BAC Information

Click to search

BAC

Clone NameB6Ng01-038A16
Chromosome15 (Build37)
Map Location 48,327,785 - 48,328,999
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC100039493
Downstream geneEG665146, LOC100039600
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038A16.bB6Ng01-038A16.g
ACCDH865730DH865731
length1,2711,194
definitionDH865730|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A16, 5' end.DH865731|Mus musculus domesticus DNA, BAC clone: B6Ng01-038A16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctaccagactttcaaagaagagttaatactaatactcttcaaact
attccacaaaatataaacagaacaaacaatacctaattcaatctatcatt
cacatttactctgataactaaaacacacaaatatgctgcattgagagaca
aattcagacaaattttgcttattaatatcaatataaaagtactccataaa
attcttgaaagctgagtgcaagaacgtgtcaaaaacaccattcactatga
tcaagtaggcttcatcccatggattcagggacagctaaatatatacaaat
ccatcaatgtaacccactatataaacaaattcaaagaaacaaatcacatg
atcatctcattagaccctaaaaaagccttttacaaaatgcaacacccttt
atgttaaaagttttcaagagatcggggatttatggcacatatataaacat
aataaaagcaatatacagtaagccaacagccaacatcaaattaaatggag
ataatcttaaaggaatcacagtaaaatcagggataagacaaagctgccca
ctctccccgtatctgttctatatattgctcgaagttcttgctagaacaat
aagaaaacaagtgatatcaaggggataaggattgaaagaaagaagtcaag
gtatcactattcacagatgacaggatagtataaatatgggatctccataa
ttatacaagagaattccaacaactgatgaacaacttcagaaaagtgcctg
gatataaaattaactcaaacaaatgcatagccttacttttacaagggata
aatgagctgagctgtgaaagaaaaaaaaaaaaaagaacagctcccttatc
agtagtcagaaataatacaaaatgccttggtgtaactctaaccaagcaag
tgaaacaccagtatgacaagaacttcaagtcactgaagaatgaaattgag
agaccttttaagatggaaagatctcccacagtcgtggatcagtagaattc
acatagtgaaatggcgatctactaaacaatctagagattcatgcaattcc
caacaaattccacacattttcagacatgggaagaggcattctccacctct
atccaaaaaaaaaggatggcctaacaattatgacatagtagactggaagg
aatacctaactcagcgttcttcaggcactggaaaaaaaattgttcctgcg
agttacggtcacactgtgaattagattcattacttggacttatcccttgg
tcaaatcaaaccactcgttat
gaattcatctggggagatcagacaggcccaaaaagactactccttggtta
attaaaacttagctgatgatcatatctgcaaaatcttgttggatagcaat
catatcagagtggtaatctgtcatgtatatagactgtgtactaccttatg
cagttcagaaaggaacgtgcctaaaagtattcagaaaagacagtagcctc
tatcttgcttgtttatcatggtgaaatcactaaatacctgctaaatgaat
gaatgaatgaatggaaacattcatgaatgtacctcatcatagagagctaa
ttttgtcatttctcatatacaatatgggctattaaatcttttgacattat
tattttcagagtagctactgaaaactaacctaatttctataaaggtagtg
atattctactagttagttctgacctaatctgaacttcatggctttgctct
atataactgacatgcatttgctattggaactccattcagcttgcagatgg
cttcccagctgttaccctttggagacacaatctttgagggaaaacatatg
ttattgctcaagttatttccaaagttagtccccctcccccttgtaagtgg
tgaatttagactttaggaaaatatactcccagataaacatgattctggga
ttataccagatatatgcatgagagttgaatctctttgatagggagtaatc
aggtttgtatgaaatatttaagccattactcaaaaatatatggaaatgtg
aggaatttcatacatttaaggaaaccaacctaatgtgttctgtgtttcaa
aatacagactttgaatttacttaacactattttgagtcatgatttgaata
tttctataagcaatgtgatcttagaagatttacaagagattaaattttgt
gttaattttttagaattctgcataattttcataatttcaccattcaatca
aactttgatatctgtttatacctataagatttccatgttgattcataaac
tatactgtttaggatttgcaccatgattatcagacatgatttactaaagc
aaataaacaaatgtagtcacttattggactttccgaattgtttaaaacta
tgaatactttatttaaataatatgggaactataagagctcgtactctatt
taatctgtttccaaaatgttggaattcgtattgtacagatacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_48327785_48328999
seq2: B6Ng01-038A16.g_67_1260 (reverse)

seq1  TTGTATCTGTAACAATACCACAAATACCAACATATTTTTGTAAAACAGAA  50
      |||||||||| |||||   || ||| ||||||   |||||  ||||||| 
seq2  TTGTATCTGT-ACAAT---ACGAATTCCAACA---TTTTG-GAAACAGA-  41

seq1  TTAAAATAGAGTACAGAGCTCTTATAGTATCCATAATTATTTAAATTAAA  100
       | ||||||||||| |||||||||||||  |||| |||||||||| ||||
seq2  -TTAAATAGAGTAC-GAGCTCTTATAGTTCCCAT-ATTATTTAAA-TAAA  87

