BAC Information

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BAC

Clone NameB6Ng01-037H24
Chromosome15 (Build37)
Map Location 43,219,817 - 43,377,151
singlet/doubletdoublet
Overlap geneTtc35
Upstream geneLOC100039197, Angpt1, Rspo2, LOC675960, Eif3s6
Downstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037H24.bB6Ng01-037H24.g
ACCDH865345DH865346
length1,135701
definitionDH865345|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H24, 5' end.DH865346|Mus musculus domesticus DNA, BAC clone: B6Ng01-037H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,375,994 - 43,377,151)(43,219,817 - 43,220,505)
sequence
gaattctctccctcataatttttcttactagtctttcagattttataata
tgatatgctctgaaccttttagtaaaacgaaggtttctcatttcagccta
actgctgctaatctattccaaatgttaacaatgcaagtaaggtctggtaa
ccatccctgcactgagctgataataggagtagagctgatcaccatctggt
ttggttcagagtagaacttgcagcctaatagtgcagaatttgagttggaa
gtcccttgcatttcatgaatgccacaaacagaatttaaacaaatggcact
ccccaatagacatgagtccatattcattgctctgtaggtttgctaaatat
ggaatatcatattactaattttagcaaattctaggctatataaacaggcc
caaacctcttaacataaattatgccagagctatttaatgataatttacat
ggtgatgccttttaggagttatgacagaaacccattttagaaataaaaag
caaaatttaaaattgtgtttttcttgcatgcttctcttcccaatgctgct
gttgtagatctataaaaaatatgttctactgcaccacatcatgcataaat
tagaaaatctgatttacctacaactactagtgatttttaaatgggttgtt
ggtccagactagaagtgtatcaccagtccttttcaattacaaataatttc
agcagcaatctagatttatacaaaggaatctttcttctaattatattaaa
ttataaccagattcaaacttgtctaagagtttgggagctcagaccatgga
tatttaataatcagatccatgttcatcatagtctcattgtatgccaatac
tttgaattatgcctggcacacagtaagcatctcctaaatgaatgaagccc
gagagacctatatggaaattacagtgtttggacacatgtctactttcttg
aaattctgctctagcagggacattttcaaagttatcagagaattataagt
ttttatagcctgatggcctaggcctttcagtataacatctacactggcaa
tagccctattctgcgatatactcatatttatgtattactcaactctcaaa
caaaagctcaagataagagagataggtccctcctt
gaattctcatgtgatgaatttttgttttattttattttttttccattttt
tattaggtatttagctcatttacatttccaatgctataccaaaagtcccc
catacccacccacccccactcccctacccacccactccccctttttggcc
ctggcattcccctgtactttttaaagagaaggatggagaaagaggtaagg
atggaagggagagagagatgcccatttagtgtgcacacagctggcttatt
ttggaaatgtcaatctcttgtttattttcctatttcctatttcaattact
agaaaagctgtacatatctattcttaattaaaaaaaaataacttataatt
ttaaaaaatgtggcaatgcacatcttggaaatgtggtgcgagagaaatgt
catttgcaacactgtcctcacttgattcccctctgaagtttcagtgacta
aaatgatgatctactgccagtctcgactaaggcctgggctttgtacagaa
gattttatttagctttagctcagcgtaaagccataattatccccgagaaa
acattttgtcactataaaatgctagtttttcaggtgctgaaacacttttc
cacaactagggctttcaagtagaaaaagagggtctcatttcaagtccagt
acaggcagagattctcaaatatcgtttaaaagtccatcattttgggtgca
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_43375994_43377151
seq2: B6Ng01-037H24.b_42_1176 (reverse)

seq1  AAGGAGG--ACTATCTCTCCTA-CTTGAGCTTTTGTTTGGAGA-TGGAGT  46
      |||||||   ||||||||| || ||||||||||||||| |||| | ||||
seq2  AAGGAGGGACCTATCTCTCTTATCTTGAGCTTTTGTTT-GAGAGTTGAGT  49

seq1  ACATACATAAATAATTGAGTAATTAATCTGCAGGAAATAGGGCTAATTTG  96
      | |||||||||||  ||||||    ||| ||||  ||||||||||  |||
seq2  A-ATACATAAATA--TGAGTA---TATC-GCAG--AATAGGGCTA--TTG  88

