BAC Information

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BAC

Clone NameB6Ng01-033C20
Chromosome15 (Build37)
Map Location 100,277,098 - 100,412,765
singlet/doubletdoublet
Overlap geneLetmd1, BC035295, Tcfcp2, Pou6f1
Upstream geneC230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982
Downstream geneDazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033C20.bB6Ng01-033C20.g
ACCDH862306DH862307
length757569
definitionDH862306|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C20, 5' end.DH862307|Mus musculus domesticus DNA, BAC clone: B6Ng01-033C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,277,098 - 100,277,855)(100,412,191 - 100,412,765)
sequence
gaattccaggacagtcagggctacacagagaaaccctgtttcaaaaaaac
caaaatagattagatagatagatagatagatagatagatagatagataga
tagataactaggttaaacaaattaaacaaatggggggttttaaaaatatt
ttctgagctgggctgtggtcgcgcacacctttaatcccagcacttgggag
gcagaggcaggcggatttctgagttctaggccagcctggtccacaaaatg
agtttcaggacagccagggctatacagagaaaccctgtcttgaaaatcca
caaaaaaaaaaaaaaaaaaaaaaaaaaaagttctgagttttcccattctt
ttctttcttgtcagggtttcatatagtgcaggctagcattgtactctgag
tctcctacttccactttggaggtcaggggttacaggtttacatcatccca
acaggcttgtggttagctctggttagaaagccgctgatagttgaggcttc
ctggaaagctgaggtgcccccagatgttcacggtcctggtaaaaggcaga
gaggggtatggtgactagggccaaaggctgtggctccagctgaaagcaga
ggggaagaagaacttagttacctgggctcttttctctttgactggggact
cctcactggccaggcaagaggctcagagtttgttaactctttgtgggtca
gagagaaaagaaaaggataggaaagaaaagacgaggaaagaaagaaggaa
aggaagg
caggacagccaaggctacacagagataagggttatagaagttcctactaa
agtagcagatgtctgtaatctcagcctgggctacatagggagttcaattc
cagcctgggttatgggatcctgtcagaaaacagcaacaaaacccctaatt
tagaagtgtatgaatgttacaccatggagctgacacgtgggtatacagtt
agtgtgtgatggtagttagttctgtgctgtcttaggggagctgctggggt
ctccatggctggtaggtgtgtgtatcttgggaagccctgacgtggtggaa
tcaaggactcgtgtctggttaagtcgtcagcttaagttttcccttttttt
tcctctgccatctggggtctcagacatgtatagggtaccatcgctgtgct
attccttcagctttggaagttctagagaaagaccaaggccaatggtctgg
ggaccaaggcgggggggggggcaggtctgagagccatcaggaggcataat
ccatggaagagaaaattccagggaaactcggggagggcatagggtgagga
agatgatgagggctgagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100277098_100277855
seq2: B6Ng01-033C20.b_47_803

seq1  GAATTCCAGGACAGTCAGGGCTACACAGAGAAACCCTGTTTCAAAAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGTCAGGGCTACACAGAGAAACCCTGTTTCAAAAAAAC  50

seq1  CAAAATAGATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGATTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA  100

seq1  TAGATAACTAGGTTAAACAAATTAAACAAATGGGGGGTTTTAAAAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAACTAGGTTAAACAAATTAAACAAATGGGGGGTTTTAAAAATATT  150

seq1  TTCTGAGCTGGGCTGTGGTCGCGCACACCTTTAATCCCAGCACTTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCTGGGCTGTGGTCGCGCACACCTTTAATCCCAGCACTTGGGAG  200

seq1  GCAGAGGCAGGCGGATTTCTGAGTTCTAGGCCAGCCTGGTCCACAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCGGATTTCTGAGTTCTAGGCCAGCCTGGTCCACAAAATG  250

seq1  AGTTTCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAATCCA  300

seq1  CAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCTGAGTTTTCCCATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTTCTGAGTTTTCCCATTCTT  350

seq1  TTCTTTCTTGTCAGGGTTTCATATAGTGCAGGCTAGCATTGTACTCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTGTCAGGGTTTCATATAGTGCAGGCTAGCATTGTACTCTGAG  400

seq1  TCTCCTACTTCCACTTTGGAGGTCAGGGGTTACAGGTTTACATCATCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACTTCCACTTTGGAGGTCAGGGGTTACAGGTTTACATCATCCCA  450

