BAC Information

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BAC

Clone NameB6Ng01-034H04
Chromosome5 (Build37)15 (Build37)
Map Location 18,084,511 - 18,084,57690,076,196 - 90,077,378
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034H04.bB6Ng01-034H04.g
ACCDH863200DH863201
length9521,170
definitionDH863200|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H04, 5' end.DH863201|Mus musculus domesticus DNA, BAC clone: B6Ng01-034H04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,576)(90,076,196 - 90,077,378)
sequence
gaattctcaactgaggtatactgaatgtctgagaagcacctaaagaaatg
ttcaacagccttagtcatcagggaactgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagataaaaaaactcaagtgacag
cagatgctggtgaggatgtggagaaagagcaacactcctccatttctggt
gggattgcaagctggtacaaccactctggaaatcagtttggtggttcctt
agaaaattggacatagtaatacctgatgacccagcaataccactcctggg
catatagccaggagatgctccaacatgtaataaggacacatactccatta
tgttcatagcagtcttatttataatagccagaagctggaaagaacccaga
tccaacagagaaatggatacaaaaaatgtggtacatctacacaatggggt
actactcagctataaaaatggtgaattcatgaaattcttaggcaaatgga
tggaactagaaaatatcatcctaggtgaggtaacccaatcacaaaataac
aaaatagtatgcactcactgataagtggacattagcccagaagctgaggt
acaattcacagaccacatgaaactcaagaagaaggaagacttcttagtgt
gcttcttagaagcgggaacaaaataccgatagaaggagttacagagacaa
aatgtggaacagagactgaaaggaaagaccgtccagagactgccccacat
ggggatccattccatatacagtcaccaaacccagacactattgtggatgc
caacaagtgcttgctgacagaagcttgctaaagttctctcctaagaggct
ctaccagtgccttataaatacagagtggatgcttgcagtcaccattgact
gatcacaggtccccatagagagctagaaaaggacccaggagctgagggtt
tg
gaattctgccgatgcaggaacaggaagggcttcttcatttttttttccct
gtatattttggactttctcttccaatttactaagttttgatttagtatgg
agactgtcttgaatatatttccttagttcatgaatcccccaacaaaaata
ttagaacattgacccattaggagtcaggtcaaatgagctaaggaaaacct
ctcttcccaatatgcactataggttccacaagttaagacacgtggcagac
aattgtcccaatgccggcaacatgaatgaggagtagtaacagtaaaacaa
ggaaacgctgcatcttttatcaattaagagggagtccttaaatgttccag
taagactttaccattctttgaatagccacagaactacccaagcagaatag
tggtatccatggagcccaagaatgcaaggaaagggggcagaacagaacca
gaaccactacagaaggatccctcggccaagtgacagtgccactctacaat
gttgtttgcatgcatgtccctggggctaggctgcatcggggtgaactgta
agaacatcttgacctcgcagtgttggaacttgacctagatgtaggtcttt
ctctttcagtaaaattgaatttagctataaatgtggggttttttttttcc
ataataaaatagaaaacttgacatagtatttgaaactttttctcatcaga
cctttggcagagccttcgttagtatgcatcactgggaaagcatacactca
aagaaaaacatctttagattccaacttgtcacaaatctcataagtctcag
ttgaaatctctagtttttctgtttatatttaatttccaggatgcagaaca
aggaatatgaagatgaactgtatggcacaaagtaaatacacaaaaataaa
gacaagcaaacaaaatttttttgcatcgtggcaggttttgattgtatcaa
ccaaactaagatatcatatattttggtgtaagtttttatgccataagtat
aaggataaattttgattatgtctcctttagttcacaaggcatgaaacaaa
taaaactgaccagacacatagtagaggtgaaatgtatagaggctccgggc
ggggctgtgtatagaaataacctgggattctgaggcagcgaagttgaatg
atggttaccttggccgttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084576
seq2: B6Ng01-034H04.b_362_427 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||| |||||||||||||| ||||| |||||||
seq2  CTTCTGGCTATTATAAATAAGACTGCTATGAACATAATGGAGTATGTGTC  50

seq1  CTTCTTACCAGTTGGA  66
      ||| ||||  ||||||
seq2  CTTATTACATGTTGGA  66

seq1: chr15_90076196_90077378
seq2: B6Ng01-034H04.g_69_1238 (reverse)

seq1  GTAACAGCCAAGCTGAAACCATCATTCAACTTCGCTGCCTCAGAATCCAG  50
      ||||| ||||||  | ||||||||||||||||||||||||||||||||  
seq2  GTAACGGCCAAG--GTAACCATCATTCAACTTCGCTGCCTCAGAATCCCA  48

seq1  CGTCTAATTCTATTACACAGCACCCGGCCGGGAGCCTCTAT-CATTTCAC  99
       || || ||||| |||||||  ||| ||| ||||||||||| ||||||||
seq2  GGT-TATTTCTA-TACACAG--CCCCGCCCGGAGCCTCTATACATTTCAC  94

