BAC Information

Click to search

BAC

Clone NameB6Ng01-035C08
Chromosome15 (Build37)
Map Location 18,673,531 - 18,847,076
singlet/doubletdoublet
Overlap geneCdh10
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035C08.bB6Ng01-035C08.g
ACCDH863697DH863698
length1,0991,020
definitionDH863697|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C08, 5' end.DH863698|Mus musculus domesticus DNA, BAC clone: B6Ng01-035C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,845,953 - 18,847,076)(18,673,531 - 18,674,583)
sequence
gaattcaaggatatctttagattacatacctagcttaatactaatatcac
catgcaaacaaaaaacaaaatcactgacttttgattttcctctagcttaa
tggataccaactgttatttatatgattttctgacacaattcatactatca
ctgaacacacgctcaagtatacacaagtacattcacacacacacacacac
acacacacacacacacactttaatatgtgtatgagcttgaaagcagacaa
ttcctcttttcttattacagtcattgttatcttgtcgcgtgttttggata
tactagcacaagttaacgtctgtgttctcagcagacatcataggttatat
ctacaggtaggcgctgtctaatgtaatggaacataatagcaatgataccc
tggaactgtccataaaaattctccctgatgaaaatgtccatatactaaaa
ttgtctttgtatttatcttaaaatcataagtggaaagttttaaagtagaa
tttatatagtctagccttctattataattctgtactaatataccatttaa
caaagaggaaaaataaatcagaattcacagaaaaaaactatatatcaatt
acctggtatgatagaaaatcattacaatcaatgagccgaagtaacacaaa
ttaaatatatttctgtaagttagatatgcaaaattaaacactggcaggaa
atgtcatatgaaaccattccctggaatttactgtggtgtgcatcccgtga
tttgtggctgctttgtctaatttcagagtatatcactacaacctctggct
ctataatcgtgtctctctttgctaaggttgacaccctagagtccttccta
taaggatccatgtaattataccagaatttactctgtaatccagatatcac
ttcacatcagagtttatttaatcacatctcataatctctttaagacattt
agcagttatcacattttgggatataggacatggcatctctgggagcatta
ctatggcatgactgtaatggactgtctcaagattgtactccaccctctgt
tcatcttgatggtggctacctgcactgttgctcatactagatctggctg
gaattctgacccatcaccaataatcagttggtaatagctgctgagagaaa
actcagctctccttatagctgtggcatctcatctgggaggtaggacacac
tctaatagaaacaacttgttcaagagtttaatagtgggagaagttgaaaa
tcagtaaaaatcaattctctttactgatgggttgttttgatggattagca
acaaccataagatgttttcacccgtagccatacttaatgaaccacaggca
agttaaacttgtctttttctgaaagcgaaaaacacaagttgttcaccaca
ataatatgtgttttgatagctagagacagagatcttctcaaagcagtaaa
ggaaatcctaaaatatttctgttaggcagctgcatgttctcaaataacac
atcccaacattaatttgcatttgggatatttgaagagaaacactaaactg
tacactacatgatgatttctgaaaaaaaaatagaaaatattagcttttaa
attgttcttatcagataaaatgcatttggatgctcctcttcctggacaac
ttacctaaaacaccccagtaaacagagatgctcttattatgaaaagaggt
tttgtccatttgggtcagaccaaagttcttggggatttattttctatcaa
aggcggtcttctcagtgatggctacagcagatggcctgtgagtctcagtg
aaccacccacacctagcaactgttttcaaaagagattcttaccaaaaggg
aatgcaccccaaacactgcctaagtgtttatatgcaccaagaaaaattga
atccaataattgtttatgcctcacattttaaatcacaaatctgttagatt
gatttaggcactgaatgctgtgctatgtttggtttagtagaaaaagagta
agaaattgcaaatatatcatcgatgtcactagatgtcactaggacagcag
catctgtgtctgaggctgcactcattagtcagcttatgcagatcagctca
taattatactggtcatacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18845953_18847076
seq2: B6Ng01-035C08.b_45_1143 (reverse)

seq1  CAGCCAGATCTAAGTATTGGAAGCAAACAGTGCAGGTAGCACACATCAAA  50
      ||||||||||| |||||    ||| |||||||||||||||   |||| ||
seq2  CAGCCAGATCT-AGTAT---GAGC-AACAGTGCAGGTAGCCACCATC-AA  44

seq1  GATGAAACAGGAGGTGGAGTACAGATCCTATGAGACAGGTCCTATTACCA  100
      |||| |||||  ||||||||||| |||   ||||||| |||| |||| ||
seq2  GATG-AACAGAGGGTGGAGTACA-ATC--TTGAGACA-GTCC-ATTA-CA  87

seq1  GTCAATGCCATAGTAAATGCTCCCAGAGATGCCATGTCCTATATCCCAAA  150
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTC-ATGCCATAGT-AATGCTCCCAGAGATGCCATGTCCTATATCCCAAA  135

