BAC Information

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BAC

Clone NameB6Ng01-031D12
Chromosome15 (Build37)
Map Location 73,783,520 - 73,892,487
singlet/doubletdoublet
Overlap geneLOC100040966
Upstream gene1810044A24Rik, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929, Dennd3, Slc45a4, Gpr20, LOC100040946, pPtp4a3, Gm628, LOC100041273, EG625276
Downstream geneEG666113, LOC100041307, LOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031D12.bB6Ng01-031D12.g
ACCDH860899DH860900
length1,156769
definitionDH860899|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D12, 5' end.DH860900|Mus musculus domesticus DNA, BAC clone: B6Ng01-031D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,783,520 - 73,784,712)(73,891,723 - 73,892,487)
sequence
gaattccatctggattagcgttaagtatattaaaaaaaaatagggaccca
gaaaagtgagaattaagtagaatttaatattcatccagcctcgggagaga
gcagctttcctaagtttagaactaatacaaggaatcaggagagaaaatat
ggacaggcttggctgagtcggaatgaaaatcttctgcatgtcagatgaaa
ctgccaaagccaaaggccctggctgagcagcctggaaaagacatcagcgg
caagtgtgacaggagaggcttaatttctttattaaagaaagagcttctcg
actttctctgaggattgtgggagaacgcacgaggctgtggagttgaggct
gttttttcagagaggaaggtcacttagggaaggtcctcaccagtccccta
aggcaggcagagcttgaggtggcaagactaacagtgctttgttattcatt
cattcattcattcattcattcacttactattttatttacttatttttttt
tactttaaaattattgcttaaattattattttaaaatttgtatggtgttt
tggatgcatacctgtcagtgtaccatgtgtgtgcttgattcctgtggagg
tcaaaagattgagttggatcccctggaactggtgccacagacagttgtga
gctgccatgtaggtactgggaattgaaccctcattctctggaagaatagc
cagtgttcttaaccactgaaacatccctccagcctcaatatatatatata
catattaaatgtggattttcttcagtgattatgttttgcttttaaacaga
aaggaaggctgggcgtggtggcgtacgcctttaatcccagcactcagagc
cagaggcaggtggatttctgagttcaaggccagcctggtctacaaagtga
gttccaggacagtcagagctatacagaaaaccctgtcttgaaaccctccc
caccaaaaaaaaaaaaaaaaaacaaaacaaacataacagagaaatataac
agtatgtgtccatagtatctgcgacccgtattattgactctagtgcatgt
catcccccactgtgcagcagtagttctgtgcatctcacattacatgtgca
caatgcatttcctttccatggctggcattgctacttctcataagaataac
tgaggt
gaattccttgtgacagggccagtgcagcctgagtggctgtaaataaatgg
tgttagcatggatgtgacccaaatctaaaggcgacattcgtgctctgcag
agctgtcacagattgaataagaaaagtggagggaaagaagcagagtccct
atgccagagaatttcacatgcttccatgtttcctgcagcccaagcaggtg
atctactcctcaagtgtaggggggtggggaggcaggtctgaactgggggc
aaagaaagggagggagcgtggctttacagcaataaacaccagcacaaccc
aagaaccaagggcaaccccaccagccaatggcttcttgcgagtatgaggt
ttgaacatgtattcccaaagtcatatgctgattcccaggcccccggggat
gggggcacaatttctctcttgactctcctgaggttgagggctcatagcca
ctccaccaagaattcaagtgcacgaattcaaacctttacctcaacgcgtg
tcacggaaggcaaagaagaaatgatctgcaagataaaattagatgtctat
ctcacagcaaacacagaaaataaattccagatggacggaaaacttgtacg
tgaaatgcaaaactgtaaaggcattctgtgaaaagctgggagaatgtttc
ccacatttatctcaagaggggcatgacaataagacagaatggtttcaaaa
gctgagtaggggtggtgccaggggcaggatgaaacaggtggtacacaggt
ggggagtggagtggcccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_73783520_73784712
seq2: B6Ng01-031D12.b_46_1201

seq1  GAATTCCATCTGGATTAGCGTTAAGTATATTAAAAAAAAATAGGGACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTGGATTAGCGTTAAGTATATTAAAAAAAAATAGGGACCCA  50

seq1  GAAAAGTGAGAATTAAGTAGAATTTAATATTCATCCAGCCTCGGGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGAGAATTAAGTAGAATTTAATATTCATCCAGCCTCGGGAGAGA  100

