BAC Information

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BAC

Clone NameB6Ng01-031C06
Chromosome15 (Build37)X (Build37)
Map Location 57,888,955 - 57,889,961100,263,961 - 100,264,034
singlet/doubletsingletsinglet
Overlap geneZhx1
Upstream geneBC026439, Zhx2, Derl1, Wdr67, BC030396, 9130401M01Rik
Downstream geneAtad2, LOC665244, 2410187C16Rik, Fbxo32, 8230402K04Rik, Anxa13, LOC100040231, D15Ertd621e, EG631797, Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031C06.bB6Ng01-031C06.g
ACCDH860839DH860840
length1,000184
definitionDH860839|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C06, 5' end.DH860840|Mus musculus domesticus DNA, BAC clone: B6Ng01-031C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(57,888,955 - 57,889,961)(100,263,961 - 100,264,034)
sequence
gaattcactctagattggtttcagataattcggcacagctggggtatagt
gagatggtttggatgaagttgattcattgttttaaaagtattttaagttt
gcaagacacagtttttttaaaagccactcttagaacccctagaggtagag
gcagggtcctggggccagggactcttgtcaggatgtagttgagcctctag
ctccttcagtgagctacctactctctagttcttcctttaaaaatgtgttc
attctcagatattcattgtacatggcagtgcgcttcataaagacgtttcc
atattctttttttttttagatattttcttcatttacatttcaaatgttat
ccccaaagtcccctataccctccccctgccctgctccccaacccacccac
tcccacttcctggccctggcagtcccctgtattggggcatatgatcttcg
aaagaccaagggcctctcctcccattgatggcacatttccatattctttt
ttttttttttttggtttttcaagacagggtttctctgaagtcctggctgt
cctggaactcactttgtagaccaggctggcctcgaactcagaaatctgcc
tgcctctgcctccctcccaagtgctgggattaaaggcgtgcgccaccaac
atttccatattcttaaagtaaataactggggcacattcacccctcctgtt
ctttctccttgctgcctgctcttcttcacattcattctcccaattagctt
tgcttctattccatgttctatataaacatatgcttttatgtgtctgtata
aaattgaggagccataaagagctaaaacatggaatattgtctttctgagg
ttgattttttttctcttatatgatcatctttagtagcatacgctcataaa
cataatttgactgacattttggctttcagagtaattttgtttgaaagggc
ccctctttaaaaaatttatttatttatttatttaattgagtacactgtag

acatagaacacaaataattgcataaagagatgctaagcctcatttgccat
ttcagaagaagaaattaaaatcgccatggatactgcaatatcctcagagt
ggccaaaatgacagattcattaccaacgaggagcacctggactcctgctt
tgaggtggtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_57888955_57889961
seq2: B6Ng01-031C06.b_45_1044 (reverse)

seq1  CTACAGTGTACTCATATACATTAAATAAATAAATAAATTTTTTTTAAAGG  50
      |||||||||||||| ||  | ||||||||||||||||||||||   || |
seq2  CTACAGTGTACTCA-ATTAAATAAATAAATAAATAAATTTTTT---AAAG  46

seq1  AGGGGCCCTTTTCAAACAAAATTACTCTGAAAAGCCAAAATGTCAGTCAA  100
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  AGGGGCCC-TTTCAAACAAAATTACTCTG-AAAGCCAAAATGTCAGTCAA  94

seq1  ATTATGTTTATGAGCGTATGCTACTAAAGATGATCATATTAAGAGAAAAA  150
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATTATGTTTATGAGCGTATGCTACTAAAGATGATCATA-TAAGAGAAAAA  143

seq1  AAATCAACCTCAGAAAGACAATATTCCATGTTTTAGCTCTTTATGGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACCTCAGAAAGACAATATTCCATGTTTTAGCTCTTTATGGCTCC  193

seq1  TCAATTTTATACAGACACATAAAAGCATATGTTTATATAGAACATGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTATACAGACACATAAAAGCATATGTTTATATAGAACATGGAAT  243

seq1  AGAAGCAAAGCTAATTGGGAGAATGAATGTGAAGAAGAGCAGGCAGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAAGCTAATTGGGAGAATGAATGTGAAGAAGAGCAGGCAGCAAG  293

seq1  GAGAAAGAACAGGAGGGGTGAATGTGCCCCAGTTATTTACTTTAAGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAACAGGAGGGGTGAATGTGCCCCAGTTATTTACTTTAAGAATA  343

seq1  TGGAAATGTTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGGAGGC  393

seq1  AGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAG  443

seq1  TTCCAGGACAGCCAGGACTTCAGAGAAACCCTGTCTTGAAAAACCAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGACTTCAGAGAAACCCTGTCTTGAAAAACCAAAAA  493

seq1  AAAAAAAAAAAGAATATGGAAATGTGCCATCAATGGGAGGAGAGGCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGAATATGGAAATGTGCCATCAATGGGAGGAGAGGCCCTT  543

seq1  GGTCTTTCGAAGATCATATGCCCCAATACAGGGGACTGCCAGGGCCAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTCGAAGATCATATGCCCCAATACAGGGGACTGCCAGGGCCAGGA  593

seq1  AGTGGGAGTGGGTGGGTTGGGGAGCAGGGCAGGGGGAGGGTATAGGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGTGGGTGGGTTGGGGAGCAGGGCAGGGGGAGGGTATAGGGGAC  643

seq1  TTTGGGGATAACATTTGAAATGTAAATGAAGAAAATATCTAAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGATAACATTTGAAATGTAAATGAAGAAAATATCTAAAAAAAAAA  693

seq1  AGAATATGGAAACGTCTTTATGAAGCGCACTGCCATGTACAATGAATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATGGAAACGTCTTTATGAAGCGCACTGCCATGTACAATGAATATC  743

seq1  TGAGAATGAACACATTTTTAAAGGAAGAACTAGAGAGTAGGTAGCTCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATGAACACATTTTTAAAGGAAGAACTAGAGAGTAGGTAGCTCACT  793

seq1  GAAGGAGCTAGAGGCTCAACTACATCCTGACAAGAGTCCCTGGCCCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCTAGAGGCTCAACTACATCCTGACAAGAGTCCCTGGCCCCAGG  843

seq1  ACCCTGCCTCTACCTCTAGGGGTTCTAAGAGTGGCTTTTAAAAAAACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCTCTACCTCTAGGGGTTCTAAGAGTGGCTTTTAAAAAAACTGT  893

seq1  GTCTTGCAAACTTAAAATACTTTTAAAACAATGAATCAACTTCATCCAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAAACTTAAAATACTTTTAAAACAATGAATCAACTTCATCCAAA  943

seq1  CCATCTCACTATACCCCAGCTGTGCCGAATTATCTGAAACCAATCTAGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCACTATACCCCAGCTGTGCCGAATTATCTGAAACCAATCTAGAG  993

seq1  TGAATTC  1007
      |||||||
seq2  TGAATTC  1000

seq1: chrX_100263961_100264034
seq2: B6Ng01-031C06.g_212_256 (reverse)

seq1  CACACACACACACACACACACACAGCACATCCCTGCCTCCACCACCACCA  50
      ||||||||||||||||||||||||                  ||||||| 
seq2  CACACACACACACACACACACACA------------------CACCACCT  32

seq1  CTGCCACCCAGGAAAGCAGGAGTC  74
      |           ||||||||||||
seq2  C-----------AAAGCAGGAGTC  45