BAC Information

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BAC

Clone NameB6Ng01-036A16
Chromosome10 (Build37)15 (Build37)
Map Location 104,053,903 - 104,054,36310,427,926 - 10,428,878
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036A16.bB6Ng01-036A16.g
ACCDH864345DH864346
length817949
definitionDH864345|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A16, 5' end.DH864346|Mus musculus domesticus DNA, BAC clone: B6Ng01-036A16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(104,053,903 - 104,054,363)(10,427,926 - 10,428,878)
sequence
gaattctcacctgaggaatagtgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaattgctaagatcataaattcaggtgacag
cagatgctggcaaggatgtggagaaagaggaacactcctccattgttggt
gagattgcaagcttgtataaccactctggaaatcagtctggtggttcttc
agaaatctggacaaggtactactggaggatcctgcaatacctctcctggg
tatatatccagaagatgttccaactagtaagaaagacacgtgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatgtgatacatttacacaat
ggattactactcagctattaaaaataatgaatttatgaaattcctaggca
aatggatggacctggagggcatcatcctgagtgaggtaacacaatcacaa
aggaactcacacaatatgtactcactgataagtggatattagcccaaaac
ctaggatacccaagatataagatacaaattgctaaacgtatgaaactcaa
gaagaatgaagaccaaagtgtggacactttaccccttcttagaattggga
acaaaacacccatggaaagagttacagagacaaagtttggagctgttgac
gaaaggatggaccatttagagactggccatgtccagggttccatcacata
ataagcttccaaaagct
gaattcaaagactttgtctttgggaaacttagtgtctcgctaccaagtac
cctttcaattagtactcacagaacatttccgttctttattcaagaactaa
cttgttcagcctgtaaaatccagtaatcatacaattccaagtgataggaa
gtgatgagcagtgtttggctgtggccagagcacacatataccatttcata
tcaaggctagcccacagactggttggttttctctgggctgctgccatctt
ttccccagaatgccttagtctggcagtcagaatcaaagtccccaggtgca
gtcctgactctgcttttttatcattgattgtttgctggttactcggcttg
tcattgttagcttcagtcccgcctggagatggaacttctgctctcatcca
gaagttctgattgcctcaagtagcatcggaagagttgtctccacttccat
atagtggtttattgtggggagcgggtgtggcggcagtcccaaaggcgcca
gggactgcagctaagtcatatgacttgcacctgacttcctcatataagac
acaaaacatcttgagtgctgcgcaggtgtaccaggatacaggtgaatcca
atttggtggagattttgcccctgctgcactgattagctgaagcctcgtga
ctggcgagggggcgtggcctgcggtgcgtggatgagagagagtataaaag
gagtgagaggcccagggtcgggggagatataaacaagaagaatcaggact
tgaataaactggttgttagaaggactggtggtcgcgtccttccttgctgg
tccagagcgggcgccgacagtttattggatttgggaaagaagagacccaa
cccatggtggtacttgtgtgttagaggtaagatatttcacacttatatct
tattgcttgtgacttcaagaaacaatagaaatgctgagttaacgttacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_104053903_104054363
seq2: B6Ng01-036A16.b_43_514 (reverse)

seq1  TTTAATAGC----------TCCATTGTGTAAATGTACCACATTTTCTGTA  40
      |||||||||          ||||||||||||||||| |||||||||||||
seq2  TTTAATAGCTGAGTAGTAATCCATTGTGTAAATGTATCACATTTTCTGTA  50

seq1  TCTATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATT  90
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATT  100

seq1  ATAAATAAGGCTGCTATGAATATAGTGGAGCATGTGTCCTTCTTACCGGT  140
      |||||||||||||||||||| ||||||||||| ||||| |||||||  ||
seq2  ATAAATAAGGCTGCTATGAACATAGTGGAGCACGTGTCTTTCTTACTAGT  150

seq1  TGGGGCATCTTCTGGATATATGCCCAGAAGAGGTATTGCTGGATCCTCCG  190
      |||  |||||||||||||||| ||||| ||||||||||| ||||||||| 
seq2  TGGAACATCTTCTGGATATATACCCAGGAGAGGTATTGCAGGATCCTCCA  200

seq1  GTAGTACTATGTCCAATTTTCTGACGAACCGCCAGACGGATTTCCAGAGT  240
      |||||||  ||||||  ||||||| ||||| |||||| ||||||||||||
seq2  GTAGTACCTTGTCCAGATTTCTGAAGAACCACCAGACTGATTTCCAGAGT  250

seq1  GGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTC  290
      |||| ||||||| ||||||| |||||||||||||||||||||||||||||
seq2  GGTTATACAAGCTTGCAATCTCACCAACAATGGAGGAGTGTTCCTCTTTC  300

seq1  TCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTTTTGATCTTAGCCA  340
      |||||||||| |||||||||||||||||||||||||| |||||||||| |
seq2  TCCACATCCTTGCCAGCATCTGCTGTCACCTGAATTTATGATCTTAGCAA  350

seq1  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGACTGGTGTGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCC  400

seq1  CTGATGATTAAGGATGTTGAACA-TTTTTTCAGGTGCTTCTCTGCCATTC  439
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGATGATTAAGGATGTTGAACATTTTTTTCAGGTGCTTCTCTGCCATTC  450

