BAC Information

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BAC

Clone NameB6Ng01-035O11
Chromosome15 (Build37)
Map Location 39,644,485 - 39,793,337
singlet/doubletdoublet
Overlap geneDpys, Lrp12
Upstream geneBaalc, TOB3L, Fzd6, LOC636952, Cthrc1, Slc25a32, Wdsof1, LOC671215, Rims2, Tm7sf4
Downstream geneLOC100039130, LOC670013, LOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035O11.bB6Ng01-035O11.g
ACCDH864248DH864249
length958712
definitionDH864248|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O11, 5' end.DH864249|Mus musculus domesticus DNA, BAC clone: B6Ng01-035O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,644,485 - 39,645,453)(39,792,632 - 39,793,337)
sequence
gaattcacacttggaataaatccccagtgatggcatggttagtcaaggga
cctctcctctgtaaaataaataaataaataaacaaacaaacaaacaaaca
ggaaaaaatgaacatagcaaacaaaaatcttaaattgtaaattttggtgt
ctcgttcaagccattgggaaaacaagcaagcaaacaaacaaaaggccttt
ccctaaaatacttaatctccaactctcactgccatgtgaccatttcttag
agggagtggtctgtgtttgctgggctttctccaaagcctcttgtaggcag
ccatgactcatcctgcacactgcaagtataaggtccctaggattcccatt
aagtactgccatcaaatttccctcagtcccgttgaactcctttttgtttc
ctctgtaacctagaacctgtgttgtcagggtgactagctagaactaagag
tggaataagccaccataatgcacaggccggtgatgactctctagccattg
actgtagaacgtggcttttatcagggcagccttagagatgacaacagaaa
cgcctggtattcatttcttcttctttttttttaactgaaagggaaaaact
ataaaatgtagaccttgagatgggtccaagagctggtaaacaatgttcca
gaggggagaacatacacacacacacacacacacacacccacacactccta
aaacacatatttacttttagtagtccaagggctactaaaacctgggttca
ttcactcagcaataattattgataattttcctggaactgtcctggcgacg
aggccaaaggaagccctgaaaacaccaggtggcactgggtgggaagaaac
gagacagtagcttagctgagctgtgctcttacccagcctctctgggacct
atgctttggcctggttttatgctgacacaaccctgctgctctggcaaaga
cctctcag
gaattccaacactcatcttctctacactctgacttggggtataatatctc
atgaacggcttaatcaactccctaaatattatttctcctccaattgctaa
gtactcagaatagatacattttaacagttttcccactaacgtactgatgc
aattataggtatgctgtatcccccatatatgtacacaaacagaacacatt
aaatatattgtataggctgaagagatgtctcagcacctaagagaactggc
tgctatcacagtggacttggttttaactcttagcatctacatggtcactc
ataactgttctagttatggggatccagggagtccaacacctacttctggc
ctctacaaaacacaaaattcacacatagtgcacatatattcatgcaggca
aatatataagatgaaaacaaataaatttttaaatgtatttattagtgcat
tcactaaaacaaataagtatatttacagaatgttctaattatggtttatt
gctatgaagagacaccatgatcatggcaacatttataaaggaaaaatatt
taaattggggcttgcttacagttcagaggtttagtccattatcatcatgg
taggaagcatgggtggtggtatggcagtgtaatgggctaaagagatagct
ggagagttctacatcttggatccaaagacagcaagaagtatcagttacac
attgtccaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_39644485_39645453
seq2: B6Ng01-035O11.b_48_1005

seq1  GAATTCACACTTGGAATAAATCCCCAGTGATGGCATGGTTAGTCAAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTTGGAATAAATCCCCAGTGATGGCATGGTTAGTCAAGGGA  50

seq1  CCTCTCCTCTGTAAAATAAATAAATAAATAAACAAACAAACAAACAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTCTGTAAAATAAATAAATAAATAAACAAACAAACAAACAAACA  100

