BAC Information

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BAC

Clone NameB6Ng01-035K19
Chromosome15 (Build37)
Map Location 22,196,186 - 22,316,142
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035K19.bB6Ng01-035K19.g
ACCDH864079DH864080
length870994
definitionDH864079|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K19, 5' end.DH864080|Mus musculus domesticus DNA, BAC clone: B6Ng01-035K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,196,186 - 22,197,070)(22,315,119 - 22,316,142)
sequence
gaattctcttaaaatatgctttatttaatgttcaaaattattttatgtct
atgtgtgtgggcatgcacatgtaagtgttgggaaaggcaagaggccttgg
atctccctagatctgaagttagagtggtttgcaagctgtgttacaggagt
gatggttattaaactcttgccctctgtaagagaagtaaatgcatataaaa
gctgaaccatctcttcaaccttgttagcttgttttgaatctctgtggtca
cagtatcttacagaaaagcgaaagggttgttgttggcttatagcttcaaa
gaatttcaggtcatttggggtggctggggtagatgtggcaaagcagcctc
atcaaggcagagtcctggcactgttaacattacaaaggtttggaaagcaa
agaacaaaaggagaactgagagacaaagtctgccctagtgacctactttc
ttcatgtgggctccatttctcaaagagccagagcctttttaaaagagcat
ctccaaatggttatgaggaattcagtatctgagcataaatggagcaggtg
agatttaaactgtgtcactactcacccctttattaagattagggaatatc
ttatatttgatacttgtatttgtaatataccaacaatgttttttggatct
ttttgcagttctgtactcagatgcataaaaatgatgggaaacaagttgat
tgtaggtcggaatacaagaaattccttatttctagattctattattatct
gtacaatgcagaagagatttcaattccagcaatgagatttatcttcatgg
gattctctgtgaaaagtttcaagtatggatcctaatatgagactgatgta
gagtctcaaataatagcttt
gaattcactcttctcacttgatgagaatattcacagaatgataaaatgga
gaggctagattctcagtaatggttctgtagactgggctctttctgtcttt
tcttactatacattctcagcaggtcaatttggattttcacactcactgac
ttatggctgctataaagcttctgtgtctccatatagcaatcgcttgtgta
aacgaaaaggttgcaaatgagagagaaaaaaactcttttatattacaagt
tactagaatcagaaacactaaactaagtgagttctacttgagtcccattg
agctcctctacttgtgtttagaaagcataggctaggaattagactcacac
acacacacacacacacacacacacacacacactctatatgtagttcaatt
taataagttatacaacttttaagaaagtggtttaaaaatatcaaaatttt
ttgactgctccccagggtcataaaatagttgttatatcttaagactcata
tgggaatatggattttatgttaatagctgtttataattggtaacttaatt
tccttaaatttctggtaatttgaggtcatgaaaaactagaaaaataaagt
acaattttactacaagtagtaacaaaagcattaaccttatagtctgacat
atcattcctaatgagggttctcagatagataatgtgagaatgtatttaaa
acacagggtatgctattttgtagctattgagctaacagcctcatgttcct
ccttcagaatctgtgcttctcaccagcttcatgaacgtattatgcaagct
gtgagttttgcaagctctcggagaacagtgtacacacaactaaaaggtct
ctagagaaaacaacaaaacaaaaaactaacaaacaaatgtctttgctaat
ttcactgtgactacagatctcataagacatcataccacaagtgcacctct
ctttttgaacttcatgttattttactataaatcttcttattaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_22196186_22197070
seq2: B6Ng01-035K19.b_47_916

seq1  GAATTCTCTTAAAATATGCTTTATTTAATGTTCAAAATTATTTTATGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTAAAATATGCTTTATTTAATGTTCAAAATTATTTTATGTCT  50

seq1  ATGTGTGTGGGCATGCACATGTAAGTGTTGGGAAAGGCAAGAGGCCTTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGGGCATGCACATGTAAGTGTTGGGAAAGGCAAGAGGCCTTGG  100

seq1  ATCTCCCTAGATCTGAAGTTAGAGTGGTTTGCAAGCTGTGTTACAGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTAGATCTGAAGTTAGAGTGGTTTGCAAGCTGTGTTACAGGAGT  150

