BAC Information

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BAC

Clone NameB6Ng01-038G19
Chromosome15 (Build37)
Map Location 36,560,353 - 36,753,523
singlet/doubletdoublet
Overlap geneYwhaz
Upstream geneVps13b, Cox6c, Rgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1, Rnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746
Downstream geneZfp706, LOC670911, LOC667492, LOC100041288, Grhl2, Ncald, LOC667498, 4930447A16Rik, LOC100041313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038G19.bB6Ng01-038G19.g
ACCDH865987DH865988
length1,1561,027
definitionDH865987|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G19, 5' end.DH865988|Mus musculus domesticus DNA, BAC clone: B6Ng01-038G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,752,351 - 36,753,523)(36,560,353 - 36,561,391)
sequence
gaattcttttcatttgaggacatttgctgtgatgtgttgggcttttgtaa
tccttgtctccttctgggatctcttggcactcggaagctcacctgtgtgg
agggagagcacatacctgggtggtagaggaagaagtgttgaaaacatctc
tgggctagtaattgtaaccatctctccttcagacaattgctggcaactct
caatgtcttttctcttcactctcctcacacacattggtgacccttatctg
caatctctaataccttctactctctatgaaacaggctggccaaaacctca
ctggttgttggtagattatgaaccatgaatcccaagggctgaagatatag
ctcagcgtagaacacttacctctaatacatggggccctatgctcagtccc
agtatcacaaacaaaacagggaccacctacccagtcatccacagcatctt
tgaaagatgaggcttcagagaccactgctggagaaggcgcctttccctaa
atacttgctctaattgtaggaaagacttcctcagaatgtcaacacacagc
aaggaggggttgggggatactttgctgaacttagtaattaacatgttact
ttgtgtgccagatgtagcagcgaacacctttaaccccagcactggggagg
cagaggctggaggatctctgtgaatttgagaccagcctggtctacagagt
tccaggacagccaggactacccagagaaaccctgtttcaaacaaacaaac
aaaccacaataaattaaataaacacttctcaccagggctcactttggcct
attagccataagcatctcaaaaagacagagtgttctgatggctaaccact
tcccatcctctgaagcagcaaaaaatatgggagagttttgtttccataac
ttcaagtatttggtttctcaaggccaatgactagaaaataaagtcagcaa
gcaacagaagtcttgggtcaggtcacatgcagagactaaagatgggtata
agcatatctgcattatgttattataatctatattaatagtactattctat
aatccacataacagggtttttatttaattttgctggaggtcaagatgaaa
tgcttgcaattatttattaacattatttctatttattatttaatctacca
caaaat
gaattccactgagtttgaagctagcctggtctctatagtttccatctacc
ctaggctacagaataagactgttccaggatcagagattctcatttcttct
tcttgtgatccttcttcttgtgataggcgttttctagcactgagctacac
atccagcccccaaattgtttcttaaactaggaaatgcacacttggggtca
caccagagcccaaaggttggccttggctaacaggcttttgcggtaactcc
agcagaggattagtgagaggcactgagaaaagggggaggaaatgttgtcc
ggctgcccagggacatgcaaagggaatctcagaggagagccttggcaggc
agcagccgggctttactccaagaagggtacacacaaagtcatgagtccat
cagaaagaaagttcctttcctgacagggaaacaggagatccaagtcttaa
gtctgagcccatgggctgtgtcatgcggctcacatcctctgttcaggttt
ccatatatatcattagtcatctgtttgcaggggaagagtcctctggggtc
ccttactcctgggtgacagtctcagtcatgttctagttttcgttgaattt
aatctgcccatctaccaacatcctattttttttcctagaatttactcaac
ctgagtctgtccataagaaactgatctgtttgctatgctaatgaaatcag
ggttctgcacttgccaggttgagtactaggccctggactgatcatcccca
ccaagaaacatcttagaaagggattgctcatctctccagtgatttcctgt
gacacataatcacagggctggctggccagtagctacaactcatcctgggg
gttcaggagactcatggagatgataacatccgattctatcgtaaaagatg
agtaagagtaggcagagccttcccagcacagtcaggcagaaagccaaatg
tagagtttaggatgagaagggacagttggaagatgaggccctgtagtctc
agacaagaaagccctttacgtctctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_36752351_36753523
seq2: B6Ng01-038G19.b_45_1200 (reverse)

seq1  ATTTTGTGTTGGTAGATTTTTAAAATAATAAATAGAAATAATGTTAATAA  50
      ||||||   |||||||||    ||||||||||||||||||||||||||||
seq2  ATTTTG---TGGTAGATT----AAATAATAAATAGAAATAATGTTAATAA  43

seq1  TATATTTACAAAGCATTTCATCTGTGA-CTTCAGCAAAAATAAAATAAAA  99
       ||| || | ||||||||||||| ||| || |||| ||||| ||||||||
seq2  -ATAATTGC-AAGCATTTCATCT-TGACCTCCAGC-AAAATTAAATAAAA  89

