BAC Information

Click to search

BAC

Clone NameB6Ng01-030P15
Chromosome15 (Build37)
Map Location 21,171,537 - 21,172,623
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030P15.bB6Ng01-030P15.g
ACCDH860722DH860723
length961,072
definitionDH860722|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P15, 5' end.DH860723|Mus musculus domesticus DNA, BAC clone: B6Ng01-030P15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tgaggtagtactatgtccagttatctaaggaaatgccagactgattattg
ttgctgaactattcaatctcaatctggggggggggggggtacgggg
gaattcctgaatgttatgtatctattcacatgctatccagtatcaaaaca
atctcaaaaaaatctgtccattgtcctgacagaaaattattaaaatttta
tcacttgagaaaaagatattttttactgcaatgaagtttgattatttgac
ttaatacatagttttataatttgttgtctgttgacatttcttgattttta
aaaccctagttttcttatgtttaaaatgcagatactaataaaaaccttca
taattctattttgaaggttatgcaagtttatctatgtaaagcaattaaaa
tagtgcccaaaggaagcatttaataaatttacctattataattgcaacct
gggaaccttcaaatttccatttatcctcacatggcttaatactgtctcaa
gtgataatgcattctacatcaacaattttttacgaaatggtaatggatct
gaaagcatagcctacaagtgatttaattttatatatttcttttagacaat
aaaatttgaagaaatactgttagttgtagcccatccagttgttaaaatga
caagtcagtaatttctgtaagaataaatgagcagtagtttctagaagcat
acgccaagtctctatcaaaacagttttatagacatgcagttacttcgact
tgggcaaatctaagtaattattggttaatgtgcatttgctcatattttct
tgattttattactttcctttctttttttcttgtgctttaattgataaaac
cgcagactgtattttcagtaagtatatattaaattacaaaaaaaaaatct
tagattcagcctgagtatttactaaatcaataccttattttgtggaaatg
actgtcattttcattggatattcctctattttcttcaaatagagataaca
tattcatcataatgcattatataactgtcttgaatatgtgccaaccttag
tatcttcatattaaatctaaaatttccgatgcttttttttaatgacatct
aaatgatgcagctttcactgatgaggattcatgaggcattttgggtatga
gtaaataaacaaattatctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21171537_21172623
seq2: B6Ng01-030P15.g_67_1138 (reverse)

seq1  GAGAGATAATTAGTTTAATTTATCTATACCCAAAAATGGCCTCATGAAAT  50
      ||||||||||| |||| |||||   ||||||||||   ||||||||||  
seq2  GAGAGATAATTTGTTT-ATTTACTCATACCCAAAA--TGCCTCATGAATC  47

seq1  CTCATCAAGTGAAAAGCTGGCATCATTTAGATGTCATTAAAAAAAAAGGC  100
      |||||| |||| |||||| |||||||||||||||||||||||||||  ||
seq2  CTCATC-AGTG-AAAGCT-GCATCATTTAGATGTCATTAAAAAAAA--GC  92

seq1  ATCGAAAATTTTAGATTTTAATATTGGAAGATACTAAGGTTGGCACATAT  150
      |||| |||||||||| ||||||||  ||||||||||||||||||||||||
seq2  ATCGGAAATTTTAGA-TTTAATAT--GAAGATACTAAGGTTGGCACATAT  139

seq1  TCAAGGACAGTTATATAATGCATTATGATGAATATTGTTTATCTCTATTT  200
      |||| ||||||||||||||||||||||||||||||   ||||||||||||
seq2  TCAA-GACAGTTATATAATGCATTATGATGAATAT--GTTATCTCTATTT  186

seq1  GAAGAAAATAGAGGAATATCCAATGAAAATGACAGTCATTTCCACAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATAGAGGAATATCCAATGAAAATGACAGTCATTTCCACAAAAT  236

seq1  AAGGTATTGATTTAGTAAAATACTCAGGCTGAATCTAAGATTTTTTTTTT  300
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGGTATTGATTTAGT-AAATACTCAGGCTGAATCTAAGATTTTTTTTTT  285

seq1  GTAATTTAATATATACTTACTGAAAATACAGTCTGCGGTTTTATCAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTAATATATACTTACTGAAAATACAGTCTGCGGTTTTATCAATTA  335

seq1  AAGCACAAGAAAAAAAGAAAGGAAAGTAATAAAATCAAGAAAATATGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAAGAAAAAAAGAAAGGAAAGTAATAAAATCAAGAAAATATGAGC  385

seq1  AAATGCACATTAACCAATAATTACTTAGATTTGCCCAAGTCGAAGTAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACATTAACCAATAATTACTTAGATTTGCCCAAGTCGAAGTAACT  435

seq1  GCATGTCTATAAAACTGTTTTGATAGAGACTTGGCGTATGCTTCTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCTATAAAACTGTTTTGATAGAGACTTGGCGTATGCTTCTAGAAA  485

seq1  CTACTGCTCATTTATTCTTACAGAAATTACTGACTTGTCATTTTAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTCATTTATTCTTACAGAAATTACTGACTTGTCATTTTAACAAC  535

seq1  TGGATGGGCTACAACTAACAGTATTTCTTCAAATTTTATTGTCTAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGGCTACAACTAACAGTATTTCTTCAAATTTTATTGTCTAAAAGA  585

seq1  AATATATAAAATTAAATCACTTGTAGGCTATGCTTTCAGATCCATTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATAAAATTAAATCACTTGTAGGCTATGCTTTCAGATCCATTACCA  635

seq1  TTTCGTAAAAAATTGTTGATGTAGAATGCATTATCACTTGAGACAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTAAAAAATTGTTGATGTAGAATGCATTATCACTTGAGACAGTATT  685

seq1  AAGCCATGTGAGGATAAATGGAAATTTGAAGGTTCCCAGGTTGCAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGTGAGGATAAATGGAAATTTGAAGGTTCCCAGGTTGCAATTAT  735

seq1  AATAGGTAAATTTATTAAATGCTTCCTTTGGGCACTATTTTAATTGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTAAATTTATTAAATGCTTCCTTTGGGCACTATTTTAATTGCTTT  785

seq1  ACATAGATAAACTTGCATAACCTTCAAAATAGAATTATGAAGGTTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGATAAACTTGCATAACCTTCAAAATAGAATTATGAAGGTTTTTAT  835

seq1  TAGTATCTGCATTTTAAACATAAGAAAACTAGGGTTTTAAAAATCAAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCTGCATTTTAAACATAAGAAAACTAGGGTTTTAAAAATCAAGAA  885

seq1  ATGTCAACAGACAACAAATTATAAAACTATGTATTAAGTCAAATAATCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACAGACAACAAATTATAAAACTATGTATTAAGTCAAATAATCAA  935

seq1  ACTTCATTGCAGTAAAAAATATCTTTTTCTCAAGTGATAAAATTTTAATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTGCAGTAAAAAATATCTTTTTCTCAAGTGATAAAATTTTAATA  985

seq1  ATTTTCTGTCAGGACAATGGACAGATTTTTTTGAGATTGTTTTGATACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGTCAGGACAATGGACAGATTTTTTTGAGATTGTTTTGATACTG  1035

seq1  GATAGCATGTGAATAGATACATAACATTCAGGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  GATAGCATGTGAATAGATACATAACATTCAGGAATTC  1072