seq1  ATGTGAATATACTGCTTAAATGTCTTAAAGAGATTATGGAGATGTGATTA  200
      ||||| ||| ||||| ||||||||||||||||||||| ||||||||||||
seq2  ATGTG-ATA-ACTGC-TAAATGTCTTAAAGAGATTAT-GAGATGTGATTA  181

seq1  AATTAAAACTCTTGATGTGAAGTGATTATCCTGGATTACAGAGTAAATTC  250
      |||  |||||| ||||||||||||| ||| ||||||||||||||||||||
seq2  AAT--AAACTC-TGATGTGAAGTGA-TAT-CTGGATTACAGAGTAAATTC  226

seq1  TGGTATAATTACATGGATCCTTATAGGAAGGACTCTAGGGTGTCAACCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAATTACATGGATCCTTATAGGAAGGACTCTAGGGTGTCAACCTT  276

seq1  AGCAAAAGAGAGACACGATTATAGAGCCAGAGGTTGTAGTGATATACTCT  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGC-AAAGAGAGACACGATTATAGAGCCAGAGGTTGTAGTGATATACTCT  325

seq1  GAAATTAGACAAAGCAGCCACAAATCACGGGATGCACACCACAGTAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGACAAAGCAGCCACAAATCACGGGATGCACACCACAGTAAATT  375

seq1  CCAGGGAATGGTTTCATATGACATTTCCTGCCAGTGTTTAATTTTGCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAATGGTTTCATATGACATTTCCTGCCAGTGTTTAATTTTGCATA  425

seq1  TCTAACTTACAGAAATATATTTAATTTGTGTTACTTCGGCTCATTGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTTACAGAAATATATTTAATTTGTGTTACTTCGGCTCATTGATTG  475

seq1  TAATGATTTTCTATCATACCAGGTAATTGATATATAGTTTTTTTCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATTTTCTATCATACCAGGTAATTGATATATAGTTTTTTTCTGTGA  525

seq1  ATTCTGATTTATTTTTCCTCTTTGTTAAATGGTATATTAGTACAGAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATTTATTTTTCCTCTTTGTTAAATGGTATATTAGTACAGAATTA  575

seq1  TAATAGAAGGCTAGACTATATAAATTCTACTTTAAAACTTTCCACTTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAGGCTAGACTATATAAATTCTACTTTAAAACTTTCCACTTATG  625

seq1  ATTTTAAGATAAATACAAAGACAATTTTAGTATATGGACATTTTCATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGATAAATACAAAGACAATTTTAGTATATGGACATTTTCATCAG  675

seq1  GGAGAATTTTTATGGACAGTTCCAGGGTATCATTGCTATTATGTTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATTTTTATGGACAGTTCCAGGGTATCATTGCTATTATGTTCCATT  725

seq1  ACATTAGACAGCGCCTACCTGTAGATATAACCTATGATGTCTGCTGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGACAGCGCCTACCTGTAGATATAACCTATGATGTCTGCTGAGAA  775

seq1  CACAGACGTTAACTTGTGCTAGTATATCCAAAACACGCGACAAGATAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACGTTAACTTGTGCTAGTATATCCAAAACACGCGACAAGATAACA  825

seq1  ATGACTGTAATAAGAAAAGAGGAATTGTCTGCTTTCAAGCTCATACACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGTAATAAGAAAAGAGGAATTGTCTGCTTTCAAGCTCATACACAT  875

seq1  ATTAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGTACTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATGTACTT  925

seq1  GTGTATACTTGAGCGTGTGTTCAGTGATAGTATGAATTGTGTCAGAAAAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATACTTGAGCGTGTGTTCAGTGATAGTATGAATTGTGTCAGAAAAT  975

seq1  CATATAAATAACAGTTGGTATCCATTAAGCTAGAGGAAAATCAAAAGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAATAACAGTTGGTATCCATTAAGCTAGAGGAAAATCAAAAGTCA  1025

seq1  GTGATTTTGTTTTTTGTTTGCATGGTGATATTAGTATTAAGCTAGGTATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTGTTTTTTGTTTGCATGGTGATATTAGTATTAAGCTAGGTATG  1075

seq1  TAATCTAAAGATATCCTTGAATTC  1124
      ||||||||||||||||||||||||
seq2  TAATCTAAAGATATCCTTGAATTC  1099

seq1: chr15_18673531_18674583
seq2: B6Ng01-035C08.g_69_1088

seq1  GAATTCTGACCCATCACCAATAATCAGTTGGTAATAGCTGCTGAGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACCCATCACCAATAATCAGTTGGTAATAGCTGCTGAGAGAAA  50

seq1  ACTCAGCTCTCCTTATAGCTGTGGCATCTCATCTGGGAGGTAGGACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTCTCCTTATAGCTGTGGCATCTCATCTGGGAGGTAGGACACAC  100

