BAC Information

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BAC

Clone NameB6Ng01-037E19
Chromosome15 (Build37)
Map Location 21,099,275 - 21,167,319
singlet/doubletdoublet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037E19.bB6Ng01-037E19.g
ACCDH865218DH865219
length9401,020
definitionDH865218|Mus musculus domesticus DNA, BAC clone: B6Ng01-037E19, 5' end.DH865219|Mus musculus domesticus DNA, BAC clone: B6Ng01-037E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,099,275 - 21,100,219)(21,166,286 - 21,167,319)
sequence
gaattccatttaaggaatgatgcaatgaaaatggaagtgaaaggcaggag
acgacatgaaacatgatttattgtgtaaaatcatcactgcagaaggaagg
aataatgacagagaatgagagtagaagacaatttagaagtaaattctatt
aatgtagtaattcaggtgagagaataatgatttgccctggtttcagaatg
agcaatcggagggatagactctcgacgcttccaaatgaagtcaatagata
tagctgatggagtcattatttcatgagcagtaatgggaagaaaatcaata
aatgttaaggacaattgaaagaaagttcagaattattcaatgattttagc
aagtcaaaagaaagataaaatgatgttaggaagagcacataattaaagga
gaaataataaagcttaccatacattactttataaagccagtgaacataat
ggaaaaatagattgggatagtaataagatatttattttcctcactgtagt
atgtaattagtttttctaagaatatagatcaatgggtctcaatttactta
atactgagatcttataattctgagttctttatgctgtggttacttccaat
gggaaaaatatttttcattgctatttaataactataattttctactttta
tgaatcataatgtaaatacctgacatttagaatatctgatatgtaacccc
atcagacatgcaaagatttacttatacataattttaaattattgtagcaa
tttaaatcataacatagtgaatattcatacataaacacctttttatcaac
agttgtcatttattgatttatttattcactcatatttaaggaattaagca
ggatcatgtgtgtcactgttacaagcaaataagaggaagggtttattatt
gtctctgtgaattacagctcatagtggcatagtcatgtac
gaattcacacattgatgctttggaagtttctggtttatgacattccatct
aaggagacctacaaaatagataaacaaacatacattaattgtatgaaacc
tcagggtgactttcatacaaaatattgttacatctgctaatgtttataaa
aacagaaagaattctaaattaattacttggtgtatggttgatcctcttca
acctattacagtttgaattaattaccttaaattttaggcacacttaaaat
tttccattacaatgaagaaaagggtgtactttaaacaagattaatataat
ttatacttattggtcaccctaaagaggaaagaaaataatcttataagaat
gaatttctgagttagagtagcatttgcagttcatccttctacatggggat
cattgtttacagaaacacagtaactattctgtgagtttgaaatttaaagc
acctcaagtgttcctgctagtaggcaacagacatggtccatgtattttcc
taacaaggaatgataatgaaaaaggtcttcaagcattcacaagatgtttt
ggtcatggctaaatagacaaaggttgaaaacagacaattgagataaaaaa
gttaaatactcttaaagttgaaaattgaaaagattattccatcaagtttg
aagataaatcaaaaacaaacaaacaaaaaaaaaagaatggtatttctgca
atggaaataattaacaggttacactatatatatatatatatatatatata
tatatataagtttttctattctttggaaaccaaaaccattgaatgtatgg
gaattattttatataaattgcatgtctacacagaaaataaagtccgtaga
attatgcatttaagtgcaaggagcttgtaccttttatcatagtaagcatt
ttgagtaataggaattgtttccgtagtaaataactgggggaatttaggac
agtggtttataacccgaattcttctgaagattctcgggacatctgcctga
acctccggtttaggggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_21099275_21100219
seq2: B6Ng01-037E19.b_44_983

seq1  GAATTCCATTTAAGGAATGATGCAATGAAAATGGAAGTGAAAGGCAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTAAGGAATGATGCAATGAAAATGGAAGTGAAAGGCAGGAG  50

seq1  ACGACATGAAACATGATTTATTGTGTAAAATCATCACTGCAGAAGGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACATGAAACATGATTTATTGTGTAAAATCATCACTGCAGAAGGAAGG  100

seq1  AATAATGACAGAGAATGAGAGTAGAAGACAATTTAGAAGTAAATTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGACAGAGAATGAGAGTAGAAGACAATTTAGAAGTAAATTCTATT  150

