BAC Information

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BAC

Clone NameB6Ng01-038H23
Chromosome15 (Build37)6 (Build37)
Map Location 99,387,037 - 99,388,170130,222,175 - 130,223,107
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCcnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137
Downstream geneAqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4, Slc11a2, EG432982, Letmd1, BC035295, Tcfcp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038H23.bB6Ng01-038H23.g
ACCDH866040DH866041
length1,124988
definitionDH866040|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H23, 5' end.DH866041|Mus musculus domesticus DNA, BAC clone: B6Ng01-038H23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,387,037 - 99,388,170)(130,222,175 - 130,223,107)
sequence
gaattctgtagctccctgcagggtgctggctgatgttggccgtgggaata
gacacccaagttctaggccatgctgtctcctgaacctcagctcccccatt
ggtctggagagtatgagtgttcttgggacagagcagggcaccggtcagag
tgggagccagtctgacctgggtttcaaagcagtgagtgttcctgtaggtg
ccatggaacacaggttgctttccccatcacagaagagagctcagaagcag
tagtcttctgtgtgacatactcctggcttattgggactcttctaggacct
tgaggagaccttagccacattcccacagccatggagttttgtgaaccttg
ccattggctgtttgtgtctgtgagagctctcctcagacggtacaaacttc
agacatgcacactggaaggagcactgaatttcttagaccagctgtgtaac
cccagccttattcatgtgggctgtctgaagccctgacatactccgtgctg
taaacctcaggctgttgcacacatacctccctgtcaggacatttgttact
gccttttgtactggctgattttgtgtcaatttgacataagctggagttgt
cacaaagaaaggagcttcagaggaggaaatgcctccatgagatccagctg
taaggcattttctcaattagtgatcaagggggaaaggccccttgtgggtg
ggaccatctctgggctggtagtcttgggttctataagagagaaggctgag
caagccaggagaagcaagccagtaaagaacatccctccatggcttctgca
tcagctcctgcttcctgccctgcttgagttccagtcctgacttcatttgg
tgatgaacagcagtatggaagtgtaagcagaataaccctttcctccccaa
cttgctccttggtcatgatgtttgtgcaggatagaaaccctgactagaca
catggtaatgcctccagacatgccagctggatcacttcagacgcttgcct
gctcctcctgtctacctgtgacccagctagccctaaggcctctgcaggtt
tacacattacccatcctggctacacttcaccattctttcctctcactagc
atcctccaggaacaagcctaagga
gaattctccctcaaacagtacaggccaatcacatttcattacttgtgtgt
gtgtgtgtgaaaaatgataaatctaaaaaaatccagccttaagtaggaat
attttgaggtcaacagcaaccttgtttaaattctgagactcagtaataaa
cacagtcccatatcaaatcatgaaccgaggacacttgaagtttttatttt
aaatagtttattgaactgacctcaatttgatataaataggaagtcaattt
agaaaatgaatatgatgagactgagtggtgggaggataggacagcagaga
gtgagatacgggtggtaggaactcttcctacttgttctctcatccaacat
agagaaatttcatgataagctacattgtttcctatacagaaattccttca
acgccatgttattccagagagttactggattggattgtcttatgacaaga
aaaaaaaggaatgggcatggattgacaatggcccatctaaactgtgagtt
tctgatcccttcagactctaaccctcccttggggattgagagggttgtct
gcaaaggcttttctccatttctcacggttttcctcattttctatggagct
cagaagtaaggacaagttgtataaggcagttcctgatcaagtgttacaaa
aggaagatatatagttgaggagttgaccaaaagtgccttactattgcata
catctaaggatggtgtgttctaacatgggaagggcactagaccgtcaaga
acttaagatggtgtaatgtgagggaatggtcatgacagatacaatgagtc
tgagtataacagatatttattttaacattttattgttgttagcttatatt
atttacagttatttataattataagtacatgtttatatatacatacatat
gaatgctttccttccatttaaaggggtgtgtgagaatctcagttattttt
atcctacaatctggtaaaatttgtttactggataactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_99387037_99388170
seq2: B6Ng01-038H23.b_45_1168

seq1  GAATTCTGTAGCTCCCTGCAGGGTGCTGGCTGATGTTGGCCGTGGGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGCTCCCTGCAGGGTGCTGGCTGATGTTGGCCGTGGGAATA  50

seq1  GACACCCAAGTTCTAGGCCATGCTGTCTCCTGAACCTCAGCTCCCCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCCAAGTTCTAGGCCATGCTGTCTCCTGAACCTCAGCTCCCCCATT  100

