BAC Information

Click to search

BAC

Clone NameB6Ng01-031J19
Chromosome15 (Build37)
Map Location 13,742,591 - 13,871,555
singlet/doubletdoublet
Overlap geneLOC666708
Upstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
Downstream geneLOC674819, LOC100040024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031J19.bB6Ng01-031J19.g
ACCDH861174DH861175
length9521,109
definitionDH861174|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J19, 5' end.DH861175|Mus musculus domesticus DNA, BAC clone: B6Ng01-031J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,742,591 - 13,743,384)(13,870,432 - 13,871,555)
sequence
gaattcataacaggaatttcaaatggtgagaaacacctaaagaaatgtgc
aaagtccttagtgatcagagaaatgcaaatcaaaacgaccctgagattcc
accttacatgaatcagaatggctaagatcaaaacctcaggtgacagtgca
tgttagcaaggatgtggagaaagagcaacactcctccattgctggtggga
ttgcaaactggtacaaccagtctgcaaatcaatttggaggttcctcagaa
aattggaaagagatctaactgaactcccagcaataccactcttgggaata
tacccaaaagatgccccaccatgccacagggactccactatgttcataga
agccttgtttgtgatagccaggagctggatacaacccaaatatcccacaa
cacaagaatggatatagaaaatgtagtttatttacacaatgaaatactac
tcagctattaagaatgagtatatcctgagttttgcaggcaaatggatgga
actagaaaatatcatcctgagtgaggtaactcagacccaaaaggacatgc
atggtatgaatgtactcactaataagtggatattagccaaaaaaaaaatt
gctgaatacccaagatacagccaacagaactcaaaaagttcaacaaggtg
aagggctatgtggtgtgggagggtatcaggccccagattgggcatctttt
ctttatgttaggaaaatattctcatatgattttctgaaaatattttcttg
atatttgagctaaaaatcatctctattacttttattattagatcttttct
tttgggtgtgcctcaaattccctggatattttgtgttataaactttttta
gatttaccttttttaacttatgtatccatttcttttatcacatcttttaa
tgtctgagataatgttttgttttcgtttttgttggtcggttgttttgttt
tt
gaattcaaaagatgaagaggggcagggaatgcaatatggagtataaaaaa
tgaattacaaataaaattaaattaggaaataatgtaaaaatgaaatgtaa
ataaataaaacaaccaattaaataatgtatattctgtgacatttgatggc
tcacagcttatatctgacactctgaaggttgaggcaggtagatctctcga
ttagtttgagtccagtcttgtctccgcagcaattacaaggttacccagat
agacatcatgagatcactcttgctaaaaaaaaaaatgcatatcgttaaaa
cacagtatttcataaaaatctgcaaaagttcatgcctacaaaatgaaaga
tcaaaatatgtaaaatgttaatagaaacattattcttagacaaaagctaa
atagcatactaaataactgtcaatcacaacatgaatgaatcaatacagtt
gaagactctctgtaacagaatatgatcaaagaattgccacatgaaagaac
atggatacatttctcaaatgtcttgttagaagaaaataagagaaaactac
tgtgaactccaaggggatggataaacattctctacctttaacacttagca
tttacactgcttcactcgctacttcggaagttctatgtagaaactcactg
tgtatgagtgaagtataaatctaattaaatttctatgcctgataattaaa
agtgatgatattttccccaaatatacactgctacttgattggtctcaaaa
attcttcagtaacatataaattacaaaataatctactattattaatgaac
gagtgttttataagctttctgtcaaaggataagttatgtagtcaaaattg
tctcccataaacaacccaaaccgcacaacttgatgagttagcagaagtca
aatgtgtctgtgattctgccactcagcagtttgaatacattatcactttc
agtgtcctcagaagataaagcagatcttgacctttcccactggtttgtgt
tgcctcttctgattatataaaaccaatcatatgccatcaatcaggtgctc
tttgactgtgcctccccaccaccagaatatagccaatgccatgttcaagg
tttgttcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13742591_13743384
seq2: B6Ng01-031J19.b_209_1001

seq1  GGATGTGGAGAAAGAGCAACACTCCTCCATTGCTGGTGGGATTGCAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGAGAAAGAGCAACACTCCTCCATTGCTGGTGGGATTGCAAACT  50

seq1  GGTACAACCAGTCTGCAAATCAATTTGGAGGTTCCTCAGAAAATTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAACCAGTCTGCAAATCAATTTGGAGGTTCCTCAGAAAATTGGAAA  100