seq1  ACACTGTAATGT-GATTATAAGATAAGTACTAATTAATATAAGATTAATA  148
      || |||| |||| |||||| |||  |||||| |||||||| ||||| |||
seq2  ACCCTGTTATGTGGATTAT-AGAATAGTACT-ATTAATAT-AGATT-ATA  135

seq1  ATAACATTAATGCAGATATGC-TATACCCATCTCTAGGTCTCTTGCATGT  197
      |||||| |||||||||||||| ||||||||||| || ||||| |||||||
seq2  ATAACA-TAATGCAGATATGCTTATACCCATCTTTA-GTCTC-TGCATGT  182

seq1  GACCCTGACCCAAGACTTCTGTTGCTTGCTGACTTTATTTTCTAGTCATT  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GA-CCTGACCCAAGACTTCTGTTGCTTGCTGACTTTATTTTCTAGTCATT  231

seq1  GGCCTTGAGAAACCAAATACTTGAAGTTATGGAAACAAAACTCTCCCATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGAGAAACCAAATACTTGAAGTTATGGAAACAAAACTCTCCCATA  281

seq1  TTTTTTTGCTGCTTCAGAGGATGGGAAGTGGTTAGCCATCAGAACACTCT  347
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTTTGCTGCTTCAGAGGATGGGAAGTGGTTAGCCATCAGAACACTCT  330

seq1  GTCTTTTTGAGATGCTTATGGCTAATAGGCCAAAGTGAGCCCTGGTGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTTGAGATGCTTATGGCTAATAGGCCAAAGTGAGCCCTGGTGAGA  380

seq1  AGTGTTTATTTAATTTATTGTGGTTTGTTTGTTTGTTTGAAACAGGGTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTATTTAATTTATTGTGGTTTGTTTGTTTGTTTGAAACAGGGTTT  430

seq1  CTCTGGGTAGTCCTGGCTGTCCTGGAACTCTGTAGACCAGGCTGGTCTCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGTAGTCCTGGCTGTCCTGGAACTCTGTAGACCAGGCTGGTCTCA  480

seq1  AATTCACAGAGATCCTCCAGCCTCTGCCTCCCCAGTGCTGGGGTTAAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACAGAGATCCTCCAGCCTCTGCCTCCCCAGTGCTGGGGTTAAAGG  530

seq1  TGTTCGCTGCTACATCTGGCACACAAAGTAACATGTTAATTACTAAGTTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGCTGCTACATCTGGCACACAAAGTAACATGTTAATTACTAAGTTC  580

seq1  AGCAAAGTATCCCCCAACCCCTCCTTGCTGTGTGTTGACATTCTGAGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGTATCCCCCAACCCCTCCTTGCTGTGTGTTGACATTCTGAGGAA  630

seq1  GTCTTTCCTACAATTAGAGCAAGTATTTAGGGAAAGGCGCCTTCTCCAGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCCTACAATTAGAGCAAGTATTTAGGGAAAGGCGCCTTCTCCAGC  680

seq1  AGTGGTCTCTGAAGCCTCATCTTTCAAAGATGCTGTGGATGACTGGGTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCTCTGAAGCCTCATCTTTCAAAGATGCTGTGGATGACTGGGTAG  730

seq1  GTGGTCCCTGTTTTGTTTGTGATACTGGGACTGAGCATAGGGCCCCATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCCCTGTTTTGTTTGTGATACTGGGACTGAGCATAGGGCCCCATGT  780

seq1  ATTAGAGGTAAGTGTTCTACGCTGAGCTATATCTTCAGCCCTTGGGATTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGGTAAGTGTTCTACGCTGAGCTATATCTTCAGCCCTTGGGATTC  830

seq1  ATGGTTCATAATCTACCAACAACCAGTGAGGTTTTGGCCAGCCTGTTTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCATAATCTACCAACAACCAGTGAGGTTTTGGCCAGCCTGTTTCA  880

seq1  TAGAGAGTAGAAGGTATTAGAGATTGCAGATAAGGGTCACCAATGTGTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGTAGAAGGTATTAGAGATTGCAGATAAGGGTCACCAATGTGTGT  930

seq1  GAGGAGAGTGAAGAGAAAAGACATTGAGAGTTGCCAGCAATTGTCTGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGTGAAGAGAAAAGACATTGAGAGTTGCCAGCAATTGTCTGAAG  980

seq1  GAGAGATGGTTACAATTACTAGCCCAGAGATGTTTTCAACACTTCTTCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATGGTTACAATTACTAGCCCAGAGATGTTTTCAACACTTCTTCCT  1030

seq1  CTACCACCCAGGTATGTGCTCTCCCTCCACACAGGTGAGCTTCCGAGTGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACCCAGGTATGTGCTCTCCCTCCACACAGGTGAGCTTCCGAGTGC  1080

seq1  CAAGAGATCCCAGAAGGAGACAAGGATTACAAAAGCCCAACACATCACAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGATCCCAGAAGGAGACAAGGATTACAAAAGCCCAACACATCACAG  1130

