BAC Information

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BAC

Clone NameB6Ng01-038F04
Chromosome15 (Build37)
Map Location 51,030,247 - 51,147,901
singlet/doubletdoublet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038F04.bB6Ng01-038F04.g
ACCDH865915DH865916
length1,072888
definitionDH865915|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F04, 5' end.DH865916|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,146,830 - 51,147,901)(51,030,247 - 51,031,137)
sequence
gaattctgccattgattgtttaagaataaaagtaggtcattttctatctg
ctcatgacaacttctagacatcttgtcattcttgccacttgaatgtccag
ttgtggggagcctttctgaagcgttctataaactcataaatctgtcactg
gccctaaacttttaaagtcaagtcacggcaattcaccagcattctttcct
caaaagacccgcatactgtttggtttttcactgtcccaaaggacaaaatc
agattctctaccagttcaagatctgctagcctctactccttctttccagt
aaggcccaccaattttcctatgacagtgacacacacttctttgaggcaaa
gcagttcctggtcaaagagggactgaataggtccctttagtcactttacc
cttgtcttctcaactacttttcttctaggtgagtggcaactcttgggtag
aaagcttggcaatattccagagaaatcttttactcttcacacataaaatt
cctaatatagtgcgctttgctatgatgttttgatttcagatacagttaat
aaagcagagtagacagaagaggagaaaaatctgtgcaaaagtttatgttg
aacataagaatctcagacctgctgcactgggtttgaatcactcatctgac
ccactaggttgtagtcatgccgtactgtaatactctgtagctgttaatga
gccagagtcattatttcagactacacattcccactctttaacagttttgt
ttactctgattggcgttaattaaaaaaaaaataatttattccaaattcat
gactttgctggaaaccccatcctttttcttatcttctcaaaattacacaa
gcatatggggcattgtttccgttttgaagaatatattttacttcattctg
attacttttccttgtttatttcttcctgtctttggaaaatgtataaagca
taaagatgacactagtcccctccaggaccccaggagacccttgtgtctat
acaagttccatgaaagaacacccagtgtaggggaatgctaggacagggaa
gcaggaggggggaagggtgaat
gaattccatgtcattgcccccaagaaaaagaggacacttaagatgcagaa
caggatgacttcactgacattcaaagcttgttattattagcccagatttt
aaaaacaaattcagcatctttagaatttgtcatatcgaagttgcaataca
ctttgttctgcagggcaatacaagcgtttatcgagtttgagttgtttgtg
tctataacatgcagtgaaaatctgaactctgctctcttttcagagcatgg
ctaccaagtgtcccctgcataagtccacatgtttggaaaggaacagtgat
atatttgagctcagagctcctggacagggttttaacaacaggaaggcttg
tgtggcaaaaaaggctgctgcgaaggatgctttctgatgattctctgcct
gtgccaagatggggaagctaaatcacagcccttgtgggcgtattgtacca
ggcactaccgtgatcatcaccccatctacctcctgtttaacatgtgttat
gtgctatgttgttgacagagccaactaacatatttatttcaatggagcta
tacagttattccattttttgaaaggaaaagaataacttaaccaaaaattg
attttcaaatgttgttacctgagaaatgttaatatcctttgtagtatact
aatctatcacttgacttattggtggagaggggggtgaactttctgttcac
tgaacagatttatcgagatgctttcttctggatatgacatggtccttttt
attcttgactcaaacagctgagttactctcacaagtcttgcatggaattg
cagttatcatgatccataaaggatgatggtggactcctgcagctccacct
ggagaggtaatatactcttccgtactggggggaagcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_51146830_51147901
seq2: B6Ng01-038F04.b_45_1116 (reverse)

seq1  ACTCACCC-TCCCCCCTCCTGCTTCCCTGTCCTAGCATTCCCCTACACTG  49
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCCTTCCCCCCTCCTGCTTCCCTGTCCTAGCATTCCCCTACACTG  50

seq1  GGTGTTCTTTCATGGAACTTGTATAGACACAAGGGTCTCCTGGGGTCCTG  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCTTTCATGGAACTTGTATAGACACAAGGGTCTCCTGGGGTCCTG  100

seq1  GAGGGGACTAGTGTCATCCTTATGCTTTATACATTTTCCAAAGACAGGAA  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGGGGACTAGTGTCATCTTTATGCTTTATACATTTTCCAAAGACAGGAA  150