seq1  GGTATTCCTCAGGTGAGAATTC  461
        ||||||||||||||||||||
seq2  ACTATTCCTCAGGTGAGAATTC  472

seq1: chr15_10427926_10428878
seq2: B6Ng01-036A16.g_67_1015 (reverse)

seq1  GGTTACGTTATACTCAGCATTTCTACTGTTTCTTTGAGTTCACAAAGCAA  50
      ||| |||||| |||||||||||||| |||||| ||||  |||| ||||||
seq2  GGTAACGTTA-ACTCAGCATTTCTATTGTTTC-TTGAAGTCAC-AAGCAA  47

seq1  TAAGATTTTAAGTTGGTGAAACTACTCTTACCTCTAAACACACAGTTACC  100
      ||||| | |||||  |||||| || |||||||||| ||||||||  ||||
seq2  TAAGA-TATAAGT--GTGAAA-TA-TCTTACCTCT-AACACACAAGTACC  91

seq1  ACAGTGGTTTGTGTCTCTATCTTTCCCAAATCC-ATAAACTGTC-GCGCC  148
      ||  ||| ||| |||||| |||||||||||||| |||||||||| |||||
seq2  ACCATGGGTTGGGTCTCT-TCTTTCCCAAATCCAATAAACTGTCGGCGCC  140

seq1  CGCTCTCGACCAGCAA-GAACGACGCGACCACCAGTCCTTCTAAC-AGCA  196
      |||||| ||||||||| ||| |||||||||||||||||||||||| | ||
seq2  CGCTCTGGACCAGCAAGGAAGGACGCGACCACCAGTCCTTCTAACAACCA  190

seq1  GTTTATTC-AGTCCTGATTCTTCTTGTTTATATCTCCCCCGAACCCTGGG  245
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  GTTTATTCAAGTCCTGATTCTTCTTGTTTATATCTCCCCCG-ACCCTGGG  239

seq1  CCTCTCACTCCTTTTATACTCTCTCTCATCCACGCACCGCAGGCCACGCC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCACTCCTTTTATACTCTCTCTCATCCACGCACCGCAGGCCACGCC  289

seq1  CCCTCGCCAGTCACGAGGCTTCAGCTAATCAGTGCAGCAGGGGC-AAATC  344
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCTCGCCAGTCACGAGGCTTCAGCTAATCAGTGCAGCAGGGGCAAAATC  339

seq1  TCCACCAAATTGGATTCACCTGTATCCTGGTACACCTGCGCAGCACTCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAAATTGGATTCACCTGTATCCTGGTACACCTGCGCAGCACTCAA  389

seq1  GATG-TTTGTGTCTTATATGAGGAAGTCAGGTGCAAGTCATATGACTTAG  443
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTGTGTCTTATATGAGGAAGTCAGGTGCAAGTCATATGACTTAG  439

seq1  CTGCAGTCCCTGGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCCCTGGCGCCTTTGGGACTGCCGCCACACCCGCTCCCCACAAT  489

seq1  AAACCACTATATGGAAGTGGAGACAACTCTTCCGATGCTACTTGAGGCAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCACTATATGGAAGTGGAGACAACTCTTCCGATGCTACTTGAGGCAA  539

seq1  TCAGAACTTCTGGATGAGAGCAGAAGTTCCATCTCCAGGCGGGACTGAAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACTTCTGGATGAGAGCAGAAGTTCCATCTCCAGGCGGGACTGAAG  589

seq1  CTAACAATGACAAGCCGAGTAACCAGCAAACAATCAATGATAAAAAAGCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATGACAAGCCGAGTAACCAGCAAACAATCAATGATAAAAAAGCA  639

seq1  GAGTCAGGACTGCACCTGGGGACTTTGATTCTGACTGCCAGACTAAGGCA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGACTGCACCTGGGGACTTTGATTCTGACTGCCAGACTAAGGCA  689

seq1  TTCTGGGGAAAAGATGGCAGCAGCCCAGAGAAAACCAACCAGTCTGTGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGGAAAAGATGGCAGCAGCCCAGAGAAAACCAACCAGTCTGTGGG  739

seq1  CTAGCCTTGATATGAAATGGTATATGTGTGCTCTGGCCACAGCCAAACAC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTGATATGAAATGGTATATGTGTGCTCTGGCCACAGCCAAACAC  789

seq1  TGCTCATCACTTCCTATCACTTGGAATTGTATGATTACTGGATTTTACAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCACTTCCTATCACTTGGAATTGTATGATTACTGGATTTTACAG  839

seq1  GCTGAACAAGTTAGTTCTTGAATAAAGAACGGAAATGTTCTGTGAGTACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACAAGTTAGTTCTTGAATAAAGAACGGAAATGTTCTGTGAGTACT  889

seq1  AATTGAAAGGGTACTTGGTAGCGAGACACTAAGTTTCCCAAAGACAAAGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAAAGGGTACTTGGTAGCGAGACACTAAGTTTCCCAAAGACAAAGT  939

seq1  CTTTGAATTC  953
      ||||||||||
seq2  CTTTGAATTC  949