seq1  GGAAAAAATGAACATAGCAAACAAAAATCTTAAATTGTAAATTTTGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATGAACATAGCAAACAAAAATCTTAAATTGTAAATTTTGGTGT  150

seq1  CTCGTTCAAGCCATTGGGAAAACAAGCAAGCAAACAAACAAAAGGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTCAAGCCATTGGGAAAACAAGCAAGCAAACAAACAAAAGGCCTTT  200

seq1  CCCTAAAATACTTAATCTCCAACTCTCACTGCCATGTGACCATTTCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAAATACTTAATCTCCAACTCTCACTGCCATGTGACCATTTCTTAG  250

seq1  AGGGAGTGGTCTGTGTTTGCTGGGCTTTCTCCAAAGCCTCTTGTAGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGGTCTGTGTTTGCTGGGCTTTCTCCAAAGCCTCTTGTAGGCAG  300

seq1  CCATGACTCATCCTGCACACTGCAAGTATAAGGTCCCTAGGATTCCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACTCATCCTGCACACTGCAAGTATAAGGTCCCTAGGATTCCCATT  350

seq1  AAGTACTGCCATCAAATTTCCCTCAGTCCCGTTGAACTCCTTTTTGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTGCCATCAAATTTCCCTCAGTCCCGTTGAACTCCTTTTTGTTTC  400

seq1  CTCTGTAACCTAGAACCTGTGTTGTCAGGGTGACTAGCTAGAACTAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAACCTAGAACCTGTGTTGTCAGGGTGACTAGCTAGAACTAAGAG  450

seq1  TGGAATAAGCCACCATAATGCACAGGCCGGTGATGACTCTCTAGCCATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAGCCACCATAATGCACAGGCCGGTGATGACTCTCTAGCCATTG  500

seq1  ACTGTAGAACGTGGCTTTTATCAGGGCAGCCTTAGAGATGACAACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGAACGTGGCTTTTATCAGGGCAGCCTTAGAGATGACAACAGAAA  550

seq1  CGCCTGGTATTCATTTCTTCTTCTTTTTTTTTAACTGAAAGGGAAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTGGTATTCATTTCTTCTTCTTTTTTTTTAACTGAAAGGGAAAAACT  600

seq1  ATAAAATGTAGACCTTGAGATGGGTCCAAGAGCTGGTAAACAATGTT-CA  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAAAATGTAGACCTTGAGATGGGTCCAAGAGCTGGTAAACAATGTTCCA  650

seq1  GAGGGGAGAACATACACACACACACACACACACACACACACACACTCCTA  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGGGGAGAACATACACACACACACACACACACACACCCACACACTCCTA  700

seq1  AAAGCACATATTTACTTTTAGTAGTCCAA-GGCTACTAAAACCT-GGTTC  747
      ||| ||||||||||||||||||||||||| |||||||||||||| |||||
seq2  AAA-CACATATTTACTTTTAGTAGTCCAAGGGCTACTAAAACCTGGGTTC  749

seq1  ATTCACTCAGCAAATAATTATTGATTATTTTCCTGGAACTGTCCTGGCGA  797
      ||||||||||| ||||||||||||| ||||||||||||||||||||||||
seq2  ATTCACTCAGC-AATAATTATTGATAATTTTCCTGGAACTGTCCTGGCGA  798

seq1  CGAGGCCAAAAGGAAGCCCTGAAAACACCAGTGTGCACTGGGTGGGAAGG  847
      ||||||| |||||||||||||||||||||||   |||||||||||||| |
seq2  CGAGGCC-AAAGGAAGCCCTGAAAACACCAGGTGGCACTGGGTGGGAA-G  846

seq1  AAACGAGACAGTAGCTTAGCTGAGCTTGTGCCTCTTACACAGCCTCTCTT  897
      ||||||||||||||||||||||||| |||| ||||||| |||||||||| 
seq2  AAACGAGACAGTAGCTTAGCTGAGC-TGTG-CTCTTACCCAGCCTCTCTG  894