seq1  GCAGCTTTCCTAAGTTTAGAACTAATACAAGGAATCAGGAGAGAAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTTTCCTAAGTTTAGAACTAATACAAGGAATCAGGAGAGAAAATAT  150

seq1  GGACAGGCTTGGCTGAGTCGGAATGAAAATCTTCTGCATGTCAGATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGCTTGGCTGAGTCGGAATGAAAATCTTCTGCATGTCAGATGAAA  200

seq1  CTGCCAAAGCCAAAGGCCCTGGCTGAGCAGCCTGGAAAAGACATCAGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAGCCAAAGGCCCTGGCTGAGCAGCCTGGAAAAGACATCAGCGG  250

seq1  CAAGTGTGACAGGAGAGGCTTAATTTCTTTATTAAAGAAAGAGCTTCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGACAGGAGAGGCTTAATTTCTTTATTAAAGAAAGAGCTTCTCG  300

seq1  ACTTTCTCTGAGGATTGTGGGAGAACGCACGAGGCTGTGGAGTTGAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTGAGGATTGTGGGAGAACGCACGAGGCTGTGGAGTTGAGGCT  350

seq1  GTTTTTTCAGAGAGGAAGGTCACTTAGGGAAGGTCCTCACCAGTCCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTCAGAGAGGAAGGTCACTTAGGGAAGGTCCTCACCAGTCCCCTA  400

seq1  AGGCAGGCAGAGCTTGAGGTGGCAAGACTAACAGTGCTTTGTTATTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGAGCTTGAGGTGGCAAGACTAACAGTGCTTTGTTATTCATT  450

seq1  CATTCATTCATTCATTCATTCACTTACTATTTTATTTACTTATTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTCATTCATTCATTCACTTACTATTTTATTTACTTATTTTTTTT  500

seq1  TACTTTAAAATTATTGCTTAAATTATTATTTTAAAATTTGTATGGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTAAAATTATTGCTTAAATTATTATTTTAAAATTTGTATGGTGTTT  550

seq1  TGGATGCATACCTGTCAGTGTACCATGTGTGTGCTTGATTCCTGTGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCATACCTGTCAGTGTACCATGTGTGTGCTTGATTCCTGTGGAGG  600

seq1  TCAAAAGATTGAGTTGGATCCCCTGGAACTGGTGCCACAGACAGTTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGATTGAGTTGGATCCCCTGGAACTGGTGCCACAGACAGTTGTGA  650

seq1  GCTGCCATGTAGGTACTGGGAATTGAACCCTCATTCTCTGGAAGAATAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGTAGGTACTGGGAATTGAACCCTCATTCTCTGGAAGAATAGC  700

seq1  CAGTGTTCTTAACCACTGAAACATCCCTCCAGCCTCAATATATATATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTTCTTAACCACTGAAACATCCCTCCAGCCTCAATATATATATATA  750

seq1  CATATTAAATGTGGATTTTCTTCAGTGATTATGTTTTGCTTTTAAAACAG  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATATTAAATGTGGATTTTCTTCAGTGATTATGTTTTGCTTTT-AAACAG  799

seq1  AAAGGAAGGCTGGGCGTGGTGGCGTACGCCTTTAATCCCAGCACTCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAAGGAAGGCTGGGCGTGGTGGCGTACGCCTTTAATCCCAGCACTCA-GA  848

seq1  GCCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGT  898

seq1  GAGTTCCAGGACAGTCAGAGCTATACAGAAAAACCCTGTCTTGAAACCCT  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAGTTCCAGGACAGTCAGAGCTATACAG-AAAACCCTGTCTTGAAACCCT  947

seq1  CCCCACCAAAAAAAAAAAAAAAAAAAACAAAAACAAAAACAAAAACAGGA  1000
      |||||||||||||||||||||||||    ||||||||    | |||||  
seq2  CCCCACCAAAAAAAAAAAAAAAAAA---CAAAACAAA---CATAACAG--  989

seq1  AGGAAAATATAAACAGTATGTGTTCAATAGTATCTGCGACCCGTTATTAT  1050
      ||  |||||| ||||||||||| || ||||||||||||||||| ||||||
seq2  AG--AAATAT-AACAGTATGTG-TCCATAGTATCTGCGACCCG-TATTAT  1034

seq1  TGACTTCCTAAGTGCCATGGTCATCCCACACTGTGCAGCAAGTAGTTCTG  1100
      |||||  || |||| ||| |||||||| ||||||||||| ||||||||||
seq2  TGACT--CT-AGTG-CAT-GTCATCCCCCACTGTGCAGC-AGTAGTTCTG  1078

