BAC Information

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BAC

Clone NameB6Ng01-037H11
Chromosome15 (Build37)3 (Build37)
Map Location 75,406,739 - 75,407,41541,059,087 - 41,059,611
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092, Ly6f, LOC100041652, LOC100041107, 9030619P08Rik, Ly6h
Downstream geneGpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269, Oplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037H11.bB6Ng01-037H11.g
ACCDH865319DH865320
length677665
definitionDH865319|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H11, 5' end.DH865320|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,406,739 - 75,407,415)(41,059,087 - 41,059,611)
sequence
gaattcactatgtagcccgggctagcctggaactcaatatgttgcccaga
taaccttaaccgtacgacaatcctcctgccatagtcttccaagtagtcaa
aggtgtcagcagggccacactctaagtgtctaaagaatcttccccaccat
tctaggcttggctcatgggtcacatggaatcctcatgccctgggtgtgag
ccactgcaataggaccatcttctgtgagccaagcatattctgaaattgtt
tggagggatcctggcagccctggccaaagcagcaaactttgcagcatgcc
tcagctggccctccacccctcatccctgttatccgatctcttctctctag
ctctggcattcctgagccctgggcagctaatggcctacagattatgatgc
tggcactgtccctggttctgacattagtgctgagaggcaactccggtcct
ttgtataaaaaagaggtctaggaatctgaagtttgttgagacaactgaac
tgttgagagcacttggtgatttatagggagccaggatttgattctcggca
cccacatggtgcctcacaatcatctcaaactacagtctcagtgaacctaa
tgtcttcttcttacctctgtgggcgcacttgtgatcccagcacaggggag
gctgagtcaaggatccctaaggccagc
gaattcattgtctagttctgtatctgattttttaatggggttatttgatt
ttttggtgtccatcttcttgagttctttatatatattggatattagaccc
ctatctgatttaggattgataaagaccctctcccaatctgttggtggcct
ttttgtcttattgacagtgtcctttgccttacagaaactttgcaatttta
tgaggtcccatttgtcaattctcaatcttacagcacaagctattgctgtt
ctgtttaggaatttttaccctgtgcccatatcttcaaggcttttctccac
tttctcctctataagtttcactctctctggttttatgtggcattcattga
tccacttagactagagctttgtacaaggatataagaatggatcaattcgc
attcttctataataagtgccagttgtgccagcaacatttgttgaaaattc
tgtcttttttccactggatggtttttgctcccttgtcaaagatcaagtga
ccataggtgtgtgggttcatttctgggtcttcgattctattccattgatc
tacctgtctgtcactgtaccgtaccatgcagtttttatctcaattgctct
gtagtacagctttaggtcaggcaggtgattccaccagaggttcttttatt
gttgacaatagtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_75406739_75407415
seq2: B6Ng01-037H11.b_41_717 (reverse)

seq1  GCTGGCCTTAGGGATCCTTGACTCAGCCTCCCCTGTGCTGGGATCACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTTAGGGATCCTTGACTCAGCCTCCCCTGTGCTGGGATCACAAG  50

seq1  TGCGCCCACAGAGGTTAGAAGAGGACATTAGGTTCCCTGAGACTGGAGTT  100
      ||||||||||||||| |||||| |||||||||||| ||||||||| ||||
seq2  TGCGCCCACAGAGGTAAGAAGAAGACATTAGGTTCACTGAGACTGTAGTT  100

seq1  AGAGATGATTGTGAGGCACCATGTGGGTGCCGAGAATCAAATCCTGGCTC  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGATTGTGAGGCACCATGTGGGTGCCGAGAATCAAATCCTGGCTC  150

seq1  CCTATAAATCAACAAGTGCTCTCAACAGTTCAGTTGTCTCAACAAACTTC  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTATAAATCACCAAGTGCTCTCAACAGTTCAGTTGTCTCAACAAACTTC  200

seq1  AGATTCCTAGACCTCTTTTTTATACAAAGGACCGGAGTTGCCTCTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTAGACCTCTTTTTTATACAAAGGACCGGAGTTGCCTCTCAGCA  250

seq1  CTAATGTCAGAACCAGGGACAGTGCCAGCATCCTAATCTGTAGGCCATTA  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTAATGTCAGAACCAGGGACAGTGCCAGCATCATAATCTGTAGGCCATTA  300

