BAC Information

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BAC

Clone NameB6Ng01-038K09
Chromosome15 (Build37)
Map Location 50,280,001 - 50,425,683
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644, LOC100039662
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038K09.bB6Ng01-038K09.g
ACCDH866146DH866147
length7931,046
definitionDH866146|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K09, 5' end.DH866147|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,280,001 - 50,280,792)(50,424,616 - 50,425,683)
sequence
ggaattcatctggtccaaaaatatataatcaaagagctacaccactctct
ggccaagtggttgctcccactcccctgcctggtctgctataatggactgt
gctccctaaaaccatgagccaaaataaatctttccacctttaacttgctt
tgtgtaaggcatttgatcacagcaatgagaagggtaactaataaaattac
tgtgtttaattcacaatatataaaatgtttcaagtaaagaaatatgaaga
caatttttcataataattctgtctctttgaagtgatttcaagttagggtc
actatagacaagtgtgtgcttcatgagacataagaattacagtgtcccaa
gaggggaggcatataactgctccaaccttcttcactttaatatttctccc
ttcatttattttctacaagacttcaggtagagaaaagacagaagagaggg
aaagattcattaaacaattaatatttgcatttttaacattttctttatcc
attgacattgaattccatcaccttcaccttgaaattttttccatgattaa
aagaaacctttaaaaggagggattatagttcataggtgagctacagttca
tcatggcaaggcagtcaaagcagcaggacactgaagctgctatcatacac
agagccaagagacaacgcacagttgtcaattgggtaggatctgggaagag
atgagtgaggggggaaacatgatcagagtatatatatatatatatatata
tatatatatatatatatatatatatcaaagctattcatatata
gaattcagtcagacattgtgttattttgtgttgtaactatagagacctca
cgtacactatgtgcataattcataaacaaagataaagatttcgttgcaca
agataaagcagttatacacctggttagattttgttctttaaaatgaatcg
ttgaatactctatcctcttcacttccccaaattttgatcaagtttagaaa
agtccacaataaccatgaagaggctcagaaaagttgttcagcttttctcc
attaaggctttggttttgtttaatactaataaattaattatttttttaaa
agtctttattctaggtaacatacatattgtcaataagaatgatataagag
atagtgcattcaaacctagttttcaataattaggatcttaaagttaccta
ttactcaaagctgctcttttcaaatagagttggataacatgaaacaatag
aaaacaactataaactatgcagtcctcagagaattttttaaaattaagtt
tttctcttaaggatgtttggattaattattctaagatgtaacttagataa
aaatactaatgtggaattcttcagactgatacatttcttttttttttttt
tttttttttttttggttttctagatatctgagtagtaattcaatgtcctc
cggtaattttgtattgttggagggctaaacaatttcaccaggaaacagtt
ggtactaaatgcaatttctctctatgtcttacactgtgggttcacaaatt
actttttaaaatggcagtgaaacagtttgaaagacaacgcaaggagaatt
tcaacgattttcacttcatagaaaagaacattcgtccagatgcattcctt
gcttctcttgcttctgggttgtcatcctttgagatggtggaatcacgtaa
aaataaaatctcccttttcttctttaagtcatcctacatatgaaaacaac
acatgttataaacaacattagtctgtatctatacaggaactgttgtgtct
tgaacaggtaagctacttattctgcttctccctctgatggacaagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_50280001_50280792
seq2: B6Ng01-038K09.b_46_838

seq1  GGAATTCATCTGGTCCAAAAATATATAATCAAAGAGCTACACCACTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCATCTGGTCCAAAAATATATAATCAAAGAGCTACACCACTCTCT  50

seq1  GGCCAAGTGGTTGCTCCCACTCCCCTGCCTGGTCTGCTATAATGGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGTGGTTGCTCCCACTCCCCTGCCTGGTCTGCTATAATGGACTGT  100