seq1  AATGTAGTAATTCAGGTGAGAGAATAATGATTTGCCCTGGTTTCAGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTAATTCAGGTGAGAGAATAATGATTTGCCCTGGTTTCAGAATG  200

seq1  AGCAATCGGAGGGATAGACTCTCGACGCTTCCAAATGAAGTCAATAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCGGAGGGATAGACTCTCGACGCTTCCAAATGAAGTCAATAGATA  250

seq1  TAGCTGATGGAGTCATTATTTCATGAGCAGTAATGGGAAGAAAATCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATGGAGTCATTATTTCATGAGCAGTAATGGGAAGAAAATCAATA  300

seq1  AATGTTAAGGACAATTGAAAGAAAGTTCAGAATTATTCAATGATTTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAGGACAATTGAAAGAAAGTTCAGAATTATTCAATGATTTTAGC  350

seq1  AAGTCAAAAGAAAGATAAAATGATGTTAGGAAGAGCACATAATTAAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAAAGAAAGATAAAATGATGTTAGGAAGAGCACATAATTAAAGGA  400

seq1  GAAATAATAAAGCTTACCATACATTACTTTATAAAGCCAGTGAACATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAATAAAGCTTACCATACATTACTTTATAAAGCCAGTGAACATAAT  450

seq1  GGAAAAATAGATTGGGATAGTAATAAGATATTTATTTTCCTCACTGTAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATAGATTGGGATAGTAATAAGATATTTATTTTCCTCACTGTAGT  500

seq1  ATGTAATTAGTTTTTCTAAGAATATAGATCAATGGGTCTCAATTTACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTAGTTTTTCTAAGAATATAGATCAATGGGTCTCAATTTACTTA  550

seq1  ATACTGAGATCTTATAATTCTGAGTTCTTTATGCTGTGGTTACTTCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGATCTTATAATTCTGAGTTCTTTATGCTGTGGTTACTTCCAAT  600

seq1  GGGAAAAATA-TTTTCATTGCTATTTAATAACTATAATTTTCTACTTTTA  649
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAATATTTTTCATTGCTATTTAATAACTATAATTTTCTACTTTTA  650

seq1  TGAATCATAATGTAAATACCTGACATTTAGAATATCTGATATGTAACCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATAATGTAAATACCTGACATTTAGAATATCTGATATGTAACCCC  700

seq1  ATCAGACATGCAAAGAATTACTTATACATAA-TTTAAATTATTGTAGCAA  748
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  ATCAGACATGCAAAGATTTACTTATACATAATTTTAAATTATTGTAGCAA  750

seq1  -TTAAATCATAACATAGTGAATATTCATACATAAACACC-TTTTATCAAC  796
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTAAATCATAACATAGTGAATATTCATACATAAACACCTTTTTATCAAC  800

seq1  AGGTTGTCATTTATTGATTTATTTATTCACTCATATTTAAGGAATTTAAG  846
      | |||||||||||||||||||||||||||||||||||||||||| |||||
seq2  A-GTTGTCATTTATTGATTTATTTATTCACTCATATTTAAGGAA-TTAAG  848

seq1  CAGGATTCATGTGTGTCACTGTTACAAAGCAAATAAGGAAGGAAGGGTTT  896
      ||||| ||||||||||||||||||| |||||||||||  |||||||||||
seq2  CAGGA-TCATGTGTGTCACTGTTAC-AAGCAAATAAG--AGGAAGGGTTT  894

seq1  AATATGGTCTCTGTTGAAATTACAGCTCATAGTGGCAGAGTCAATGTAC  945
      | ||| ||||||||   |||||||||||||||||||| |||| ||||||
seq2  ATTATTGTCTCTGT--GAATTACAGCTCATAGTGGCATAGTC-ATGTAC  940

seq1: chr15_21166286_21167319
seq2: B6Ng01-037E19.g_66_1085 (reverse)

seq1  CCTTCCCCCTAACACTGAGGTTACAGGACAGATGTGCCACGAGAATCTTC  50
      |||| |||||||  | |||||| |||| |||||||  | |||||||||||
seq2  CCTT-CCCCTAAACCGGAGGTT-CAGG-CAGATGT--CCCGAGAATCTTC  45