seq1  GATGGTTATTAAACTCTTGCCCTCTGTAAGAGAAGTAAATGCATATAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTATTAAACTCTTGCCCTCTGTAAGAGAAGTAAATGCATATAAAA  200

seq1  GCTGAACCATCTCTTCAACCTTGTTAGCTTGTTTTGAATCTCTGTGGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACCATCTCTTCAACCTTGTTAGCTTGTTTTGAATCTCTGTGGTCA  250

seq1  CAGTATCTTACAGAAAAGCGAAAGGGTTGTTGTTGGCTTATAGCTTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTTACAGAAAAGCGAAAGGGTTGTTGTTGGCTTATAGCTTCAAA  300

seq1  GAATTTCAGGTCATTTGGGGTGGCTGGGGTAGATGTGGCAAAGCAGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAGGTCATTTGGGGTGGCTGGGGTAGATGTGGCAAAGCAGCCTC  350

seq1  ATCAAGGCAGAGTCCTGGCACTGTTAACATTACAAAGGTTTGGAAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGCAGAGTCCTGGCACTGTTAACATTACAAAGGTTTGGAAAGCAA  400

seq1  AGAACAAAAGGAGAACTGAGAGACAAAGTCTGCCCTAGTGACCTACTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAAAGGAGAACTGAGAGACAAAGTCTGCCCTAGTGACCTACTTTC  450

seq1  TTCATGTGGGCTCCATTTCTCAAAGAGCCAGAGCCTTTTTAAAAGAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTGGGCTCCATTTCTCAAAGAGCCAGAGCCTTTTTAAAAGAGCAT  500

seq1  CTCCAAATGGTTATGAGGAATTCAGTATCTGAGCATAAATGGAGCAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAATGGTTATGAGGAATTCAGTATCTGAGCATAAATGGAGCAGGTG  550

seq1  AGATTTAAACTGTGTCACTACTCACCCCTTTATTAAGATTAGGGAATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAACTGTGTCACTACTCACCCCTTTATTAAGATTAGGGAATATC  600

seq1  TTATATTTGATACTTGTATTTGTAATATACCAACAATGTTTTTTGGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTGATACTTGTATTTGTAATATACCAACAATGTTTTTTGGATCT  650

seq1  TTTTGCAGGTTCTGTACTCAGATGCATAAAAATGATGGGAAACAAGTTGA  700
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCA-GTTCTGTACTCAGATGCATAAAAATGATGGGAAACAAGTTGA  699

seq1  TTGTAGGTCGGAATACAAGAAATTCCTTATTTCTAGATTCTATTATTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGGTCGGAATACAAGAAATTCCTTATTTCTAGATTCTATTATTATC  749

seq1  TGTACAATGCAAGAAGAGAATTTCAATTCCAGCAATGAGATTTATCTTCA  800
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  TGTACAATGC-AGAAGAG-ATTTCAATTCCAGCAATGAGATTTATCTTCA  797

seq1  TGGGATTCTCTGTTGAAAAAGGTTTCAAAGTAATGGAATCCCTAAATATG  850
      |||||||||||| ||||||  ||||| |||| |||| ||||   ||||||
seq2  TGGGATTCTCTG-TGAAAA--GTTTC-AAGT-ATGG-ATCC--TAATATG  839

seq1  AGACCTGATGTAGAAGTTCTCAAAATAATAGCTTT  885
      ||| ||||||||||   |||| |||||||||||||
seq2  AGA-CTGATGTAGA--GTCTC-AAATAATAGCTTT  870

seq1: chr15_22315119_22316142
seq2: B6Ng01-035K19.g_67_1060 (reverse)

seq1  ATTAATAAGATAGAATTTAATAGGTTACAAATAAACATGAAGTTTCACAA  50
      |||||||||| |||  || ||||  || |||| ||||||||| |||| ||
seq2  ATTAATAAGA-AGA--TTTATAG--TA-AAAT-AACATGAAG-TTCA-AA  41

seq1  AAGAGAGGTGCACTTGTGGTATTGATGTC-TATGAAGATCCTGGTAGTCA  99
      ||||||||||||||||||||| ||||||| |||| |||||   |||||||
seq2  AAGAGAGGTGCACTTGTGGTA-TGATGTCTTATG-AGATC--TGTAGTCA  87

