BAC Information

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BAC

Clone NameB6Ng01-031I10
Chromosome15 (Build37)
Map Location 59,996,085 - 60,162,755
singlet/doubletdoublet
Overlap geneLOC623048
Upstream geneEG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266
Downstream geneLOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031I10.bB6Ng01-031I10.g
ACCDH861112DH861113
length3061,017
definitionDH861112|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I10, 5' end.DH861113|Mus musculus domesticus DNA, BAC clone: B6Ng01-031I10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,162,450 - 60,162,755)(59,996,085 - 59,997,094)
sequence
ctccatagctactaaagtggcttgtgagtctcacaaggtgctctactgga
acacagggagaggacatgaagagtagtgaacagggaaactttgaaaagga
aagttgcagaatggtctgacttgcaaatagcttggtgctgagtctggctg
cctggagacaagaggatggacagcatacagcagcagagaaagaacacagt
acagttttgcatgcttgcttgacggtagtcttcgtcttgccagataaggt
attcaacagcattaagctgtatgtggagtgtgtgtgtgtgtgtgtgtgtg
tgtgtg
gaattctcatcaactctgaaccattatttaaaaaaaaaaaaaaaaccaat
cttatctttagcagtatgttagaatgaaggctgttccatctctcatgtga
gtggctaagcttggtctatgtggggatgaagctttccacagctagacaaa
aaagaaggcgagaattcaggaggccccacccctcagtactgaattatttc
ctattcttgatgtggggcaagaaggcatcattcctttcagtttgtaactg
ctcatggctccatcaggctctgatcgatagtcttaattcagtgatcacat
agattattctgattaaacccaggggatggtacaaaatgtcaaaaatcttg
caaagagactggggggtgagaggaactgtggcaatgtgtgggggtttcat
ctaagaactaatttaactaatttaacaatcaaacaaacaaaaagagtctc
atcatgaccaaatttcaaacattggtcagcctcctttgggctttcttcat
actgggctttagccttggtatacccattctgtgttagcaatgaatctcgg
tgaaagagtcaccaaaagcaatctctcatcatgataaattcccactcttg
aggcttgatgctttatcagcctccctagtctttacccctggtacttgggt
tttcagtgttcttttagcaaataactttttttcattaattaataaattta
tttactttacatcccaatttgcagcttccctctcttctctcctcccagac
cctcccacttccccttctgctcagaaaaggagaggtcttccatggaacat
caacctgccttggcacatcaacttgcattgggaaagaggtgcatccctct
cctttctagacaaggcagccccagttatgggaagagtgatgggcaggcaa
cagcttcagaagacagtacttgctcctgctgtttagtctcacattgaaga
cccggttgcactattgttacgtacatgctaaggcccaggttctgtcccat
gcatgctttttggtcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_60162450_60162755
seq2: B6Ng01-031I10.b_52_357 (reverse)

seq1  CACACACACACACACACACACACACACACTCCACATACAGCTTAATGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACTCCACATACAGCTTAATGCTG  50

seq1  TTGAATACCTTATCTGGCAAGACGAAGACTACCGTCAAGCAAGCATGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACCTTATCTGGCAAGACGAAGACTACCGTCAAGCAAGCATGCAA  100

seq1  AACTGTACTGTGTTCTTTCTCTGCTGCTGTATGCTGTCCATCCTCTTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACTGTGTTCTTTCTCTGCTGCTGTATGCTGTCCATCCTCTTGTC  150

seq1  TCCAGGCAGCCAGACTCAGCACCAAGCTATTTGCAAGTCAGACCATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGCCAGACTCAGCACCAAGCTATTTGCAAGTCAGACCATTCTG  200

seq1  CAACTTTCCTTTTCAAAGTTTCCCTGTTCACTACTCTTCATGTCCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCCTTTTCAAAGTTTCCCTGTTCACTACTCTTCATGTCCTCTCC  250

seq1  CTGTGTTCCAGTAGAGCACCTTGTGAGACTCACAAGCCACTTTAGTAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTCCAGTAGAGCACCTTGTGAGACTCACAAGCCACTTTAGTAGCT  300

seq1  ATGGAG  306
      ||||||
seq2  ATGGAG  306

seq1: chr15_59996085_59997094
seq2: B6Ng01-031I10.g_68_1084

seq1  GAATTCTCATCAACTCTGAACCATTATTTAAAAAAAAAAAAAAAACCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCAACTCTGAACCATTATTTAAAAAAAAAAAAAAAACCAAT  50

seq1  CTTATCTTTAGCAGTATGTTAGAATGAAGGCTGTTCCATCTCTCATGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTTAGCAGTATGTTAGAATGAAGGCTGTTCCATCTCTCATGTGA  100

