BAC Information

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BAC

Clone NameB6Ng01-033F04
Chromosome15 (Build37)12 (Build37)
Map Location 25,227,321 - 25,227,51577,468,158 - 77,469,192
singlet/doubletsingletsinglet
Overlap gene4930445E18Rik
Upstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik
Downstream geneBasp1, EG432939, LOC100040583, Myo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033F04.bB6Ng01-033F04.g
ACCDH862404DH862405
length2541,032
definitionDH862404|Mus musculus domesticus DNA, BAC clone: B6Ng01-033F04, 5' end.DH862405|Mus musculus domesticus DNA, BAC clone: B6Ng01-033F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,227,321 - 25,227,515)(77,468,158 - 77,469,192)
sequence
caggacagccagggctaaacagagaaaccctgtctcaaaaaacaaacgaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaag
gaaggaggaaagaaagagagaaagaaagagagaatggctaccataggctc
atgtatttgaatgcttacttaccggagaggggctctatttgaaagaatta
gaaggattcagaggtttggccttactggaagaagtgtgtcactgagagga
aggt
gaattcacggcataccatatgtacgcaggagcctgtggaaaccagaagga
atccgtttccaggaactggagttatttcaagttaagagccacatgggcgc
tggaagccaaacctgggttgtctatatgcacagtaagcgctctcaactga
tgagccatctcgacagactaaaggaagaagcagtggctgaggaatctaac
tggcatgaagtggagatcaaaggatccaattccatcgctggtagaggtaa
ctactatcaactattttctttttggctttctctaaggactcagatgcact
tgctctgtgggataaacaagcagaaagggggcacaggaagtggtgtaggg
ctactttacaattcatcaaaataagagcacctgcactgcttttctatagg
aactctgacagttcgccaactctttcctagctcttacttcaaaaatggac
aaattggtcagataccaccagcagcttgcagggaataaatcactttgggt
cagcggtaggttaggcactatgctgcacttcccagcgtgctaggagattt
tactgccaagccgctcaggcccctcctcctcagctagacagcctggctcc
tttgcattcccctcaggagatcgggtggaagtacatagctccactttgta
aggcatagagggcagctgaaagtcctgcctggcctctctgagcaaccaca
ggcgccaataaatcagccacaggcgattctctcacccccttcctggggag
caagatgtaatgcgaaagagcactgactaggcttggaagataagtgattg
agactcacattccttgccaactactcttgtcaccacagtcaggtatacct
ctctggctcactcacttctgccgacttaaaacatatttatacaagacaat
actacccttttagggaattcagttattaaaactgccggcaaaggttagca
cacaaaactaaacctgactggaaactcttacagcttatatagtactgggc
atgacaagtctaggttgtggtggtgaggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_25227321_25227515
seq2: B6Ng01-033F04.b_102_308 (reverse)

seq1  ACCTTCCTCTCAGTGA---GCTTATTCAATTAATTGC------------T  35
      ||||||||||||||||    ||| ||| | |||   |             
seq2  ACCTTCCTCTCAGTGACACACTTCTTCCAGTAAGGCCAAACCTCTGAATC  50

seq1  CTTCTAATTAACAGTCAGAGAATGACCACAGTTAGCAAAGAAAGAGCCGA  85
      |||||||||  |  ||| | |  | || |  |  |  ||| |||      
seq2  CTTCTAATT--CTTTCAAATAGAG-CCCCTCTCCGGTAAGTAAG------  91

seq1  GAAGACATTTCATGATGTGACTATTAGTCCCTTGTGAGCC-TGATCT-TT  133
           ||||  |  ||   || || || ||  ||  |||| |  ||| ||
seq2  -----CATTCAA--AT---AC-ATGAG-CCTATGGTAGCCATTCTCTCTT  129

seq1  TCTTTCTCTCTTTCTTT----------------CTTTCTTTCTTTCTTTC  167
      |||||||||||||||||                |||||||||||||||||
seq2  TCTTTCTCTCTTTCTTTCCTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTC  179

seq1  TTTCTTTCTTTCTTTCTTTCTTTTTTTC  195
      ||||||||||||||||||||||| ||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTC  207

seq1: chr12_77468158_77469192
seq2: B6Ng01-033F04.g_70_1101

seq1  GAATTCA-GGCATACCATATGTACGCAGGAGCCTGTGGAAACCAGAAGGA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACGGCATACCATATGTACGCAGGAGCCTGTGGAAACCAGAAGGA  50

