BAC Information

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BAC

Clone NameB6Ng01-035I17
Chromosome15 (Build37)
Map Location 100,453,758 - 100,617,330
singlet/doubletdoublet
Overlap geneBC004728, Bin2, Ela1, Galnt6, Slc4a8
Upstream geneRacgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2
Downstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035I17.bB6Ng01-035I17.g
ACCDH863979DH863980
length1,000569
definitionDH863979|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I17, 5' end.DH863980|Mus musculus domesticus DNA, BAC clone: B6Ng01-035I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,616,299 - 100,617,330)(100,453,758 - 100,454,330)
sequence
gaattccaggacagccagggctacacagagaaacgctgtctcaaaaaaca
aaaaacaaaaaagcacctgtagctcccggaagctggaagctggagaaacg
ttcctgttgtgggcctttgaggaatgcagcccaaactaaactcatttcag
atttctgacttccaaacttactgattggttcactggttttattttgagac
aagactttgctacaagcccaggctagtgttgaacctcatctacctgcctt
aacctctggatgctgggatcacgggcacgagccaccacacggatggagat
gtatcccagcagtcctaggagggtaacacaggtttggtggctgttgtccg
atttttgtgacactgctgagtggccctcagtctccaagggtgatactttt
ctttcacccaacctatgacccctgagccagcttcagacaggtggagtccc
cacccccactgctgaccacaataacctgaaccacctttagaagacctagg
ggcacatttcagttcagatctgtctctcaagtgtcatggcagctccaatt
acacacagacactgccatctggatgccaccaggttgttaccatcaattct
acctcccgagctgcattggaaacagtgcccttccgccactgccccatgca
ggcagcgctctgcctcctctcttcccatggcctgacgtattaactcagcc
tccatcattcttacagctgccctgccaaggcttggctgagtctcattgtt
gagggctgtagggcactaattcccagggattcctctatccaaaacacggc
acacactttcttaggaacttcgcaggctcttagacacgtatgtagttaca
gtcagtgaaagacagtgtgacccttttggaacacagttcaagatggagca
tgtgaggagactctgattgcttatgaaaaaaaaagattaaaaactcaaaa
catgtctgtgactcagttctcaccagtgtgggattggctccacgccctgc

caggctagccagggttattgaatgagaccatgagggggttgggttttgct
aggtgtggtgacatgtctataatcccagaactcagggctgagaaagattg
ttcaagatcctcctgtactatatagagctccaggctacaaatacaatccc
tgtcctttgccagctgtgcgcccttggataagaaagaatcacctaaccca
tctgcatcgctcgctgcagatgctaacggggtgacaatacctagttgtac
gattgtaactatgacactacgacaggagggttatagtaatgtaaggggca
cgttgagtgcagagagagagagaaggggggatgtaaacgtctgtgtctct
gtgtgtctgtgtatgtatgtggtatgtgtctgtgtgtgtgatgcagcatc
atggtgtatccagtacattttgcagcgttctacatactctaacatactcc
tgcccgtggggtgtacttgtggaagtcacaggggacgagttctgggctcc
atcctcaccatcctctcggtttgacacaggatctcttcctgttcctctgc
tccctaacactggctggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100616299_100617330
seq2: B6Ng01-035I17.b_41_1040 (reverse)

seq1  GCAGGGCGTGGAAGCACATCCCCACACTGCGTTTGAAGAAACTGAGGTCA  50
      ||||||||||| ||| ||  |||||||||    |||   |||||| ||||
seq2  GCAGGGCGTGG-AGC-CAATCCCACACTG---GTGA--GAACTGA-GTCA  42

seq1  CAGGACATGGTTTTTTGGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  100
      || ||||||    ||| ||||||||  | |||||||||            
seq2  CA-GACATG----TTTTGAGTTTTTAATCTTTTTTTTT------------  75

seq1  CCATAAGCACTCAGAAGTCTCCTCACACTGCTCCATCCTTGAACTGTGTT  150
       |||||||| |||| |||||||||||| |||||||| |||||||||||||
seq2  -CATAAGCAATCAG-AGTCTCCTCACA-TGCTCCAT-CTTGAACTGTGTT  121

seq1  CCAAAAGGGTCACAACTGTCTTTCACTGACTTGTAACTACATACGTGTCT  200
      ||||||||||||| |||||||||||||||| |||||||||||||||||||
seq2  CCAAAAGGGTCAC-ACTGTCTTTCACTGAC-TGTAACTACATACGTGTCT  169

seq1  AAGAGCCTGCGAAGTTCCTAAGAAAGTGTGTGCCGTGTTTTGGATAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTGCGAAGTTCCTAAGAAAGTGTGTGCCGTGTTTTGGATAGAGG  219

seq1  AATCCCTGGGAATTAGTGCCCTACAGCCCTCAACAATGAGACCTCAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATCCCTGGGAATTAGTGCCCTACAGCCCTCAACAATGAGA-CTCAGCCA  268

seq1  AGCCTTGGCAGGGCAGCTGTAAGAATGATGGAGGCTGAGTTAATACGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCAGGGCAGCTGTAAGAATGATGGAGGCTGAGTTAATACGTCA  318

seq1  GGCCATGGGAAGAGAGGAGGCAGAGCGCTGCCTGCATGGGGCAGTGGCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGGAAGAGAGGAGGCAGAGCGCTGCCTGCATGGGGCAGTGGCGG  368