seq1  CAAATGTCCTCAAATGAAAAGAATTC  1173
      ||||||||||||||||||||||||||
seq2  CAAATGTCCTCAAATGAAAAGAATTC  1156

seq1: chr15_36560353_36561391
seq2: B6Ng01-038G19.g_67_1093

seq1  GAATTCCACTGAGTTTGAAGCTAGCCTGGTCTCTATAGTTTCCATCTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGAGTTTGAAGCTAGCCTGGTCTCTATAGTTTCCATCTACC  50

seq1  CTAGGCTACAGAATAAGACTGTTCCAGGATCAGAGATTCTCATTTCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTACAGAATAAGACTGTTCCAGGATCAGAGATTCTCATTTCTTCT  100

seq1  TCTTGTGATCCTTCTTCTTGTGATAGGCGTTTTCTAGCACTGAGCTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGATCCTTCTTCTTGTGATAGGCGTTTTCTAGCACTGAGCTACAC  150

seq1  ATCCAGCCCCCAAATTGTTTCTTAAACTAGGAAATGCACACTTGGGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCCCCCAAATTGTTTCTTAAACTAGGAAATGCACACTTGGGGTCA  200

seq1  CACCAGAGCCCAAAGGTTGGCCTTGGCTAACAGGCTTTTGCGGTAACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGCCCAAAGGTTGGCCTTGGCTAACAGGCTTTTGCGGTAACTCC  250

seq1  AGCAGAGGATTAGTGAGAGGCACTGAGAAAAGGGGGAGGAAATGTTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGATTAGTGAGAGGCACTGAGAAAAGGGGGAGGAAATGTTGTCC  300

seq1  GGCTGCCCAGGGACATGCAAAGGGAATCTCAGAGGAGAGCCTTGGCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCAGGGACATGCAAAGGGAATCTCAGAGGAGAGCCTTGGCAGGC  350

seq1  AGCAGCCGGGCTTTACTCCAAGAAGGGTACACACAAAGTCATGAGTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCGGGCTTTACTCCAAGAAGGGTACACACAAAGTCATGAGTCCAT  400

seq1  CAGAAAGAAAGTTCCTTTCCTGACAGGGAAACAGGAGATCCAAGTCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAAGTTCCTTTCCTGACAGGGAAACAGGAGATCCAAGTCTTAA  450

seq1  GTCTGAGCCCATGGGCTGTGTCATGCGGCTCACATCCTCTGTTCAGGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCCCATGGGCTGTGTCATGCGGCTCACATCCTCTGTTCAGGTTT  500

seq1  CCATATATATCATTAGTCATCTGTTTGCAGGGGAAGAGTCCTCTGGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATATATCATTAGTCATCTGTTTGCAGGGGAAGAGTCCTCTGGGGTC  550

seq1  CCTTACTCCTGGGTGACAGTCTCAGTCATGTTCTAGTTTTCGTTGAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTCCTGGGTGACAGTCTCAGTCATGTTCTAGTTTTCGTTGAATTT  600

seq1  AATCTGCCCATCTACCAACATCCTATTTTTTTTCCTAGAATTTACTCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCCCATCTACCAACATCCTATTTTTTTTCCTAGAATTTACTCAAC  650

seq1  CTGAGTCTGTCCATAAGAAACTGATCTGTTTGCTATGCTAATGAAATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTGTCCATAAGAAACTGATCTGTTTGCTATGCTAATGAAATCAG  700

seq1  GGTTCTGCACTTGCCAGGTTGAGTACTAGGCCCTGGACTGATCATCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGCACTTGCCAGGTTGAGTACTAGGCCCTGGACTGATCATCCCCA  750

seq1  CCAAGAAACATCTTAGAAAGGGATTGCTCATCTCTCCAGTGATTTCCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAACATCTTAGAAAGGGATTGCTCATCTCTCCAGTGATTTCCTGT  800

seq1  GACACATAATCACAGGGCTGGCTGGCCAGTAGCTACAACTCATCCTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATAATCACAGGGCTGGCTGGCCAGTAGCTACAACTCATCCTGGGG  850

seq1  GTTCAGGAGACTCATGGAGATGATAACATCCGAATTCTATCGTAAAAGAT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTTCAGGAGACTCATGGAGATGATAACATCCG-ATTCTATCGTAAAAGAT  899

seq1  GAGTAAGAGGTAGGCAGAGCCTTCCCAGCACAGTCAGGGCAGGAAGAAGC  950
      |||||||| ||||||||||||||||||||||||||| |||||    ||||
seq2  GAGTAAGA-GTAGGCAGAGCCTTCCCAGCACAGTCA-GGCAG---AAAGC  944

seq1  CAAATGTAGAGGTTTAGGGATGAGAAGGGACAGTTGGAAGATGGAGGGCC  1000
      |||||||||| ||||| ||||||||||||||||||||||||||   ||||
seq2  CAAATGTAGA-GTTTA-GGATGAGAAGGGACAGTTGGAAGATG--AGGCC  990

seq1  CTGGAGTCTCAGGACAAAGAAAGCCCTTTACGTCTCTGA  1039
      ||| ||||||| ||| |||||||||||||||||||||||
seq2  CTGTAGTCTCA-GAC-AAGAAAGCCCTTTACGTCTCTGA  1027