seq1  CCAGTGTAGATGTTATACTTGTAAAGGCCTAGGCCATCCAGGCTTATAAA  146
      |||||||||||||||||||   ||||||||||||||| ||||| ||||||
seq2  CCAGTGTAGATGTTATACT--GAAAGGCCTAGGCCAT-CAGGC-TATAAA  134

seq1  AACTTTATATTCTCTGATTAACTTTGAAAATGTCCCTGGCTAAGGAGCAG  196
      |||||   ||||||||| ||||||||||||||||||| ||||  ||||||
seq2  AACTTATAATTCTCTGA-TAACTTTGAAAATGTCCCT-GCTA--GAGCAG  180

seq1  AAATTTCAAGAAAGTAGAACAATGTTGTCCAAACACTTGTTAATTTCCAT  246
       |||||||||||||||||   ||| ||||||||||||   ||||||||||
seq2  -AATTTCAAGAAAGTAGA--CATG-TGTCCAAACACT--GTAATTTCCAT  224

seq1  ATAGGTCTCTCGGGCTTCATTCATTTAGGAGATGCTTACTGTGTGCCAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCTCTCGGGCTTCATTCATTTAGGAGATGCTTACTGTGTGCCAGG  274

seq1  CATAATTCAAAGTATTGGCAATACAATGAGACTATGATGAACATGGATCT  346
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CATAATTCAAAGTATTGGC-ATACAATGAGACTATGATGAACATGGATCT  323

seq1  GATTATTAAATATCCATGGTCTGAGCTCCCAAACTCTTAGACAAGTTTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTAAATATCCATGGTCTGAGCTCCCAAACTCTTAGACAAGTTTGA  373

seq1  ATCTGGTTATAATTTAATATAATTAGAAGAAAGATTCCTTTGTATAAATC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTTATAATTTAATATAATTAGAAGAAAGATTCCTTTGTATAAATC  423

seq1  TAGATTGCTGCTGAAATTATTTGTAATTGAAAAGGACTGGTGATACACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGCTGCTGAAATTATTTGTAATTGAAAAGGACTGGTGATACACTT  473

seq1  CTAGTCTGGACCAACAACCCATTTAAAAATCACTAGTAGTTGTAGGTAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGGACCAACAACCCATTTAAAAATCACTAGTAGTTGTAGGTAAA  523

seq1  TCAGATTTTCTAATTTATGCATGATGTGGTGCAGTAGAACATATTTTTTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTTCTAATTTATGCATGATGTGGTGCAGTAGAACATATTTTTTA  573

seq1  TAGATCTACAACAGCAGCATTGGGAAGAGAAGCATGCAAGAAAAACACAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTACAACAGCAGCATTGGGAAGAGAAGCATGCAAGAAAAACACAA  623

seq1  TTTTAAATTTTGCTTTTTATTTCTAAAATGGGTTTCTGTCATAACTCCTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTTTGCTTTTTATTTCTAAAATGGGTTTCTGTCATAACTCCTA  673

seq1  AAAGGCATCACCATGTAAATTATCATTAAATAGCTCTGGCATAATTTATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCATCACCATGTAAATTATCATTAAATAGCTCTGGCATAATTTATG  723

seq1  TTAAGAGGTTTGGGCCTGTTTATATAGCCTAGAATTTGCTAAAATTAGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGGTTTGGGCCTGTTTATATAGCCTAGAATTTGCTAAAATTAGTA  773

seq1  ATATGATATTCCATATTTAGCAAACCTACAGAGCAATGAATATGGACTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATATTCCATATTTAGCAAACCTACAGAGCAATGAATATGGACTCA  823

seq1  TGTCTATTGGGGAGTGCCATTTGTTTAAATTCTGTTTGTGGCATTCATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATTGGGGAGTGCCATTTGTTTAAATTCTGTTTGTGGCATTCATGA  873

seq1  AATGCAAGGGACTTCCAACTCAAATTCTGCACTATTAGGCTGCAAGTTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAGGGACTTCCAACTCAAATTCTGCACTATTAGGCTGCAAGTTCT  923

seq1  ACTCTGAACCAAACCAGATGGTGATCAGCTCTACTCCTATTATCAGCTCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAACCAAACCAGATGGTGATCAGCTCTACTCCTATTATCAGCTCA  973