seq1  GAAATAAAACAAGGAAAAGTAATCAGAATGAAGTAAAATATATTCTTCAA  199
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAT-AAACAAGGAAAAGTAATCAGAATGAAGTAAAATATATTCTTCAA  199

seq1  AACGGAAACAATGCCCCATATGCTTGTGTAATTTTGAGAAGATAAGAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGAAACAATGCCCCATATGCTTGTGTAATTTTGAGAAGATAAGAAAA  249

seq1  AGGATGGGGTTTCCAGCAAAGTCATGAATTTGGAATAAATTATTTTTTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGGTTTCCAGCAAAGTCATGAATTTGGAATAAATTATTTTTTTT  299

seq1  TTAATTAACGCCAATCAGAGTAAACAAAACTGTTAAAGAGTGGGAATGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAACGCCAATCAGAGTAAACAAAACTGTTAAAGAGTGGGAATGTG  349

seq1  TAGTCTGAAATAATGACTCTGGCTCATTAACAGCTACAGAGTATTACAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGAAATAATGACTCTGGCTCATTAACAGCTACAGAGTATTACAGT  399

seq1  ACGGCATGACTACAACCTAGTGGGTCAGATGAGTGATTCAAACCCAGTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCATGACTACAACCTAGTGGGTCAGATGAGTGATTCAAACCCAGTGC  449

seq1  AGCAGGTCTGAGATTCTTATGTTCAACATAAACTTTTGCACAGATTTTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTCTGAGATTCTTATGTTCAACATAAACTTTTGCACAGATTTTTC  499

seq1  TCCTCTTCTGTCTACTCTGCTTTATTAACTGTATCTGAAATCAAAACATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCTGTCTACTCTGCTTTATTAACTGTATCTGAAATCAAAACATC  549

seq1  ATAGCAAAGCGCACTATATTAGGAATTTTATGTGTGAAGAGTAAAAGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAGCGCACTATATTAGGAATTTTATGTGTGAAGAGTAAAAGATT  599

seq1  TCTCTGGAATATTGCCAAGCTTTCTACCCAAGAGTTGCCACTCACCTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGAATATTGCCAAGCTTTCTACCCAAGAGTTGCCACTCACCTAGA  649

seq1  AGAAAAGTAGTTGAGAAGACAAGGGTAAAGTGACTAAAGGGACCTATTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTAGTTGAGAAGACAAGGGTAAAGTGACTAAAGGGACCTATTCA  699

seq1  GTCCCTCTTTGACCAGGAACTGCTTTGCCTCAAAGAAGTGTGTGTCACTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCTTTGACCAGGAACTGCTTTGCCTCAAAGAAGTGTGTGTCACTG  749

seq1  TCATAGGAAAATTGGTGGGCCTTACTGGAAAGAAGGAGTAGAGGCTAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGAAAATTGGTGGGCCTTACTGGAAAGAAGGAGTAGAGGCTAGCA  799

seq1  GATCTTGAACTGGTAGAGAATCTGATTTTGTCCTTTGGGACAGTGAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGAACTGGTAGAGAATCTGATTTTGTCCTTTGGGACAGTGAAAAA  849

seq1  CCAAACAGTATGCGGGTCTTTTGAGGAAAGAATGCTGGTGAATTGCCGTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAGTATGCGGGTCTTTTGAGGAAAGAATGCTGGTGAATTGCCGTG  899

seq1  ACTTGACTTTAAAAGTTTAGGGCCAGTGACAGATTTATGAGTTTATAGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTTTAAAAGTTTAGGGCCAGTGACAGATTTATGAGTTTATAGAA  949

seq1  CGCTTCAGAAAGGCTCCCCACAACTGGACATTCAAGTGGCAAGAATGACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCAGAAAGGCTCCCCACAACTGGACATTCAAGTGGCAAGAATGACA  999

seq1  AGATGTCTAGAAGTTGTCATGAGCAGATAGAAAATGACCTACTTTTATTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCTAGAAGTTGTCATGAGCAGATAGAAAATGACCTACTTTTATTC  1049

seq1  TTAAACAATCAATGGCAGAATTC  1072
      |||||||||||||||||||||||
seq2  TTAAACAATCAATGGCAGAATTC  1072

seq1: chr15_51030247_51031137
seq2: B6Ng01-038F04.g_66_953

seq1  GAATTCCATGTCATTGCCCCCAAGAAAAAGAGGACACTTAAGATGCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCATTGCCCCCAAGAAAAAGAGGACACTTAAGATGCAGAA  50