seq1  CCAGTGAAATTAGCAAAGGACAATTTTGTTTTGTTTAGTTTTTTTTGTTT  149
       |||||||||||||||| ||||  |||||||   |||||||||| | || 
seq2  -CAGTGAAATTAGCAAA-GACA--TTTGTTT--GTTAGTTTTTTGTTTTG  131

seq1  TTGTTTGTTTTTTCTCTTAGGGACCTTTTAGTTGTGTGGTACAACTGTTC  199
      |||      ||||||| ||| |||||||||||||||| |||| |||||||
seq2  TTG------TTTTCTC-TAGAGACCTTTTAGTTGTGT-GTAC-ACTGTTC  172

seq1  TCCGAGGAGCTTGCAAAACTCACAGCTTGCATAATAACGTTCATGAAGCT  249
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCCGA-GAGCTTGCAAAACTCACAGCTTGCATAAT-ACGTTCATGAAGCT  220

seq1  GGTGAG-AGCACAGATTTCTTGAAGGAGGAACATGAGGCTGTTAGCTCAA  298
      |||||| ||||||||||   ||||||||||||||||||||||||||||||
seq2  GGTGAGAAGCACAGATT--CTGAAGGAGGAACATGAGGCTGTTAGCTCAA  268

seq1  TAGCTACAAAATAGCATACCCTGTGTTTTTAAATACATTCTCACATTATC  348
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGCTACAAAATAGCATACCCTGTG-TTTTAAATACATTCTCACATTATC  317

seq1  TATCTGAGAACCCTCATTAGGAATGATATGTCAGACTATAAGGTTAATGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGAACCCTCATTAGGAATGATATGTCAGACTATAAGGTTAATGC  367

seq1  TTTTGTTACTACTTGTAGT-AAATTGTACTTTATTTTTCTAGTTTTTCAT  447
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTTGTTACTACTTGTAGTAAAATTGTACTTTATTTTTCTAGTTTTTCAT  417

seq1  GACCTCAAATTACCAGAAATTTAAGGAAATTAAGTTACCAATTATAAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAAATTACCAGAAATTTAAGGAAATTAAGTTACCAATTATAAACA  467

seq1  GCTATTAACATAAAATCCATATTCCCATATGAGTCTTAAGATATAACAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTAACATAAAATCCATATTCCCATATGAGTCTTAAGATATAACAAC  517

seq1  TATTTTATGACCCTGGGGAGCAGTCAAAAAATTTTGATATTTTTAAACCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGACCCTGGGGAGCAGTCAAAAAATTTTGATATTTTTAAACCA  567

seq1  CTTTCTTAAAAGTTGTATAACTTATTAAATTGAACTACATATAGAGTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTAAAAGTTGTATAACTTATTAAATTGAACTACATATAGAGTGTG  617

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTCTAATTCCTAGCCTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTCTAATTCCTAGCCTA  667

seq1  TGCTTTCTAAACACAAGTAGAGGAGCTCAATGGGACTCAAGTAGAACTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTAAACACAAGTAGAGGAGCTCAATGGGACTCAAGTAGAACTCA  717

seq1  CTTAGTTTAGTGTTTCTGATTCTAGTAACTTGTAATATAAAAGAGTTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTTAGTGTTTCTGATTCTAGTAACTTGTAATATAAAAGAGTTTTT  767

seq1  TTCTCTCTCATTTGCAACCTTTTCGTTTACACAAGCGATTGCTATATGGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCATTTGCAACCTTTTCGTTTACACAAGCGATTGCTATATGGA  817

seq1  GACACAGAAGCTTTATAGCAGCCATAAGTCAGTGAGTGTGAAAATCCAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGAAGCTTTATAGCAGCCATAAGTCAGTGAGTGTGAAAATCCAAA  867

seq1  TTGACCTGCTGAGAATGTATAGTAAGAAAAGACAGAAAGAGCCCAGTCTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTGCTGAGAATGTATAGTAAGAAAAGACAGAAAGAGCCCAGTCTA  917

seq1  CAGAACCATTACTGAGAATCTAGCCTCTCCATTTTATCATTCTGTGAATA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCATTACTGAGAATCTAGCCTCTCCATTTTATCATTCTGTGAATA  967

seq1  TTCTCATCAAGTGAGAAGAGTGAATTC  1024
      |||||||||||||||||||||||||||
seq2  TTCTCATCAAGTGAGAAGAGTGAATTC  994