seq1  AAGGGCACTGTTTCCAATGCAGCTCGGGAGGTAGAATTGATGGTAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACTGTTTCCAATGCAGCTCGGGAGGTAGAATTGATGGTAACAAC  418

seq1  CTGGTGGCATCCAGATGGCAGTGTCTGTGTGTAATTGGAGCTGCCATGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCATCCAGATGGCAGTGTCTGTGTGTAATTGGAGCTGCCATGAC  468

seq1  ACTTGAGAGACAGATCTGAACTGAAATGTGCCCCTAGGTCTTCTAAAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAGACAGATCTGAACTGAAATGTGCCCCTAGGTCTTCTAAAGGT  518

seq1  GGTTCAGGTTATTGTGGTCAGCAGTGGGGGTGGGGACTCCACCTGTCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAGGTTATTGTGGTCAGCAGTGGGGGTGGGGACTCCACCTGTCTGA  568

seq1  AGCTGGCTCAGGGGTCATAGGTTGGGTGAAAGAAAAGTATCACCCTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTCAGGGGTCATAGGTTGGGTGAAAGAAAAGTATCACCCTTGGA  618

seq1  GACTGAGGGCCACTCAGCAGTGTCACAAAAATCGGACAACAGCCACCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGGCCACTCAGCAGTGTCACAAAAATCGGACAACAGCCACCAAA  668

seq1  CCTGTGTTACCCTCCTAGGACTGCTGGGATACATCTCCATCCGTGTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTTACCCTCCTAGGACTGCTGGGATACATCTCCATCCGTGTGGTG  718

seq1  GCTCGTGCCCGTGATCCCAGCATCCAGAGGTTAAGGCAGGTAGATGAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTGCCCGTGATCCCAGCATCCAGAGGTTAAGGCAGGTAGATGAGGT  768

seq1  TCAACACTAGCCTGGGCTTGTAGCAAAGTCTTGTCTCAAAATAAAACCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACACTAGCCTGGGCTTGTAGCAAAGTCTTGTCTCAAAATAAAACCAG  818

seq1  TGAACCAATCAGTAAGTTTGGAAGTCAGAAATCTGAAATGAGTTTAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCAATCAGTAAGTTTGGAAGTCAGAAATCTGAAATGAGTTTAGTTT  868

seq1  GGGCTGCATTCCTCAAAGGCCCACAACAGGAACGTTTCTCCAGCTTCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCATTCCTCAAAGGCCCACAACAGGAACGTTTCTCCAGCTTCCAG  918

seq1  CTTCCGGGAGCTACAGGTGCTTTTTTGTTTTTTGTTTTTTGAGACAGCGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGGGAGCTACAGGTGCTTTTTTGTTTTTTGTTTTTTGAGACAGCGT  968

seq1  TTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  1032
      ||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCCCTGGCTGTCCTGGAATTC  1000

seq1: chr15_100453758_100454330
seq2: B6Ng01-035I17.g_70_644

seq1  GAATTCCAGGCTAGCCAGGGTTATTGAATGAGACCATGAGGGGGTTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCTAGCCAGGGTTATTGAATGAGACCATGAGGGGGTTGGGT  50

seq1  TTTGCTAGGTGTGGTGACATGTCTATAATCCCAGAACTCAGGGCTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGGTGTGGTGACATGTCTATAATCCCAGAACTCAGGGCTGAGAA  100

seq1  AGATTGTTCAAGATCCTCCTGTACTATATAGAGCTCCAGGCTACAAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGTTCAAGATCCTCCTGTACTATATAGAGCTCCAGGCTACAAATAC  150

seq1  AATCCCTGTCCTTTGCCAGCTGTGCGCCCTTGGATAAGAAAGAATCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGTCCTTTGCCAGCTGTGCGCCCTTGGATAAGAAAGAATCACCT  200

seq1  AACCCATCTGCATCGCTCGCTGCAGATGCTAACGGGGTGACAATACCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCTGCATCGCTCGCTGCAGATGCTAACGGGGTGACAATACCTAG  250

seq1  TTGTACGATTGTAACTATGACACTACGACAGGAGGGTTATAGTAATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACGATTGTAACTATGACACTACGACAGGAGGGTTATAGTAATGTAA  300

seq1  GGGGCACGTTGAGTGCAGAGAGAGAGAGAAGGGGGGATGTAAACGTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACGTTGAGTGCAGAGAGAGAGAGAAGGGGGGATGTAAACGTCTGT  350

seq1  GTCTCTGTGTGTCTGTGTATGTATGTGGTATGTGTCTGTGTGTGTGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGTGTCTGTGTATGTATGTGGTATGTGTCTGTGTGTGTGATGC  400

seq1  AGCATCATGGTGTATCCAGTACATTTTGCAGCGTTCTACATACTCTAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATGGTGTATCCAGTACATTTTGCAGCGTTCTACATACTCTAACA  450

seq1  TACTCCTGCCCGTGGGGTGTACTTGTGGAAGTCACAGGGGACGAGTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGCCCGTGGGGTGTACTTGTGGAAGTCACAGGGGACGAGTTCTG  500

seq1  GGCTCCATCCTCACCATCCTCTCGGTTTGACACAGGATCTCTTCCTG-TC  549
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCTCCATCCTCACCATCCTCTCGGTTTGACACAGGATCTCTTCCTGTTC  550

seq1  CTCTGCTCCCT-ACACTGGCTGGCC  573
      ||||||||||| |||||||||||||
seq2  CTCTGCTCCCTAACACTGGCTGGCC  575