seq1  GGACCTTATGCTTTGGCCTGGTTTTAATGCTGAACACAAACCCTGCTTGC  947
      ||||| ||||||||||||||||||| |||||| |||| |||||||| |||
seq2  GGACC-TATGCTTTGGCCTGGTTTT-ATGCTG-ACAC-AACCCTGC-TGC  939

seq1  TCTGGCAAAGAGAACCTCTCAG  969
      ||||||||||   |||||||||
seq2  TCTGGCAAAG---ACCTCTCAG  958

seq1: chr15_39792632_39793337
seq2: B6Ng01-035O11.g_69_780 (reverse)

seq1  AGCCTGGACAATGTGTAACTGATACTTCTTGCTGTCTTTGGAT-CAAGAT  49
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGCCTGGACAATGTGTAACTGATACTTCTTGCTGTCTTTGGATCCAAGAT  50

seq1  GTAGAACTCT-CAGCTATCTCTTTAG-CCATTACACTGCCTATA-CACCA  96
      |||||||||| ||||||||||||||| ||||||||||||| ||| |||||
seq2  GTAGAACTCTCCAGCTATCTCTTTAGCCCATTACACTGCC-ATACCACCA  99

seq1  -CCATGCTTCCTACCATGATGATAATGGACTAAACCTCTGAACTGTAAGC  145
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCTTCCTACCATGATGATAATGGACTAAACCTCTGAACTGTAAGC  149

seq1  AAGCCCCAA-TTAAATA-TTTTCCTTTATAAATGTTGCCATGATCATGGT  193
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  AAGCCCCAATTTAAATATTTTTCCTTTATAAATGTTGCCATGATCATGGT  199

seq1  GTCTCTTCATAGCAATAAACCATAATTAGAACATTCTGTAAATATACTTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTCATAGCAATAAACCATAATTAGAACATTCTGTAAATATACTTA  249

seq1  TTTGTTTTAGTGAATGCACTAATAAATACATTTAAAAATTTATTTGTTTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTAGTGAATGCACTAATAAATACATTTAAAAATTTATTTGTTTT  299

seq1  CATCTTATATATTTGCCTGCATGAATATATGTGCACTATGTGTGAATTTT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATATATTTGCCTGCATGAATATATGTGCACTATGTGTGAATTTT  349

seq1  GTGTTTTGTAGAGGCCAGAAGTAGGTGTTGGACTCCCTGGATCCCCATAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTAGAGGCCAGAAGTAGGTGTTGGACTCCCTGGATCCCCATAA  399

seq1  CTAGAACAGTTATGAGTGACCATGTAGATGCTAAGAGTTAAAACCAAGTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAGTTATGAGTGACCATGTAGATGCTAAGAGTTAAAACCAAGTC  449

seq1  CACTGTGATAGCAGCCAGTTCTCTTAGGTGCTGAGACATCTCTTCAGCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGATAGCAGCCAGTTCTCTTAGGTGCTGAGACATCTCTTCAGCCT  499

seq1  ATACAATATATTTAATGTGTTCTGTTTGTGTACATATATGGGGGATACAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATATATTTAATGTGTTCTGTTTGTGTACATATATGGGGGATACAG  549

seq1  CATACCTATAATTGCATCAGTACGTTAGTGGGAAAACTGTTAAAATGTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCTATAATTGCATCAGTACGTTAGTGGGAAAACTGTTAAAATGTAT  599

seq1  CTATTCTGAGTACTTAGCAATTGGAGGAGAAATAATATTTAGGGAGTTGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCTGAGTACTTAGCAATTGGAGGAGAAATAATATTTAGGGAGTTGA  649

seq1  TTAAGCCGTTCATGAGATATTATACCCCAAGTCAGAGTGTAGAGAAGATG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCGTTCATGAGATATTATACCCCAAGTCAGAGTGTAGAGAAGATG  699

seq1  AGTGTTGGAATTC  706
      |||||||||||||
seq2  AGTGTTGGAATTC  712