seq1  GTGCAGGGATGGTTACCAGACCTTACTTGCATTGTTAACATTTGGAATAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGGATGGTTACCAGACCTTACTTGCATTGTTAACATTTGGAATAG  1023

seq1  ATTAGCAGCAGTTAGGCTGAAATGAGAAACCTTCGTTTTACTAAAAGGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGCAGTTAGGCTGAAATGAGAAACCTTCGTTTTACTAAAAGGTT  1073

seq1  CAGAGCATATCATATTATAAAATCTGAAAGACTAGTAAGAAAAATTATGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATATCATATTATAAAATCTGAAAGACTAGTAAGAAAAATTATGA  1123

seq1  GGGAGAGAATTC  1158
      ||||||||||||
seq2  GGGAGAGAATTC  1135

seq1: chr15_43219817_43220505
seq2: B6Ng01-037H24.g_66_766

seq1  GAATTCTCATGTGATGAATTTTTGTTTTATTTTATTTTTTTTCCATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATGTGATGAATTTTTGTTTTATTTTATTTTTTTTCCATTTTT  50

seq1  TATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGTATTTAGCTCATTTACATTTCCAATGCTATACCAAAAGTCCCC  100

seq1  CATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCACCCACCCCCACTCCCCTACCCACCCACTCCCCCTTTTTGGCC  150

seq1  CTGGCATTCCCCTGTACTTTTTAAAGAGAAGGATGGAGAAAGAGGTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATTCCCCTGTACTTTTTAAAGAGAAGGATGGAGAAAGAGGTAAGG  200

seq1  ATGGAAGGGAGAGAGAGATGCCCATTTAGTGTGCACACAGCTGGCTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGGAGAGAGAGATGCCCATTTAGTGTGCACACAGCTGGCTTATT  250

seq1  TTGGAAATGTCAATCTCTTGTTTATTTTCCTATTTCCTATTTCAATTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATGTCAATCTCTTGTTTATTTTCCTATTTCCTATTTCAATTACT  300

seq1  AGAAAAGCTGTACATATCTATTCTTAATTAAAAAAAAATAACTTATAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCTGTACATATCTATTCTTAATTAAAAAAAAATAACTTATAATT  350

seq1  TTAAAAAATGTGGCAATGCACATCTTGGAAATGTGGTGCGAGAGAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAATGTGGCAATGCACATCTTGGAAATGTGGTGCGAGAGAAATGT  400

seq1  CATTTGCAACACTGTCCTCACTTGATTCCCCTCTGAAGTTTCAGTGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCAACACTGTCCTCACTTGATTCCCCTCTGAAGTTTCAGTGACTA  450

seq1  AAATGATGATCTACTGCCAGTCTCGACTAAGGCCTGGGCTTTGTACAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGATCTACTGCCAGTCTCGACTAAGGCCTGGGCTTTGTACAGAA  500

seq1  GATTT--ATTAGCTTTAGCTCAGCGTAAAGCCATAATTATCCCCGAGAAA  548
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTTAGCTTTAGCTCAGCGTAAAGCCATAATTATCCCCGAGAAA  550

seq1  ACA-TTTGTCACTAT-AAATGCTAG-TTTTCAGGTGCTGAAACAC-TTTC  594
      ||| ||||||||||| ||||||||| ||||||||||||||||||| ||||
seq2  ACATTTTGTCACTATAAAATGCTAGTTTTTCAGGTGCTGAAACACTTTTC  600

seq1  CACAACTAGG--CTTCAAGTAG-AAAAGAGGGTCTCATTTCAAGTCCAGT  641
      ||||||||||   ||||||||| |||||||||||||||||||||||||||
seq2  CACAACTAGGGCTTTCAAGTAGAAAAAGAGGGTCTCATTTCAAGTCCAGT  650

seq1  ACA-GCAGAGATTCTCAAATATCGTTT-AAAGTCCATCATTTT-GGTGCA  688
      ||| ||||||||||||||||||||||| ||||||||||||||| ||||||
seq2  ACAGGCAGAGATTCTCAAATATCGTTTAAAAGTCCATCATTTTGGGTGCA  700

seq1  C  689
      |
seq2  C  701