seq1  GCTCCCTAAAACCATGAGCCAAAATAAATCTTTCCACCTTTAACTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTAAAACCATGAGCCAAAATAAATCTTTCCACCTTTAACTTGCTT  150

seq1  TGTGTAAGGCATTTGATCACAGCAATGAGAAGGGTAACTAATAAAATTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAGGCATTTGATCACAGCAATGAGAAGGGTAACTAATAAAATTAC  200

seq1  TGTGTTTAATTCACAATATATAAAATGTTTCAAGTAAAGAAATATGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAATTCACAATATATAAAATGTTTCAAGTAAAGAAATATGAAGA  250

seq1  CAATTTTTCATAATAATTCTGTCTCTTTGAAGTGATTTCAAGTTAGGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTCATAATAATTCTGTCTCTTTGAAGTGATTTCAAGTTAGGGTC  300

seq1  ACTATAGACAAGTGTGTGCTTCATGAGACATAAGAATTACAGTGTCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGACAAGTGTGTGCTTCATGAGACATAAGAATTACAGTGTCCCAA  350

seq1  GAGGGGAGGCATATAACTGCTCCAACCTTCTTCACTTTAATATTTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGAGGCATATAACTGCTCCAACCTTCTTCACTTTAATATTTCTCCC  400

seq1  TTCATTTATTTTCTACAAGACTTCAGGTAGAGAAAAGACAGAAGAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTATTTTCTACAAGACTTCAGGTAGAGAAAAGACAGAAGAGAGGG  450

seq1  AAAGATTCATTAAACAATTAATATTTGCATTTTTAACATTTTCTTTATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCATTAAACAATTAATATTTGCATTTTTAACATTTTCTTTATCC  500

seq1  ATTGACATTGAATTCCATCACCTTCACCTTGAAATTTTTTCCATGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATTGAATTCCATCACCTTCACCTTGAAATTTTTTCCATGATTAA  550

seq1  AAGAAACCTTTAAAAGGAGGGATTATAGTTCATAGGTGAGCTACAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCTTTAAAAGGAGGGATTATAGTTCATAGGTGAGCTACAGTTCA  600

seq1  TCATGGCAAGGCAGTCAAAGCAGCAGGACACTGAAGCTGCTATCATACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCAAGGCAGTCAAAGCAGCAGGACACTGAAGCTGCTATCATACAC  650

seq1  AGAGCCAAGAGACAACGCACAGTTGTCAATTGGGTAGGATCTGGGAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAGAGACAACGCACAGTTGTCAATTGGGTAGGATCTGGGAAGAG  700

seq1  ATGAGTGAGGGGGGAAACATGATCAGAG--TATATATATATATATATATA  748
      ||||||||||||||||||||||||||||  ||||||||||||||||||||
seq2  ATGAGTGAGGGGGGAAACATGATCAGAGTATATATATATATATATATATA  750

seq1  TATATATATATATATATATATATATCAAAGTATATTTATATATA  792
      ||||||||||||||||||||||||||||||  |||| |||||||
seq2  TATATATATATATATATATATATATCAAAG-CTATTCATATATA  793

seq1: chr15_50424616_50425683
seq2: B6Ng01-038K09.g_69_1114 (reverse)

seq1  ACTTGT-CATCTAGAGTGGAGAAGCAGGATAAGTAATGTCTTACCCTTGT  49
      |||||| |||| |||| |||||||||| |||||||    ||||||  |||
seq2  ACTTGTCCATC-AGAG-GGAGAAGCAGAATAAGTA---GCTTACC--TGT  43

seq1  TCCATAGCAACAACAGGTTTCCCTGTTAATTAGATACAGGCTAATTGTTG  99
      ||   ||  |||||||   | |||||    ||||||||| |||| |||||
seq2  TC--AAGACACAACAG---TTCCTGT---ATAGATACAGACTAA-TGTTG  84