seq1  TCTAATAGAAACAACTTGTTCAAGAGTTTAATAGTGGGAGAAGTTGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATAGAAACAACTTGTTCAAGAGTTTAATAGTGGGAGAAGTTGAAAA  150

seq1  TCAGTAAAAATCAATTCTCTTTACTGATGGGTTGTTTTGATGGATTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAAATCAATTCTCTTTACTGATGGGTTGTTTTGATGGATTAGCA  200

seq1  ACAACCATAAGATGTTTTCACCCGTAGCCATACTTAATGAACCACAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCATAAGATGTTTTCACCCGTAGCCATACTTAATGAACCACAGGCA  250

seq1  AGTTAAACTTGTCTTTTTCTGAAAGCGAAAAACACAAGTTGTTCACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAACTTGTCTTTTTCTGAAAGCGAAAAACACAAGTTGTTCACCACA  300

seq1  ATAATATGTGTTTTGATAGCTAGAGACAGAGATCTTCTCAAAGCAGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATGTGTTTTGATAGCTAGAGACAGAGATCTTCTCAAAGCAGTAAA  350

seq1  GGAAATCCTAAAATATTTCTGTTAGGCAGCTGCATGTTCTCAAATAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCTAAAATATTTCTGTTAGGCAGCTGCATGTTCTCAAATAACAC  400

seq1  ATCCCAACATTAATTTGCATTTGGGATATTTGAAGAGAAACACTAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAACATTAATTTGCATTTGGGATATTTGAAGAGAAACACTAAACTG  450

seq1  TACACTACATGATGATTTCTGAAAAAAAAATAGAAAATATTAGCTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTACATGATGATTTCTGAAAAAAAAATAGAAAATATTAGCTTTTAA  500

seq1  ATTGTTCTTATCAGATAAAATGCATTTGGATGCTCCTCTTCCTGGACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTTATCAGATAAAATGCATTTGGATGCTCCTCTTCCTGGACAAC  550

seq1  TTACCTAAAACACCCCAGTAAACAGAGATGCTCTTATTATGAAAAGAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAAAACACCCCAGTAAACAGAGATGCTCTTATTATGAAAAGAGGT  600

seq1  TTTGTCCATTTGGGTCAGACCAAAGTTCTT-GGGATTTATTTTCTATCAA  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTGTCCATTTGGGTCAGACCAAAGTTCTTGGGGATTTATTTTCTATCAA  650

seq1  AGGCGGTCTTCTCAGTGATGGCTACAGCAGATGGCCTGTGAGTCTCAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGGTCTTCTCAGTGATGGCTACAGCAGATGGCCTGTGAGTCTCAGTG  700

seq1  AACCACCCACACCTAGCAACTGTTTTCAAAAAGAGATTCTTACCAAAAGG  749
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACCACCCACACCTAGCAACTGTTTTC-AAAAGAGATTCTTACCAAAAGG  749

seq1  GAATGCACCCCAAACACTGCCTAAGTGTTTTATATGCACCAAAGAAAAAT  799
      ||||||||||||||||||||||||||| |||||||||||| |||||||||
seq2  GAATGCACCCCAAACACTGCCTAAGTG-TTTATATGCACC-AAGAAAAAT  797

seq1  TGAATCCAATAATTGTATTATGCCTCACCATTTTAAATCACAAATCTGTT  849
      |||||||||||||||| |||||||||| ||||||||||||||||||||||
seq2  TGAATCCAATAATTGT-TTATGCCTCA-CATTTTAAATCACAAATCTGTT  845

seq1  AGATTGATTTTAGGCACTGAATGCTGTTGCTATTGTTTTGGTTTAAGTAG  899
      ||||||| |||||||||||||||||| ||||||   |||||||| |||||
seq2  AGATTGA-TTTAGGCACTGAATGCTG-TGCTAT--GTTTGGTTT-AGTAG  890

seq1  AAAAAGAGTAAAGAAAATTGCAAATATATTCATCGATGTCAACCTAGGAT  949
      |||||||||||   |||||||||||||| ||||||||||||  ||| |||
seq2  AAAAAGAGTAA--GAAATTGCAAATATA-TCATCGATGTCA--CTA-GAT  934

seq1  GTCACTTAGAACAGCCAGGCATCCCTGGTGTCTGGAGGGCTTGCAACTCA  999
      ||||| ||| |||||   |||||    |||||| ||||   ||| |||||
seq2  GTCAC-TAGGACAGC--AGCATC---TGTGTCT-GAGG--CTGC-ACTCA  974

seq1  TTTAGTCAGCTTATGGCAAGAATCAGCTCATATATTATACTTGGGTCCAT  1049
       ||||||||||||| |||   ||||||||||| ||||||||  ||| |||
seq2  -TTAGTCAGCTTAT-GCA--GATCAGCTCATA-ATTATACT--GGT-CAT  1016

seq1  ACAT  1053
      ||||
seq2  ACAT  1020