seq1  GGTCTGGAGAGTATGAGTGTTCTTGGGACAGAGCAGGGCACCGGTCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGGAGAGTATGAGTGTTCTTGGGACAGAGCAGGGCACCGGTCAGAG  150

seq1  TGGGAGCCAGTCTGACCTGGGTTTCAGAGCAGTGAGTGTTCCTGTAGGTG  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGGAGCCAGTCTGACCTGGGTTTCAAAGCAGTGAGTGTTCCTGTAGGTG  200

seq1  CCATGGAACACAGGTTGCTTTCCCCATCACAGAAGAGAGCTCAGAAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAACACAGGTTGCTTTCCCCATCACAGAAGAGAGCTCAGAAGCAG  250

seq1  TAGTCTTCTGTGTGACATACTCCTGGCTTATTGGGACTCTTCTAGGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTCTGTGTGACATACTCCTGGCTTATTGGGACTCTTCTAGGACCT  300

seq1  TGAGGAGACCTTAGCCACATTCCCACAGCCATGGAGTTTTGTGAACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGACCTTAGCCACATTCCCACAGCCATGGAGTTTTGTGAACCTTG  350

seq1  CCATTGGCTGTTTGTGTCTGTGAGAGCTCTCCTCAGACGGTACAAACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGCTGTTTGTGTCTGTGAGAGCTCTCCTCAGACGGTACAAACTTC  400

seq1  AGACATGCACACTGGAAGGAGCACTGAATTTCTTAGACCAGCTGTGTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCACACTGGAAGGAGCACTGAATTTCTTAGACCAGCTGTGTAAC  450

seq1  CCCAGCCTTATTCATGTGGGCTGTCTGAAGCCCTGACATACTCCGTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTTATTCATGTGGGCTGTCTGAAGCCCTGACATACTCCGTGCTG  500

seq1  TAAACCTCAGGCTGTTGCACACATACCTCCCTGTCAGGACATTTGTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCAGGCTGTTGCACACATACCTCCCTGTCAGGACATTTGTTACT  550

seq1  GCCTTTTGTACTGGCTGATTTTGTGTCAATTTGACATAAGCTGGAGTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTGTACTGGCTGATTTTGTGTCAATTTGACATAAGCTGGAGTTGT  600

seq1  CACAAAGAAAGGAGCTTCAGAGGAGGAAATGCCTCCATGAGATCCAGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAAAGGAGCTTCAGAGGAGGAAATGCCTCCATGAGATCCAGCTG  650

seq1  TAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTG  700

seq1  GGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGAAGGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATCTCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGAAGGCTGAG  750

seq1  CAAGCCAGGAGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCTTCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCAGGAGAAGCAAGCCAGTAAAGAACATCCCTCCATGGCTTCTGCA  800

seq1  TCAGCTCCTGCTTCCTGCCCTGCTTGAGTTCCAGTCCTGACTTCATTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTGCTTCCTGCCCTGCTTGAGTTCCAGTCCTGACTTCATTTGG  850

seq1  TGATGAACAGCAGTATGGAAGTGTAAGCAGAATAAACCCTTTCCTCCCCA  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGATGAACAGCAGTATGGAAGTGTAAGCAGAAT-AACCCTTTCCTCCCCA  899

seq1  ACTTGCTCCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTAAG  950
      ||||||||||||||||||||||||||||||| ||||||||||||||| ||
seq2  ACTTGCTCCTTGGTCATGATGTTTGTGCAGG-ATAGAAACCCTGACT-AG  947

seq1  ACACATGGTAATGCCTCCAGACAATGCCAGCTGGATCACTCCAGAACGCT  1000
      |||||||||||||||||||||| ||||||||||||||||| ||| |||||
seq2  ACACATGGTAATGCCTCCAGAC-ATGCCAGCTGGATCACTTCAG-ACGCT  995

seq1  TGCCTGCTCCTCCTGTCTTACCTGTGACCCAGGCTAGCCCCTAAGGCCCT  1050
      ||||||||||||||||| ||||||||||||| ||||| |||||||| |||
seq2  TGCCTGCTCCTCCTGTC-TACCTGTGACCCA-GCTAG-CCCTAAGG-CCT  1041

seq1  CTGCAGGTTTACACATTACCCAACCCTGGCTACAC-TCACCCATCCTTCC  1099
      ||||||||||||||||||||| | ||||||||||| |||||  || ||||
seq2  CTGCAGGTTTACACATTACCC-ATCCTGGCTACACTTCACCATTCTTTCC  1090

seq1  TCCCACTAAGCATCCTCCAGGAACAAGCCTAAGGA  1134
      || |||| |||||||||||||||||||||||||||
seq2  TCTCACT-AGCATCCTCCAGGAACAAGCCTAAGGA  1124

