTGCTGACTCATTCCTCA-TCA  998

seq1  CATGAAACCCTTCACAGGAGAATGGAATTAACATCAAATATAATTAGCCC  1050
      |||||||||||||||||||||||||||||||||||  |||| | |||| |
seq2  CATGAAACCCTTCACAGGAGAATGGAATTAACATC--ATATTAATAGCTC  1046

seq1  CAGGGCTATCCACAACAAATGTTTGTTTTGTATTCTTCTTTTTTTTTTTT  1100
      |||||||||   |||  |||| ||| |||||| ||| |    ||||||||
seq2  CAGGGCTAT---CAAACAATG-TTGGTTTGTA-TCTCC----TTTTTTTT  1087

seq1  TTTTTATTCTGGATAACAATCCTTCAAAACATAATTTTTACTATCATTTC  1150
      |||||| || |||||||||||||||| |   ||| |||||| |||| |||
seq2  TTTTTAATC-GGATAACAATCCTTCAGA--CTAA-TTTTAC-ATCA-TTC  1131

seq1  TATTATGCT  1159
      || ||||||
seq2  TA-TATGCT  1139

seq1: chr9_96718221_96718638
seq2: B6Ng01-029P07.g_356_773 (reverse)

seq1  GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCTAGCAAACA  50

seq1  CAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAA  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGGATGCCCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAA  100

seq1  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTA  150
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTA  150

seq1  TAGGTGGAACAACATTATGAACTAACCAGTACCCCTGAGCTCTTGACTCT  200
      |||||||| ||||||||||||||||||| |||||| ||||||||||||||
seq2  TAGGTGGATCAACATTATGAACTAACCAATACCCCGGAGCTCTTGACTCT  200

seq1  AGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGA  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGCTGCATATGTATCAAAGGATGGCCTAGTCGGCCATCACTGGAAAGAGA  250

seq1  GGCCCATTGGACACGCAGACTTTGTGTGCCCCGGTACAGGGGAACGCCAG  300
      |||||||||||||| || ||||| | |||||| | |||||||||||||||
seq2  GGCCCATTGGACACACAAACTTTATATGCCCCAGAACAGGGGAACGCCAG  300

seq1  GGCCAAAGGGGGGAAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTAAG  350
      |||||||  |||| |||||| ||||||| ||||||||||||||||||| |
seq2  GGCCAAAAAGGGGGAGTGGGCGGGTAGGAGAGTGGGGGTGGGTGGGTATG  350

seq1  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATA  400

seq1  AAAAATGGAAAAAAAAAA  418
      ||||||||||| ||||||
seq2  AAAAATGGAAAGAAAAAA  418