seq1  GCTGCCCAGGGCTCAGGAATGCCAGAGCTAGAGAGAAGAGATCGGATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCAGGGCTCAGGAATGCCAGAGCTAGAGAGAAGAGATCGGATAAC  350

seq1  AGGGATGAGGGGTGGAGGGCCAGCTGAGGCATGCTGCAAAGTTTGCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGAGGGGTGGAGGGCCAGCTGAGGCATGCTGCAAAGTTTGCTGCT  400

seq1  TTGGCCAGGGCTGCCAGGATCCCTCCAAACAATTACAGAATATGCTTGGC  450
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGGCCAGGGCTGCCAGGATCCCTCCAAACAATTTCAGAATATGCTTGGC  450

seq1  TCACAGAAGATGGTCCTATTGCAGTGGCTCACACCCAGGGCATGAGGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAAGATGGTCCTATTGCAGTGGCTCACACCCAGGGCATGAGGATT  500

seq1  CCATGTGACCCATGAGCCAAGCCTAGAATGGTGGGGAAGATTCTCTAGAC  550
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCATGTGACCCATGAGCCAAGCCTAGAATGGTGGGGAAGATTCTTTAGAC  550

seq1  ACTTAGAGTGTGGCCCTGCTGACACCTTTGACTACTTGGAAGACTATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGAGTGTGGCCCTGCTGACACCTTTGACTACTTGGAAGACTATGGC  600

seq1  AGGAGGATTGTCGTACGGTTAAGGTTATCTGGGCAACATATTGAGTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATTGTCGTACGGTTAAGGTTATCTGGGCAACATATTGAGTTCCA  650

seq1  GGCTAGCCCGGGCTACATAGTGAATTC  677
      |||||||||||||||||||||||||||
seq2  GGCTAGCCCGGGCTACATAGTGAATTC  677

seq1: chr3_41059087_41059611
seq2: B6Ng01-037H11.g_199_720 (reverse)

seq1  ATAACAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTAC  50
      |||| ||||||||||||||||||||| |||||||||||||||| ||||||
seq2  ATAAAAGAACCTCTGGTGGAATCACC-TGCCTGACCTAAAGCTGTACTAC  49

seq1  AGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGC  100
      |||||||||| ||||||||||||||||||| |||| ||||||||||| | 
seq2  AGAGCAATTGAGATAAAAACTGCATGGTAC-GGTACAGTGACAGACAGGT  98

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  150
      ||| |||||||||||||| |||||| |||||| ||| |||||||||||||
seq2  AGATCAATGGAATAGAATCGAAGACCCAGAAATGAACCCACACACCTATG  148

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  200
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  GTCACTTGATCTTTGACAAGGGAGCAAAAACCATCCAGTGGAAAAAAGAC  198

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  250
      || |||||||||||||| |||||||||||||||   ||||  | ||||||
seq2  AGAATTTTCAACAAATGTTGCTGGCACAACTGGCACTTAT--TATAGAAG  246

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  300
      |||||||||||||||| || ||| ||||||||| ||| || | |||||||
seq2  AATGCGAATTGATCCATTCTTATATCCTTGTACAAAGCTCTAGTCTAAGT  296

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  350
      ||||||| ||| |||||||||||||||||| | |||||||||||||||||
seq2  GGATCAATGAATGCCACATAAAACCAGAGAGAGTGAAACTTATAGAGGAG  346

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  400
      ||||||| |||||||||||||||||||| ||||||| ||||||||||  |
seq2  AAAGTGGAGAAAAGCCTTGAAGATATGGGCACAGGGTAAAAATTCCTAAA  396

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  450
       ||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  CAGAACAGCAATAGCTTGTGCTGTAAGATTGAGAATTGACAAATGGGACC  446

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  500
      |||| ||| ||||||| ||||| |||||||| ||||| ||||||||||||
seq2  TCATAAAATTGCAAAGTTTCTGTAAGGCAAAGGACACTGTCAATAAGACA  496

seq1  AAAAGG-CACCAACAGATTGGGAAAG  525
      |||||| |||||||||||||||| ||
seq2  AAAAGGCCACCAACAGATTGGGAGAG  522