seq1  GAGATCTAACTGAACTCCCAGCAATACCACTCTTGGGAATATACCCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTAACTGAACTCCCAGCAATACCACTCTTGGGAATATACCCAAAA  150

seq1  GATGCCCCACCATGCCACAGGGACTCCACTATGTTCATAGAAGCCTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCCCACCATGCCACAGGGACTCCACTATGTTCATAGAAGCCTTGTT  200

seq1  TGTGATAGCCAGGAGCTGGATACAACCCAAATATCCCACAACACAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATAGCCAGGAGCTGGATACAACCCAAATATCCCACAACACAAGAAT  250

seq1  GGATATAGAAAATGTAGTTTATTTACACAATGAAATACTACTCAGCTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATAGAAAATGTAGTTTATTTACACAATGAAATACTACTCAGCTATT  300

seq1  AAGAATGAGTATATCCTGAGTTTTGCAGGCAAATGGATGGAACTAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAGTATATCCTGAGTTTTGCAGGCAAATGGATGGAACTAGAAAA  350

seq1  TATCATCCTGAGTGAGGTAACTCAGACCCAAAAGGACATGCATGGTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCCTGAGTGAGGTAACTCAGACCCAAAAGGACATGCATGGTATGA  400

seq1  ATGTACTCACTAATAAGTGGATATTAGCCAAAAAAAAAATTGCTGAATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTCACTAATAAGTGGATATTAGCCAAAAAAAAAATTGCTGAATAC  450

seq1  CCAAGATACAGCCAACAGAACTCAAAAAGTTCAACAAGGTGAAGGGCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATACAGCCAACAGAACTCAAAAAGTTCAACAAGGTGAAGGGCTAT  500

seq1  GTGGTGTGGGAGGGTATCAGGCCCCAGATTGGGCATCTTTTCTTTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGTGGGAGGGTATCAGGCCCCAGATTGGGCATCTTTTCTTTATGTT  550

seq1  AGGAAAATATTCTCATATGATTTTCTGAAAATATTTTCTTGATATTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATATTCTCATATGATTTTCTGAAAATATTTTCTTGATATTTGAG  600

seq1  CTAAAAATCATCTCTATTACTTTTATTATTAGATCTTTTCTTTTGGTTGT  650
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAAAAATCATCTCTATTACTTTTATTATTAGATCTTTTCTTTTGGGTGT  650

seq1  GCCTCAAAATTCCTGGATATTTTGTGTTATAAACTTTTTTAGATTTAACC  700
      |||||||| | ||||||||||||||||||||||||||||||||||| |||
seq2  GCCTCAAATTCCCTGGATATTTTGTGTTATAAACTTTTTTAGATTT-ACC  699

seq1  TTTTTTAACTTATGTATCCATTTCTTTTATCACATCTTTT-ATGTCTGAG  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTTAACTTATGTATCCATTTCTTTTATCACATCTTTTAATGTCTGAG  749

seq1  ATAATTTTTTTTGTTTTTTGTTTTTTTGTTTGTTTG-TTTGTTTTT  794
      ||||  | |||||||||   |||| ||| | | ||| |||||||||
seq2  ATAA--TGTTTTGTTTTCGTTTTTGTTGGTCGGTTGTTTTGTTTTT  793

seq1: chr15_13870432_13871555
seq2: B6Ng01-031J19.g_66_1174 (reverse)

seq1  AGGAACAACACCTTGACAGTGGCCATTGCCTATAATTCTTGTGGTGGGGA  50
      |||||||| |||||||   ||| ||||| |||| ||||| ||||||||||
seq2  AGGAACAA-ACCTTGAACATGG-CATTGGCTAT-ATTCTGGTGGTGGGGA  47

seq1  GGCACAGTCAAAGAGCACCTGAATTTGATGGCCAATATGATTGGTTTTAT  100
      ||||||||||||||||||||||  ||||||||  ||||||||||||||||
seq2  GGCACAGTCAAAGAGCACCTGA--TTGATGGC--ATATGATTGGTTTTAT  93

seq1  ATATATACAGAAGAGCAAACACAAAACACAGTGGGAAAGGTCAAGATCTG  150
      ||| || ||||||||  ||||||||   ||||||||||||||||||||||
seq2  ATA-AT-CAGAAGAGGCAACACAAA--CCAGTGGGAAAGGTCAAGATCTG  139