seq1  ATCCGTTTCCAGGAACTGGAGTTATTTCAAGTTAAGAGCCACATGGGCGC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTTCCAGGAACTGGAGTTATTTCAAGTTAAGAGCCACATGGGCGC  100

seq1  TGGAAGCCAAACCTGGGTTGTCTATATGCACAGTAAGCGCTCTCAACTGA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAAACCTGGGTTGTCTATATGCACAGTAAGCGCTCTCAACTGA  150

seq1  TGAGCCATCTCGACAGACTAAAGGAAGAAGCAGTGGCTGAGGAATCTAAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCTCGACAGACTAAAGGAAGAAGCAGTGGCTGAGGAATCTAAC  200

seq1  TGGCATGAAGTGGAGATCAAAGGATCCAATTCCATCGCTGGTAGAGGTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGAAGTGGAGATCAAAGGATCCAATTCCATCGCTGGTAGAGGTAA  250

seq1  CTACTATCAACTATTTTCTTTTTGGCTTTCTCTAAGGACTCAGATGCACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATCAACTATTTTCTTTTTGGCTTTCTCTAAGGACTCAGATGCACT  300

seq1  TGCTCTGTGGGATAAACAAGCAGAAAGGGGGCACAGGAAGTGGTGTAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGGGATAAACAAGCAGAAAGGGGGCACAGGAAGTGGTGTAGGG  350

seq1  CTACTTTACAATTCATCAAAATAAGAGCACCTGCACTGCTTTTCTATAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTACAATTCATCAAAATAAGAGCACCTGCACTGCTTTTCTATAGG  400

seq1  AACTCTGACAGTTCGCCAACTCTTTCCTAGCTCTTACTTCAAAAATGGAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGACAGTTCGCCAACTCTTTCCTAGCTCTTACTTCAAAAATGGAC  450

seq1  AAATTGGTCAGATACCACCAGCAGCTTGCAGGGAATAAATCACTTTGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGTCAGATACCACCAGCAGCTTGCAGGGAATAAATCACTTTGGGT  500

seq1  CAGCGGTAGGTTAGGCACTATGCTGCACTTCCCAGCGTGCTAGGAGATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGTAGGTTAGGCACTATGCTGCACTTCCCAGCGTGCTAGGAGATTT  550

seq1  TACTGCCAAGCCGCTCAGGCCCCTCCTCCTCAGCTAGACAGCCTGGCTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCAAGCCGCTCAGGCCCCTCCTCCTCAGCTAGACAGCCTGGCTCC  600

seq1  TTTGCATTCCCCTCAGGAGATCGGGTGGAAGTACATAGCTCCACTTTGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTCCCCTCAGGAGATCGGGTGGAAGTACATAGCTCCACTTTGTA  650

seq1  AGGCATAGAGGGCAGCTGAAAGTCCTGCCTGGCCTCTCTGAGCAACCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAGAGGGCAGCTGAAAGTCCTGCCTGGCCTCTCTGAGCAACCACA  700

seq1  GGCGCCAATAAATCAGCCACAGGCGATTCTCTCACCCCCTTCCTGGGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCCAATAAATCAGCCACAGGCGATTCTCTCACCCCCTTCCTGGGGAG  750

seq1  CAAGATGTAATGCGAAAGAGCACTGACTAGGCTTGGAAGATAAGTGATTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTAATGCGAAAGAGCACTGACTAGGCTTGGAAGATAAGTGATTG  800

seq1  AGACTCACATTCCTTTGCCAACTACTCTTGTCACCACAGTCAGGTATACC  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGACTCACATTCC-TTGCCAACTACTCTTGTCACCACAGTCAGGTATACC  849

seq1  TCTCTGGCTCACTCACTTCTGCCGACTTAAAACATATTTATAACAAGACA  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTCTGGCTCACTCACTTCTGCCGACTTAAAACATATTTAT-ACAAGACA  898

seq1  ATACTACCCTTTTAGGGAATTCAGTTATTAAAACTGCCGGCAAAGGTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACCCTTTTAGGGAATTCAGTTATTAAAACTGCCGGCAAAGGTTAG  948

seq1  CACACAAAACTAAACCTGACTGGAAACTCCTTACAGCTTATTATAGTACT  999
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  CACACAAAACTAAACCTGACTGGAAACT-CTTACAGCTTA-TATAGTACT  996

seq1  GGGCATGAC-AGTCTAGTGTGTGGTGGGGTAGGTGGG  1035
      ||||||||| |||||||  |||||||| | |||||||
seq2  GGGCATGACAAGTCTAGGTTGTGGTGGTG-AGGTGGG  1032