seq1  GTATTTCATAGTTTTTAAACAATTTCTGAAAGTCCAATAAGTGACTACAT  150
      ||| ||||||| |||||||||| ||| |||||||||||||||||||||||
seq2  GTA-TTCATAG-TTTTAAACAA-TTCGGAAAGTCCAATAAGTGACTACAT  134

seq1  TTGTTTATATGCTTTAAGTAAATCATGTCTGATAATCATGGTGCAAAATC  200
      |||||||| |||||| |||||||||||||||||||||||||||| |||||
seq2  TTGTTTATTTGCTTT-AGTAAATCATGTCTGATAATCATGGTGC-AAATC  182

seq1  CTAAACAGTATAGTTTATGAATCAACATGGAAATCTTATAGGTATGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTAAACAGTATAGTTTATGAATCAACATGGAAATCTTATAGGTAT-AAAC  231

seq1  AGAATATCAAAGTTTGATTGAATGGTGAAATTATGAAAATTATGCAGAAT  300
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-ATATCAAAGTTTGATTGAATGGTGAAATTATGAAAATTATGCAGAAT  280

seq1  TCTAAAAAAATTAACACAAAATTTAATCTCTTGTAAATCTTCTAAGATCA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCT-AAAAAATTAACACAAAATTTAATCTCTTGTAAATCTTCTAAGATCA  329

seq1  CATTGCTTATAGAAATATTCAAATCATGACTCAAAATAGTGTTAAGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTATAGAAATATTCAAATCATGACTCAAAATAGTGTTAAGTAAA  379

seq1  TTCAAAGTCTGTATTTTGAAACACAGAACACATTAGGTTGGTTTCCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTCTGTATTTTGAAACACAGAACACATTAGGTTGGTTTCCTTAA  429

seq1  ATGTATGAAATTCCTCACATTTCCATATATTTTTGAGTAATGGCTTAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAAATTCCTCACATTTCCATATATTTTTGAGTAATGGCTTAAAT  479

seq1  ATTTCATACAAACCTGATTACTCCCTATCAAAGAGATTCAACTCTCATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATACAAACCTGATTACTCCCTATCAAAGAGATTCAACTCTCATGC  529

seq1  ATATATCTGGTATAATCCCAGAATCATGTTTATCTGGGAGTATATTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTGGTATAATCCCAGAATCATGTTTATCTGGGAGTATATTTTCC  579

seq1  TAAAGTCTAAATTCACCACTTACAAGGGGGAGGGGGACTAACTTTGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTAAATTCACCACTTACAAGGGGGAGGGGGACTAACTTTGGAAA  629

seq1  TAACTTGAGCAATAACATATGTTTTCCCTCAAAGATTGTGTCTCCAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGAGCAATAACATATGTTTTCCCTCAAAGATTGTGTCTCCAAAGG  679

seq1  GTAACAGCTGGGAAGCCATCTGCAAGCTGAATGGAGTTCCAATAGCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGCTGGGAAGCCATCTGCAAGCTGAATGGAGTTCCAATAGCAAAT  729

seq1  GCATGTCAGTTATATAGAGCAAAGCCATGAAGTTCAGATTAGGTCAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTCAGTTATATAGAGCAAAGCCATGAAGTTCAGATTAGGTCAGAAC  779

seq1  TAACTAGTAGAATATCACTACCTTTATAGAAATTAGGTTAGTTTTCAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTAGAATATCACTACCTTTATAGAAATTAGGTTAGTTTTCAGTA  829

seq1  GCTACTCTGAAAATAATAATGTCAAAAGATTTAATAGCCCATATTGTATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCTGAAAATAATAATGTCAAAAGATTTAATAGCCCATATTGTATA  879

seq1  TGAGAAATGACAAAATTAGCTCTCTATGATGAGGTACATTCATGAATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGACAAAATTAGCTCTCTATGATGAGGTACATTCATGAATGTT  929

seq1  TCCATTCATTCATTCATTCATTTAGCAGGTATTTAGTGATTTCACCATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCATTCATTCATTCATTTAGCAGGTATTTAGTGATTTCACCATGA  979

seq1  TAAACAAGCAAGATAGAGGCTACTGTCTTTTCTGAATACTTTTAGGCACG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAAGCAAGATAGAGGCTACTGTCTTTTCTGAATACTTTTAGGCACG  1029

seq1  TTCCTTTCTGAACTGCATAAGGTAGTACACAGTCTATATACATGACAGAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTGAACTGCATAAGGTAGTACACAGTCTATATACATGACAGAT  1079

seq1  TACCACTCTGATATGATTGCTATCCAACAAGATTTTGCAGATATGATCAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACTCTGATATGATTGCTATCCAACAAGATTTTGCAGATATGATCAT  1129

seq1  CAGCTAAGTTTTAATTAACCAAGGAGTAGTCTTTTTGGGCCTGTCTGATC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGTTTTAATTAACCAAGGAGTAGTCTTTTTGGGCCTGTCTGATC  1179

seq1  TCCCCAGATGAATTC  1215
      |||||||||||||||
seq2  TCCCCAGATGAATTC  1194