seq1  ACAGGCTTGTGGTTAGCTCTGGTTAGAAAGCCGCTGATAGTTGAGGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTTGTGGTTAGCTCTGGTTAGAAAGCCGCTGATAGTTGAGGCTTC  500

seq1  CTGGAAAGCTGAGGTGCCCCCAGATGTTCACGGTCCTGGTAAAAGGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGCTGAGGTGCCCCCAGATGTTCACGGTCCTGGTAAAAGGCAGA  550

seq1  GAGGGGTATGGTGACTAGGGCCAAAGGCTGTGGCTCCAGCTGAAAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTATGGTGACTAGGGCCAAAGGCTGTGGCTCCAGCTGAAAGCAGA  600

seq1  GGGGAAGAAGAACTTAGTTACCTGGGCTCTTTTCTCTTTGACTGGGGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGAAGAACTTAGTTACCTGGGCTCTTTTCTCTTTGACTGGGGACT  650

seq1  CCTCACTGGCCAGGCAAGAGGCTCAGAGTTTGTTAACTCTTTGTGGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTGGCCAGGCAAGAGGCTCAGAGTTTGTTAACTCTTTGTGGGTCA  700

seq1  GAGAGAAAAGAAAAGGATAGGAAAGAAAAGACGAGGAGAGAAAAGAAGGA  750
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  GAGAGAAAAGAAAAGGATAGGAAAGAAAAGACGAGGAAAG-AAAGAAGGA  749

seq1  AAGGAAGG  758
      ||||||||
seq2  AAGGAAGG  757

seq1: chr15_100412191_100412765
seq2: B6Ng01-033C20.g_67_641 (reverse)

seq1  GGCTCTGCCCTCCTCATCGTCCTCACCCTCTGCCCTCCCCGAGTTTCCCT  50
      ||||| |||||| ||||| |||||||||| ||||||||||||||||||||
seq2  GGCTCAGCCCTCATCATCTTCCTCACCCTATGCCCTCCCCGAGTTTCCCT  50

seq1  GGATTTTTCTCTTCCCTGGATTCTGCCTCCTGCTGGCTCTCAGACCTGCC  100
      ||| ||||||||||| |||||| ||||||||| |||||||||||||||||
seq2  GGAATTTTCTCTTCCATGGATTATGCCTCCTGATGGCTCTCAGACCTGCC  100

seq1  CCCCCCCCCGCCTTGGTCCCCAGACCATTGGCCTTGGTCTTTCTCTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCGCCTTGGTCCCCAGACCATTGGCCTTGGTCTTTCTCTAGAA  150

seq1  CTTCCAAAGCTGAAGGAATAGCACAGCGATGGTACCCTATACATGTCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAAGCTGAAGGAATAGCACAGCGATGGTACCCTATACATGTCTGA  200

seq1  GACCCCAGATGGCAGAGGAAAAAAAAGGGAAAACTTAAGCTGACGACTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAGATGGCAGAGGAAAAAAAAGGGAAAACTTAAGCTGACGACTTA  250

seq1  ACCAGACACGAGTCCTTGATTCCACCACGTCAGGGCTTCCCAAGATACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACACGAGTCCTTGATTCCACCACGTCAGGGCTTCCCAAGATACAC  300

seq1  ACACCTACCAGCCATGGAGACCCCAGCAGCTCCCCTAAGACAGCACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACCAGCCATGGAGACCCCAGCAGCTCCCCTAAGACAGCACAGAA  350

seq1  CTAACTACCATCACACACTAACTGTATACCCACGTGTCAGCTCCATGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTACCATCACACACTAACTGTATACCCACGTGTCAGCTCCATGGTG  400

seq1  TAACATTCATACACTTCTAAATTAGGGGTTTTGTTGCTGTTTTCTGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCATACACTTCTAAATTAGGGGTTTTGTTGCTGTTTTCTGACAG  450

seq1  GATCCCATAACCCAGGCTGGAATTGAACTCCCTATGTAGCCCAGGCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCATAACCCAGGCTGGAATTGAACTCCCTATGTAGCCCAGGCTGAG  500

seq1  ATTACAGACATCTGCTACTTTAGTAGGAACTTCTATAACCCTTATCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGACATCTGCTACTTTAGTAGGAACTTCTATAACCCTTATCTCTG  550

seq1  TGTAGCCTTGGCTGTCCTGGAATTC  575
      |||||||||||||||||||||||||
seq2  TGTAGCCTTGGCTGTCCTGGAATTC  575