BAC Information

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BAC

Clone NameB6Ng01-030N17
Chromosome15 (Build37)
Map Location 16,457,306 - 16,580,300
singlet/doubletdoublet
Overlap geneLOC100040119
Upstream geneEG239341, LOC100040087, LOC624183
Downstream geneCdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030N17.bB6Ng01-030N17.g
ACCDH860635DH860636
length2631,100
definitionDH860635|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N17, 5' end.DH860636|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,580,038 - 16,580,300)(16,457,306 - 16,458,428)
sequence
tattaaacttaatttgtctatttttagtatcctatacaggaatgatatca
acccttcaatcacttttcttctattttatgtgttggggtgggttgatgtt
ctcactcatccttctcaggattcatttgaaggaattgacaatggaaggaa
taacacgagaatgtgtcagaagataggattggaaatcacgggagactgat
ttttcaatgactctctgaaagtcagatattcacatgcccttcctcacggg
ggtggggtgggga
gaattcatgacattgttttaaaaatccatgcatatatttttgtatagagt
acatttacacctctttacctacttagaacagatacttgcaattcattgga
atgtagactctctatttatgacgaaatatcaatatcttgagggtgactct
acttttctgctagggccacccttctgttttatttacagtttcatttcttt
gccatccaataagtgacattcttgcactaactacattcaaaagtttccta
atttatttatcagactttgctcttcctaagaaagccacatcattctcatc
tcatctcatctccttcatcacctgacggatgaatggctcatcttgcagct
tgttctgatgtttcaaaatacaatacaggaggaaatctcatatgaaggac
aaggttgttagaaccaaagacagactcattgctgatctccaacacgtacg
aatacaaactatgctttgtctcaaaatggaagagcctgaagatcgtgtaa
gaaatacaaggatagtagagagtgcttcttttccattattgtaacaagaa
gcattggatctgaacttctcctttttaatcagttgatgagaaaaatatat
atgtgcatagtaagagtaaattggatttttgaattaaatttgatattgat
aaacaataattaaccatagtacatatatatgtgtacatatgtgtgtgaaa
atattaatatatgtatatatgtgtatatccttataaatcatgacactatg
tattcatattggttggcaaactaaacagtttaatagttcgtacatttgta
gttcttattgctttttaagtgttatgtttattcagataacaataaaaatg
tcatttcctggaaaggagaaaggtttagttatgtgttttattattcaagt
atgaggattgaatttatcccaagttcccccgaaagcagaccaatgctgaa
cacgcagcagtattccagtgttgaggtgatggatcagtactgaaactgaa
gaatcactggagcctccctgttggacagtagaaaaccatgtgatctcgaa
tacagaaattatgactgagccctcaacagccataagccttatgaaagata

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16580038_16580300
seq2: B6Ng01-030N17.b_51_313 (reverse)

seq1  TCCCCACCCCACCCCCGTGAGGAAGGGCATGTGAATATCTGACTTTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCACCCCACCCCCGTGAGGAAGGGCATGTGAATATCTGACTTTCAGA  50

seq1  GAGTCATTGAAAAATCAGTCTCCCGTGATTTCCAATCCTATCTTCTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATTGAAAAATCAGTCTCCCGTGATTTCCAATCCTATCTTCTGACA  100

seq1  CATTCTCGTGTTATTCCTTCCATTGTCAATTCCTTCAAATGAATCCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCGTGTTATTCCTTCCATTGTCAATTCCTTCAAATGAATCCTGAG  150

seq1  AAGGATGAGTGAGAACATCAACCCACCCCAACACATAAAATAGAAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGAGTGAGAACATCAACCCACCCCAACACATAAAATAGAAGAAAA  200

seq1  GTGATTGAAGGGTTGATATCATTCCTGTATAGGATACTAAAAATAGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGAAGGGTTGATATCATTCCTGTATAGGATACTAAAAATAGACAA  250

seq1  ATTAAGTTTAATA  263
      |||||||||||||
seq2  ATTAAGTTTAATA  263

seq1: chr15_16457306_16458428
seq2: B6Ng01-030N17.g_70_1169

seq1  GAATTCATGACATTGTTTTAAAAATCCATGCATATATTTTTGTATAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACATTGTTTTAAAAATCCATGCATATATTTTTGTATAGAGT  50

seq1  ACATTTACACCTCTTTACCTACTTAGAACAGATACTTGCAATTCATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTACACCTCTTTACCTACTTAGAACAGATACTTGCAATTCATTGGA  100

seq1  ATGTAGACTCTCTATTTATGACGAAATATCAATATCTTGAGGGTGACTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGACTCTCTATTTATGACGAAATATCAATATCTTGAGGGTGACTCT  150