seq1: chr6_130222175_130223107
seq2: B6Ng01-038H23.g_125_1053 (reverse)

seq1  AAGTTAATCAGTAAACAGATTTCTACCAGATTGTAGATAAAAAATAAACT  50
      ||||||  ||||||||| |||| |||||||||||||   ||||||||   
seq2  AAGTTATCCAGTAAACAAATTT-TACCAGATTGTAGGATAAAAATAA--C  47

seq1  TGAGATTCACACAACACACCTTTAAATGGAAGGAAAGCATTCATATGTAT  100
      |||||||| ||| |||| ||||||||||||||||||||||||||||||||
seq2  TGAGATTCTCAC-ACACCCCTTTAAATGGAAGGAAAGCATTCATATGTAT  96

seq1  GTATATATAAACATGTACTTATATTTATAAATAACTGTAAATAATATAAG  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTATATATAAACATGTACTTATAATTATAAATAACTGTAAATAATATAAG  146

seq1  CTAACAACAATAAAAATGTT-AAATGAATATCTGTTATACTCAGACTCAT  199
      ||||||||||| |||||||| |||| ||||||||||||||||||||||||
seq2  CTAACAACAAT-AAAATGTTAAAATAAATATCTGTTATACTCAGACTCAT  195

seq1  TGTATCTGTCATGACCATTCCCTCACATTACACCATCTTAAGTTCTTGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTGTCATGACCATTCCCTCACATTACACCATCTTAAGTTCTTGAC  245

seq1  GGTCTAGTGCCCTTCCCATGTTAGAACACACCATCCTTAGATGTATGCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGTGCCCTTCCCATGTTAGAACACACCATCCTTAGATGTATGCAA  295

seq1  TAGTAAGGCACTTTTGGTCAACTCCTCAACTATATATCTTCCTTTTGTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGGCACTTTTGGTCAACTCCTCAACTATATATCTTCCTTTTGTAA  345

seq1  CACTTGATCAGGAACTGCCTTATACAACTTGTCCTTACTTCTGAGCTCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGATCAGGAACTGCCTTATACAACTTGTCCTTACTTCTGAGCTCCA  395

seq1  TAGAAAATGAGGAAAACCGTGAGAAATGGAGAAAAGCCTTTGCAGACAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATGAGGAAAACCGTGAGAAATGGAGAAAAGCCTTTGCAGACAAC  445

seq1  CCTCTCAATCCCCAAGGGAGGGTTAGAGTCTGAAGGGATCAGAAACTCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAATCCCCAAGGGAGGGTTAGAGTCTGAAGGGATCAGAAACTCAC  495

seq1  AGTTTAGATGGGCCATTGTCAATCCATGCCCATTCCTTTTTTTTCTTGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGATGGGCCATTGTCAATCCATGCCCATTCCTTTTTTTTCTTGTC  545

seq1  ATAAGACAATCCAATCCAGTAACTCTCTGGAATAACATGGCGTTGAAGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACAATCCAATCCAGTAACTCTCTGGAATAACATGGCGTTGAAGGA  595

seq1  ATTTCTGTATAGGAAACAATGTAGCTTATCATGAAATTTCTCTATGTTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTATAGGAAACAATGTAGCTTATCATGAAATTTCTCTATGTTGG  645

seq1  ATGAGAGAACAAGTAGGAAGAGTTCCTACCACCCGTATCTCACTCTCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAGAACAAGTAGGAAGAGTTCCTACCACCCGTATCTCACTCTCTGC  695

seq1  TGTCCTATCCTCCCACCACTCAGTCTCATCATATTCATTTTCTAAATTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTATCCTCCCACCACTCAGTCTCATCATATTCATTTTCTAAATTGA  745

seq1  CTTCCTATTTATATCAAATTGAGGTCAGTTCAATAAACTATTTAAAATAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTATTTATATCAAATTGAGGTCAGTTCAATAAACTATTTAAAATAA  795

seq1  AAACTTCAAGTGTCCTCGGTTCATGATTTGATATGGGACTGTGTTTATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCAAGTGTCCTCGGTTCATGATTTGATATGGGACTGTGTTTATTA  845

seq1  CTGAGTCTCAGAATTTAAACAAGGTTGCTGTTGACCTCAAAATATTCCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTCAGAATTTAAACAAGGTTGCTGTTGACCTCAAAATATTCCTA  895

seq1  CTTAAGGCTGGATTTTTTTAGATTTATCATTTTT  933
      ||||||||||||||||||||||||||||||||||
seq2  CTTAAGGCTGGATTTTTTTAGATTTATCATTTTT  929