seq1  TGCATCTGCACATTTAACCATGTGCACACATGCATTTCCCTTTCCATGGC  1150
      ||||||| ||||||    |||||||||| |||||||| ||||||||||||
seq2  TGCATCT-CACATT---ACATGTGCACA-ATGCATTT-CCTTTCCATGGC  1122

seq1  TGCATTTGCTATCTTTCTCATATTAAAGATAAAAAACTGAGGT  1193
      ||   ||||||   |||||||    |||   || |||||||||
seq2  TGGCATTGCTA--CTTCTCAT----AAG---AATAACTGAGGT  1156

seq1: chr15_73891723_73892487
seq2: B6Ng01-031D12.g_68_836 (reverse)

seq1  GTGGACCACTCCACTCCCCACCTGTGTACCACCTGCTTCATCCTGCCCCT  50
      |||| |||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGGGCCACTCCACTCCCCACCTGTGTACCACCTGTTTCATCCTGCCCCT  50

seq1  GGCACCACCCCTACTCAGCTTTTGAAACCATTCTGTC-TATTGTCATGCC  99
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGCACCACCCCTACTCAGCTTTTGAAACCATTCTGTCTTATTGTCATGCC  100

seq1  CCTCTTGAGAT-AATGTGGGAAACATTCTCCCAGCTTTTCACAGAATGCC  148
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGAGATAAATGTGGGAAACATTCTCCCAGCTTTTCACAGAATGCC  150

seq1  -TTACAGTTTTGCATTTCACGTACAAGTTTTCCGTCCATCTGGAATTTA-  196
       |||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTACAGTTTTGCATTTCACGTACAAGTTTTCCGTCCATCTGGAATTTAT  200

seq1  TTTCTGTGTTTGCTGTGAGATAGACATCTAATTTTATCTTGCAGATCATT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTTTGCTGTGAGATAGACATCTAATTTTATCTTGCAGATCATT  250

seq1  TCTTCTTTGCCTTCCGTGACACGCGTTGAGGTAAAGGTTTGAATTCGTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTGCCTTCCGTGACACGCGTTGAGGTAAAGGTTTGAATTCGTGC  300

seq1  ACTTGAATTCTTGGTGGAGTGGCTATGAGCCCTCAACCTCAGGAGAGTCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATTCTTGGTGGAGTGGCTATGAGCCCTCAACCTCAGGAGAGTCA  350

seq1  AGAGAGAAATTGTGCCCCCATCCCCGGGGGCCTGGGAATCAGCATATGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAATTGTGCCCCCATCCCCGGGGGCCTGGGAATCAGCATATGAC  400

seq1  TTTGGGAATACATGTTCAAACCTCATACTCGCAAGAAGCCATTGGCTGGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAATACATGTTCAAACCTCATACTCGCAAGAAGCCATTGGCTGGT  450

seq1  GGGGTTGCCCTTGGTTCTTGGGTTGTGCTGGTGTTTATTGCTGTAAAGCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGCCCTTGGTTCTTGGGTTGTGCTGGTGTTTATTGCTGTAAAGCC  500

seq1  ACGCTCCCTCCCTTTCTTTGCCCCCAGTTCAGACCTGCCTCCCCACCCCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTCCCTCCCTTTCTTTGCCCCCAGTTCAGACCTGCCTCCCCACCCCC  550

seq1  CTACACTTGAGGAGTAGATCACCTGCTTGGGCTGCAGGAAACATGGAAGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTTGAGGAGTAGATCACCTGCTTGGGCTGCAGGAAACATGGAAGC  600

seq1  ATGTGAAATTCTCTGGCATAGGGACTCTGCTTCTTTCCCTCCACTTTTCT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAATTCTCTGGCATAGGGACTCTGCTTCTTTCCCTCCACTTTTCT  650

seq1  TATTCAATCTGTGACAGCTCTGCAGAGCACGAATGTCGCCTTTAGATTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATCTGTGACAGCTCTGCAGAGCACGAATGTCGCCTTTAGATTTG  700

seq1  GGTCACATCCATGCTAACACCATTTATTTACAGCCACTCAGGCTGCACTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATCCATGCTAACACCATTTATTTACAGCCACTCAGGCTGCACTG  750

seq1  GCCCTGTCACAAGGAATTC  765
      |||||||||||||||||||
seq2  GCCCTGTCACAAGGAATTC  769