seq1  ACTTTTCTGCTAGGGCCACCCTTCTGTTTTATTTACAGTTTCATTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTGCTAGGGCCACCCTTCTGTTTTATTTACAGTTTCATTTCTTT  200

seq1  GCCATCCAATAAGTGACATTCTTGCACTAACTACATTCAAAAGTTTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCAATAAGTGACATTCTTGCACTAACTACATTCAAAAGTTTCCTA  250

seq1  ATTTATTTATCAGACTTTGCTCTTCCTAAGAAAGCCACATCATTCTCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATCAGACTTTGCTCTTCCTAAGAAAGCCACATCATTCTCATC  300

seq1  TCATCTCATCTCCTTCATCACCTGACGGATGAATGGCTCATCTTGCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCATCTCCTTCATCACCTGACGGATGAATGGCTCATCTTGCAGCT  350

seq1  TGTTCTGATGTTTCAAAATACAATACAGGAGGAAATCTCATATGAAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGATGTTTCAAAATACAATACAGGAGGAAATCTCATATGAAGGAC  400

seq1  AAGGTTGTTAGAACCAAAGACAGACTCATTGCTGATCTCCAACACGTACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGTTAGAACCAAAGACAGACTCATTGCTGATCTCCAACACGTACG  450

seq1  AATACAAACTATGCTTTGTCTCAAAATGGAAGAGCCTGAAGATCGTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAACTATGCTTTGTCTCAAAATGGAAGAGCCTGAAGATCGTGTAA  500

seq1  GAAATACAAGGATAGTAGAGAGTGCTTCTTTTCCATTATTGTAACAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAAGGATAGTAGAGAGTGCTTCTTTTCCATTATTGTAACAAGAA  550

seq1  GCATTGGATCTGAACTTCTCCTTTTTAATCAGTTGATGAGAAAAATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGATCTGAACTTCTCCTTTTTAATCAGTTGATGAGAAAAATATAT  600

seq1  ATGTGCATAGTAAGAGTAAATTGGATTTTTGAATTAAATTTGATATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATAGTAAGAGTAAATTGGATTTTTGAATTAAATTTGATATTGAT  650

seq1  AAACAATAATTAACCATAGTACATATATATGTGTACATATGTGTGTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAATTAACCATAGTACATATATATGTGTACATATGTGTGTGAAA  700

seq1  ATATTAATATATGTATATATGTGTATATCCTTATAAATCATGACACTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATATATGTATATATGTGTATATCCTTATAAATCATGACACTATG  750

seq1  TATTCATATTGGTTGGCAAACTAAACAGTTTAATAGTTCGTACATTTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATATTGGTTGGCAAACTAAACAGTTTAATAGTTCGTACATTTGTA  800

seq1  GTTCTTATTGCTTTTTAAGTGTTATGTTTATTCAGATAACAATAAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTATTGCTTTTTAAGTGTTATGTTTATTCAGATAACAATAAAAATG  850

seq1  TCATTTCCTGGAAAGGAGAAATGGTTTAGTTATGTGTTTTATTATTCAAG  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCATTTCCTGGAAAGGAGAAA-GGTTTAGTTATGTGTTTTATTATTCAAG  899

seq1  TATGAGGAATTGAATTTTAATCCCAAGTTCCCCCCCGAAAAGCCAGACAC  950
      ||||||| |||||||||  ||||||||||  |||||||||   ||||| |
seq2  TATGAGG-ATTGAATTT--ATCCCAAGTT--CCCCCGAAA--GCAGAC-C  941

seq1  AATGCTGAACACCGCAGCAGTAATTCCAGTGTTTGAGGTGAATGGATCAG  1000
      ||||||||||| ||||||||| ||||||||| |||||||| |||||||||
seq2  AATGCTGAACA-CGCAGCAGT-ATTCCAGTG-TTGAGGTG-ATGGATCAG  987

seq1  TACTTGGAGACTTGAGGATCACTGTAG-CTCCCTGTTTGGACAGTTTAGA  1049
      ||||  || |||  || ||||||| || ||||||| ||||||||  ||||
seq2  TACT--GAAACTGAAGAATCACTGGAGCCTCCCTG-TTGGACAG--TAGA  1032

seq1  AAAACCAGTGATCCTCAGATACAGAAATTATGACTGAG-CCTCAAAAACA  1098
      ||| |  ||||| |||  |||||||||||||||||||| ||||||     
seq2  AAACCATGTGAT-CTCGAATACAGAAATTATGACTGAGCCCTCAA----C  1077

seq1  AGCCATAAAGCATTAAAGAAAGATA  1123
      |||||| |||| || | ||||||||
seq2  AGCCAT-AAGCCTT-ATGAAAGATA  1100