seq1  ATGAAGGACTCGGGGTTATAAACACTTGTCCTTATACTCACCCAGTTAAT  100
      | |||| | || |||||||||||   ||||| || | || ||||||||  
seq2  A-GAAGAATTC-GGGTTATAAACCACTGTCC-TAAATTCCCCCAGTTA--  90

seq1  TTTACTTACGAAACATTTCCTATTACTCAAAATGCTTACTATGATAAAAG  150
      ||||||   |||||| ||||||||||||||||||||||||||||||||||
seq2  TTTACTACGGAAACAATTCCTATTACTCAAAATGCTTACTATGATAAAAG  140

seq1  GATACAAGCTCCTTGCACTTAAATGCATAATTCTACGGGACTTTATTTTT  200
      | |||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  G-TACAAGCTCCTTGCACTTAAATGCATAATTCTAC-GGACTTTA-TTTT  187

seq1  CTGTGTTAGACATGCAATTTATATAAAATAATTCCCATACATTCAATGGT  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTG-TAGACATGCAATTTATATAAAATAATTCCCATACATTCAATGGT  236

seq1  TTTGGTTTACAAAGAATAGAAAAACTTATATATATATATATATATATATA  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTCCAAAGAATAGAAAAACTTATATATATATATATATATATATA  286

seq1  TATATATATAGTGTAACCTGTTAATTATTTCCATTGCAGAAATACCATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATAGTGTAACCTGTTAATTATTTCCATTGCAGAAATACCATTC  336

seq1  TTTTTTTTTTGTTTGTTTGTTTTTGATTTATCTTCAAACTTGATGGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTTTGTTTGTTTTTGATTTATCTTCAAACTTGATGGAATA  386

seq1  ATCTTTTCAATTTTCAACTTTAAGAGTATTTAACTTTTTTATCTCAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCAATTTTCAACTTTAAGAGTATTTAACTTTTTTATCTCAATTG  436

seq1  TCTGTTTTCAACCTTTGTCTATTTAGCCATGACCAAAACATCTTGTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCAACCTTTGTCTATTTAGCCATGACCAAAACATCTTGTGAAT  486

seq1  GCTTGAAGACCTTTTTCATTATCATTCCTTGTTAGGAAAATACATGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGACCTTTTTCATTATCATTCCTTGTTAGGAAAATACATGGACC  536

seq1  ATGTCTGTTGCCTACTAGCAGGAACACTTGAGGTGCTTTAAATTTCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTGCCTACTAGCAGGAACACTTGAGGTGCTTTAAATTTCAAAC  586

seq1  TCACAGAATAGTTACTGTGTTTCTGTAAACAATGATCCCCATGTAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAATAGTTACTGTGTTTCTGTAAACAATGATCCCCATGTAGAAGG  636

seq1  ATGAACTGCAAATGCTACTCTAACTCAGAAATTCATTCTTATAAGATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTGCAAATGCTACTCTAACTCAGAAATTCATTCTTATAAGATTAT  686

seq1  TTTCTTTCCTCTTTAGGGTGACCAATAAGTATAAATTATATTAATCTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCTCTTTAGGGTGACCAATAAGTATAAATTATATTAATCTTGT  736

seq1  TTAAAGTACACCCTTTTCTTCATTGTAATGGAAAATTTTAAGTGTGCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTACACCCTTTTCTTCATTGTAATGGAAAATTTTAAGTGTGCCTA  786

seq1  AAATTTAAGGTAATTAATTCAAACTGTAATAGGTTGAAGAGGATCAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAGGTAATTAATTCAAACTGTAATAGGTTGAAGAGGATCAACCA  836

seq1  TACACCAAGTAATTAATTTAGAATTCTTTCTGTTTTTATAAACATTAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCAAGTAATTAATTTAGAATTCTTTCTGTTTTTATAAACATTAGCA  886

seq1  GATGTAACAATATTTTGTATGAAAGTCACCCTGAGGTTTCATACAATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAACAATATTTTGTATGAAAGTCACCCTGAGGTTTCATACAATTAA  936

seq1  TGTATGTTTGTTTATCTATTTTGTAGGTCTCCTTAGATGGAATGTCATAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTTGTTTATCTATTTTGTAGGTCTCCTTAGATGGAATGTCATAA  986

seq1  ACCAGAAACTTCCAAAGCATCAATGTGTGAATTC  1034
      ||||||||||||||||||||||||||||||||||
seq2  ACCAGAAACTTCCAAAGCATCAATGTGTGAATTC  1020