seq1  CAGGATGACTTCACTGACATTCAAAGCTTGTTATTATTAGCCCAGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGACTTCACTGACATTCAAAGCTTGTTATTATTAGCCCAGATTTT  100

seq1  AAAAACAAATTCAGCATCTTTAGAATTTGTCATATCGAAGTTGCAATACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAATTCAGCATCTTTAGAATTTGTCATATCGAAGTTGCAATACA  150

seq1  CTTTGTTCTGCAGGGCAATACAAGCGTTTATCGAGTTTGAGTTGTTTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTGCAGGGCAATACAAGCGTTTATCGAGTTTGAGTTGTTTGTG  200

seq1  TCTATAACATGCAGTGAAAATCTGAACTCTGCTCTCTTTTCAGAGCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAACATGCAGTGAAAATCTGAACTCTGCTCTCTTTTCAGAGCATGG  250

seq1  CTACCAAGTGTCCCCTGCATAAGTCCACATGTTTGGAAAGGAACAGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGTGTCCCCTGCATAAGTCCACATGTTTGGAAAGGAACAGTGAT  300

seq1  ATATTTGAGCTCAGAGCTCCTGGACAGGGTTTTAACAACAGGAAGGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGAGCTCAGAGCTCCTGGACAGGGTTTTAACAACAGGAAGGCTTG  350

seq1  TGTGGCAAAAAAGGCTGCTGCGAAGGATGCTTTCTGATGATTCTCTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAAAAAAGGCTGCTGCGAAGGATGCTTTCTGATGATTCTCTGCCT  400

seq1  GTGCCAAGATGGGGAAGCTAAATCACAGCCCTTGTGGGCGTATTGTACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAAGATGGGGAAGCTAAATCACAGCCCTTGTGGGCGTATTGTACCA  450

seq1  GGCACTACCGTGATCATCACCCCATCTACCTCCTGTTTAACATGTGTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTACCGTGATCATCACCCCATCTACCTCCTGTTTAACATGTGTTAT  500

seq1  GTGCTATGTTGTTGACAGAGCCAACTAACATATTTATTTCAATGGAGCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTATGTTGTTGACAGAGCCAACTAACATATTTATTTCAATGGAGCTA  550

seq1  TACAGTTATTCCATTTTTTGAAAGGAAAAGAATAACTTAACCAAAAATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTATTCCATTTTTTGAAAGGAAAAGAATAACTTAACCAAAAATTG  600

seq1  A-TTTCAAATGTTGTTACCTGAGAAATGTTAATATCCTTTGTAGTATACT  649
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAATGTTGTTACCTGAGAAATGTTAATATCCTTTGTAGTATACT  650

seq1  AATCTATCACTTGACTTATTGGTGGAGA-GGGGGTGAACTTTCTGTTCAC  698
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATCTATCACTTGACTTATTGGTGGAGAGGGGGGTGAACTTTCTGTTCAC  700

seq1  TGAACAGACTTTATCGAGATGCTTTCTTCTGGATATGACATGGT-CTTTT  747
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  TGAACAGA-TTTATCGAGATGCTTTCTTCTGGATATGACATGGTCCTTTT  749

seq1  TATTCTTGAACTCAAAACAGCTGAGGTTACTCTCACAAGTCTTGCATGGA  797
      |||||||| |||| |||||||||| |||||||||||||||||||||||||
seq2  TATTCTTG-ACTC-AAACAGCTGA-GTTACTCTCACAAGTCTTGCATGGA  796

seq1  ATTGCAGTTATCAGTGATCCATAAAGGATTATGGTGGAGCTCCTGCAGCT  847
      ||||||||||||| ||||||||||||||| |||||||| |||||||||||
seq2  ATTGCAGTTATCA-TGATCCATAAAGGATGATGGTGGA-CTCCTGCAGCT  844

seq1  ACACCTGGAGAGGTAATAATCTCTTCGGTACTGTGGGGAAGCAT  891
       |||||||||||||||||  |||||| |||||| ||||||||||
seq2  CCACCTGGAGAGGTAATATACTCTTCCGTACTGGGGGGAAGCAT  888