seq1  GTGGCTAAGCTTGGTCTATGTGGGGATGAAGCTTTCCACAGCTAGACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAAGCTTGGTCTATGTGGGGATGAAGCTTTCCACAGCTAGACAAA  150

seq1  AAAGAAGGCGAGAATTCAGGAGGCCCCACCCCTCAGTACTGAATTATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGCGAGAATTCAGGAGGCCCCACCCCTCAGTACTGAATTATTTC  200

seq1  CTATTCTTGATGTGGGGCAAGAAGGCATCATTCCTTTCAGTTTGTAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTTGATGTGGGGCAAGAAGGCATCATTCCTTTCAGTTTGTAACTG  250

seq1  CTCATGGCTCCATCAGGCTCTGATCGATAGTCTTAATTCAGTGATCACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGCTCCATCAGGCTCTGATCGATAGTCTTAATTCAGTGATCACAT  300

seq1  AGATTATTCTGATTAAACCCAGGGGATGGTACAAAATGTCAAAAATCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTCTGATTAAACCCAGGGGATGGTACAAAATGTCAAAAATCTTG  350

seq1  CAAAGAGACTGGGGGGTGAGAGGAACTGTGGCAATGTGTGGGGGTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGACTGGGGGGTGAGAGGAACTGTGGCAATGTGTGGGGGTTTCAT  400

seq1  CTAAGAACTAATTTAACTAATTTAACAATCAAACAAACAAAAAGAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAACTAATTTAACTAATTTAACAATCAAACAAACAAAAAGAGTCTC  450

seq1  ATCATGACCAAATTTCAAACATTGGTCAGCCTCCTTTGGGCTTTCTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGACCAAATTTCAAACATTGGTCAGCCTCCTTTGGGCTTTCTTCAT  500

seq1  ACTGGGCTTTAGCCTTGGTATACCCATTCTGTGTTAGCAATGAATCTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTTTAGCCTTGGTATACCCATTCTGTGTTAGCAATGAATCTCGG  550

seq1  TGAAAGAGTCACCAAAAGCAATCTCTCATCATGATAAATTCCCACTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGTCACCAAAAGCAATCTCTCATCATGATAAATTCCCACTCTTG  600

seq1  AGGCTTGATGCTTTATCAGCCTCCCTAGTCTTTACCCCTGGTACTTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTGATGCTTTATCAGCCTCCCTAGTCTTTACCCCTGGTACTTGGGT  650

seq1  TTTCAGTGTTCTTTTAGCAAATAAC-TTTTTTCATTAATTAATAAATTTA  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTCAGTGTTCTTTTAGCAAATAACTTTTTTTCATTAATTAATAAATTTA  700

seq1  TTTACTTTACATCCCAA-TTGCAGCTTCCCTCTCTTCTCTCCTCCCAGAC  748
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTACTTTACATCCCAATTTGCAGCTTCCCTCTCTTCTCTCCTCCCAGAC  750

seq1  CCTCCCACTTCCCCTTCTGCTCAGGAAAGGAGAGGTCTCCCATGG-ACAT  797
      |||||||||||||||||||||||| ||||||||||||| |||||| ||||
seq2  CCTCCCACTTCCCCTTCTGCTCAGAAAAGGAGAGGTCTTCCATGGAACAT  800

seq1  CAACCTGCCTTGGCACATCAACTTGCATTGGG-AAGAGGTGCAT-CCTCT  845
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  CAACCTGCCTTGGCACATCAACTTGCATTGGGAAAGAGGTGCATCCCTCT  850

seq1  CCTATCTAGACAAGGCAG-CCCAGTTAGGGGAA-AGGGAT-GGCAGGCAA  892
      ||| |||||||||||||| |||||||| ||||| || ||| |||||||||
seq2  CCTTTCTAGACAAGGCAGCCCCAGTTATGGGAAGAGTGATGGGCAGGCAA  900

seq1  CAGCGTCAG-AGACAGTACTTGCTCCTGCTGTTAAAGATCTCACATTGAA  941
      |||| |||| ||||||||||||||||||||||| |   ||||||||||||
seq2  CAGCTTCAGAAGACAGTACTTGCTCCTGCTGTTTA--GTCTCACATTGAA  948

seq1  GACCCGGTTGCACAACTGTTACGTACATGCAGAGGGCCCAGG-TCTGTCC  990
      ||||||||||||| | ||||||||||||||  | |||||||| |||||||
seq2  GACCCGGTTGCACTATTGTTACGTACATGC-TAAGGCCCAGGTTCTGTCC  997

seq1  CATGCATGCTTTTTGGTCGG  1010
      ||||||||||||||||||||
seq2  CATGCATGCTTTTTGGTCGG  1017