seq1  CTTTATCTTCTGAGGACACTGAAAGTGATAATGTAATTCAAACCTGCTGA  200
      |||||||||||||||||||||||||||||||||| ||||||| |||||||
seq2  CTTTATCTTCTGAGGACACTGAAAGTGATAATGT-ATTCAAA-CTGCTGA  187

seq1  GTGGCAGATTCACAGACACATTTGACTTCTGCTAACTCATCAAGTTGTGC  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAGAATCACAGACACATTTGACTTCTGCTAACTCATCAAGTTGTGC  237

seq1  GGTTTGGGTTTGTTTATGAGAAGACAATTTTGACTACATAACTTATCCTT  300
      |||||||| ||||||||| | |||||||||||||||||||||||||||||
seq2  GGTTTGGG-TTGTTTATG-GGAGACAATTTTGACTACATAACTTATCCTT  285

seq1  TGACAGAAAGCTTATAAAACACTCGTTCATTAATAATAGTAGATTATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAAGCTTATAAAACACTCGTTCATTAATAATAGTAGATTATTTT  335

seq1  GTAATTTATATGTTACTGAAGAATTTTTGAGACCAATCAAGTAGCAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTATATGTTACTGAAGAATTTTTGAGACCAATCAAGTAGCAGTGT  385

seq1  ATATTTGGGGAAAATATCATCACTTTTAATTATCAGGCATAGAAATTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGGGAAAATATCATCACTTTTAATTATCAGGCATAGAAATTTAA  435

seq1  TTAGATTTATACTTCACTCATACACAGTGAGTTTCTACATAGAACTTCCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTATACTTCACTCATACACAGTGAGTTTCTACATAGAACTTCCG  485

seq1  AAGTAGCGAGTGAAGCAGTGTAAATGCTAAGTGTTAAAGGTAGAGAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCGAGTGAAGCAGTGTAAATGCTAAGTGTTAAAGGTAGAGAATGT  535

seq1  TTATCCATCCCCTTGGAGTTCACAGTAGTTTTCTCTTATTTTCTTCTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATCCCCTTGGAGTTCACAGTAGTTTTCTCTTATTTTCTTCTAAC  585

seq1  AAGACATTTGAGAAATGTATCCATGTTCTTTCATGTGGCAATTCTTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTGAGAAATGTATCCATGTTCTTTCATGTGGCAATTCTTTGAT  635

seq1  CATATTCTGTTACAGAGAGTCTTCAACTGTATTGATTCATTCATGTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTGTTACAGAGAGTCTTCAACTGTATTGATTCATTCATGTTGTG  685

seq1  ATTGACAGTTATTTAGTATGCTATTTAGCTTTTGTCTAAGAATAATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGTTATTTAGTATGCTATTTAGCTTTTGTCTAAGAATAATGTTT  735

seq1  CTATTAACATTTTACATATTTTGATCTTTCATTTTGTAGGCATGAACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAACATTTTACATATTTTGATCTTTCATTTTGTAGGCATGAACTTT  785

seq1  TGCAGATTTTTATGAAATACTGTGTTTTAACGATATGCATTTTTTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATTTTTATGAAATACTGTGTTTTAACGATATGCATTTTTTTTTTT  835

seq1  AGCAAGAGTGATCTCATGATGTCTATCTGGGTAACCTTGTAATTGCTGCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGTGATCTCATGATGTCTATCTGGGTAACCTTGTAATTGCTGCG  885

seq1  GAGACAAGACTGGACTCAAACTAATCGAGAGATCTACCTGCCTCAACCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGACTGGACTCAAACTAATCGAGAGATCTACCTGCCTCAACCTT  935

seq1  CAGAGTGTCAGATATAAGCTGTGAGCCATCAAATGTCACAGAATATACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTCAGATATAAGCTGTGAGCCATCAAATGTCACAGAATATACAT  985

seq1  TATTTAATTGGTTGTTTTATTTATTTACATTTCATTTTTACATTATTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATTGGTTGTTTTATTTATTTACATTTCATTTTTACATTATTTCC  1035

seq1  TAATTTAATTTTATTTGTAATTCATTTTTTATACTCCATATTGCATTCCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATTTTATTTGTAATTCATTTTTTATACTCCATATTGCATTCCC  1085

seq1  TGCCCCTCTTCATCTTTTGAATTC  1124
      ||||||||||||||||||||||||
seq2  TGCCCCTCTTCATCTTTTGAATTC  1109