seq1  TCTTACTATGTTGTTCTTGGTCAGTTTTTATTTGTTTCATGCTTTGTGAA  149
         ||||||| |||   ||||||| ||||||||||||||||| |||||||
seq2  CTCTACTATG-TGT--CTGGTCAG-TTTTATTTGTTTCATGCCTTGTGAA  140

seq1  CTAAGGGAGACATTAATCAAAATTTATCCTTATACTTATGGCATAAAAAC  199
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGAGACA-TAATCAAAATTTATCCTTATACTTATGGCATAAAAAC  189

seq1  TTACA-CAAAATATAATGATATCTTAGTTTGGTTGATACAATCAAAACCT  248
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  TTACACCAAAATAT-ATGATATCTTAGTTTGGTTGATACAATCAAAACCT  238

seq1  GCCACGATGCAAAAATATTTTTGTTTGCTTGTCTTTATTTTTGTGTATTT  298
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  GCCACGATGCAAAAA-AATTTTGTTTGCTTGTCTTTATTTTTGTGTATTT  287

seq1  ACTTTTGTGCCATACAGTTCATCTTCATATTCCTTGTTCTGCATCCTGGA  348
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AC-TTTGTGCCATACAGTTCATCTTCATATTCCTTGTTCTGCATCCTGGA  336

seq1  AATTAAATATAAACAGAAAAACTAGAGATTTCAACTGAGACTTTATGAGA  398
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATTAAATATAAACAGAAAAACTAGAGATTTCAACTGAGAC-TTATGAGA  385

seq1  TTTGTGACAAGTTGGAATCTAAAGATGTTTTTCTTTGAGTGTATGCTTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGACAAGTTGGAATCTAAAGATGTTTTTCTTTGAGTGTATGCTTTC  435

seq1  CCAGTGATGCATACTAACGAAGGCTCTGCCAAAGGTCTGATGAGAAAAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGATGCATACTAACGAAGGCTCTGCCAAAGGTCTGATGAGAAAAAG  485

seq1  TTTCAAATACTATGTCAAGTTTTCTATTTTATTATGGAAAAAAAAAACCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATACTATGTCAAGTTTTCTATTTTATTATGGAAAAAAAAAACCC  535

seq1  CACATTTATAGCTAAATTCAATTTTACTGAAAGAGAAAGACCTACATCTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTATAGCTAAATTCAATTTTACTGAAAGAGAAAGACCTACATCTA  585

seq1  GGTCAAGTTCCAACACTGCGAGGTCAAGATGTTCTTACAGTTCACCCCGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAGTTCCAACACTGCGAGGTCAAGATGTTCTTACAGTTCACCCCGA  635

seq1  TGCAGCCTAGCCCCAGGGACATGCATGCAAACAACATTGTAGAGTGGCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTAGCCCCAGGGACATGCATGCAAACAACATTGTAGAGTGGCAC  685

seq1  TGTCACTTGGCCGAGGGATCCTTCTGTAGTGGTTCTGGTTCTGTTCTGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTGGCCGAGGGATCCTTCTGTAGTGGTTCTGGTTCTGTTCTGCC  735

seq1  CCCTTTCCTTGCATTCTTGGGCTCCATGGATACCACTATTCTGCTTGGGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCTTGCATTCTTGGGCTCCATGGATACCACTATTCTGCTTGGGT  785

seq1  AGTTCTGTGGCTATTCAAAGAATGGTAAAGTCTTACTGGAACATTTAAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTGGCTATTCAAAGAATGGTAAAGTCTTACTGGAACATTTAAGG  835

seq1  ACTCCCTCTTAATTGATAAAAGATGCAGCGTTTCCTTGTTTTACTGTTAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTCTTAATTGATAAAAGATGCAGCGTTTCCTTGTTTTACTGTTAC  885

seq1  TACTCCTCATTCATGTTGCCGGCATTGGGACAATTGTCTGCCACGTGTCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTCATTCATGTTGCCGGCATTGGGACAATTGTCTGCCACGTGTCT  935

seq1  TAACTTGTGGAACCTATAGTGCATATTGGGAAGAGAGGTTTTCCTTAGCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTGGAACCTATAGTGCATATTGGGAAGAGAGGTTTTCCTTAGCT  985

seq1  CATTTGACCTGACTCCTAATGGGTCAATGTTCTAATATTTTTGTTGGGGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGACCTGACTCCTAATGGGTCAATGTTCTAATATTTTTGTTGGGGG  1035

seq1  ATTCATGAACTAAGGAAATATATTCAAGACAGTCTCCATACTAAATCAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGAACTAAGGAAATATATTCAAGACAGTCTCCATACTAAATCAAA  1085

seq1  ACTTAGTAAATTGGAAGAGAAAGTCCAAAATATACAGGGAAAAAAAAATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTAAATTGGAAGAGAAAGTCCAAAATATACAGGGAAAAAAAAATG  1135

seq1  AAGAAGCCCTTCCTGTTCCTGCATCGGCAGAATTC  1183
      |||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCCTTCCTGTTCCTGCATCGGCAGAATTC  1170