seq1  TTTATAAACATTGTGATTGTTTTTCATATGTAAGATGACTTATAAGATGA  149
      ||||| |||| |||| ||| |||||||||||| ||||||||| |||| ||
seq2  TTTAT-AACA-TGTG-TTG-TTTTCATATGTAGGATGACTTA-AAGAAGA  129

seq1  AAAAGGAGATTTTATTTTTACGTGATTCCACATCCTCAAAGGATGACAAA  199
      ||| |||||||||||||||||||||||||||   ||||||||||||| ||
seq2  AAAGGGAGATTTTATTTTTACGTGATTCCACCATCTCAAAGGATGAC-AA  178

seq1  CCCAGAAGCAAGAGAAAGCAAGGAATGCATCTGGACGAATGTTCTTTTCT  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCAAGAG-AAGCAAGGAATGCATCTGGACGAATGTTCTTTTCT  227

seq1  ATGAAGTGAAAATCGTTGAAATTCTCCTTGCGTTGTCTTTCAAACTGTTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTGAAAATCGTTGAAATTCTCCTTGCGTTGTCTTTCAAACTGTTT  277

seq1  CACTGCCATTTTAAAAAGTAATTTGGTGAA-CCACAGTGTAAGACATAGA  348
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  CACTGCCATTTTAAAAAGTAATTT-GTGAACCCACAGTGTAAGACATAGA  326

seq1  GAGAAATTGCATTTAGTACCAACTGTTTCCTGGTGAAATTGTTTAGCCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTGCATTTAGTACCAACTGTTTCCTGGTGAAATTGTTTAGCCCT  376

seq1  CCAACAATACAAAATTACCGGAGGACATTGAATTACTACTCAGATATCTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAATACAAAATTACCGGAGGACATTGAATTACTACTCAGATATCTA  426

seq1  GAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGTATCAGTCTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCAAAAAAAAAAAAAAAAAAAAAAAAAAGAAATGTATCAGTCTGA  476

seq1  AGAATTCCACATTAGTATTTTTATCTAAGTTACATCTTAGAATAATTAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCCACATTAGTATTTTTATCTAAGTTACATCTTAGAATAATTAAT  526

seq1  CCAAACATCCTTAAGAGAAAAACTTAATTTTAAAAAATTCTCTGAGGACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACATCCTTAAGAGAAAAACTTAATTTTAAAAAATTCTCTGAGGACT  576

seq1  GCATAGTTTATAGTTGTTTTCTATTGTTTCATGTTATCCAACTCTATTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTTTATAGTTGTTTTCTATTGTTTCATGTTATCCAACTCTATTTG  626

seq1  AAAAGAGCAGCTTTGAGTAATAGGTAACTTTAAGATCCTAATTATTGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGCAGCTTTGAGTAATAGGTAACTTTAAGATCCTAATTATTGAAA  676

seq1  ACTAGGTTTGAATGCACTATCTCTTATATCATTCTTATTGACAATATGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTTTGAATGCACTATCTCTTATATCATTCTTATTGACAATATGTA  726

seq1  TGTTACCTAGAATAAAGACTTTTAAAAAAATAATTAATTTATTAGTATTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCTAGAATAAAGACTTTTAAAAAAATAATTAATTTATTAGTATTA  776

seq1  AACAAAACCAAAGCCTTAATGGAGAAAAGCTGAACAACTTTTCTGAGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACCAAAGCCTTAATGGAGAAAAGCTGAACAACTTTTCTGAGCCT  826

seq1  CTTCATGGTTATTGTGGACTTTTCTAAACTTGATCAAAATTTGGGGAAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATGGTTATTGTGGACTTTTCTAAACTTGATCAAAATTTGGGGAAGT  876

seq1  GAAGAGGATAGAGTATTCAACGATTCATTTTAAAGAACAAAATCTAACCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGATAGAGTATTCAACGATTCATTTTAAAGAACAAAATCTAACCA  926

seq1  GGTGTATAACTGCTTTATCTTGTGCAACGAAATCTTTATCTTTGTTTATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATAACTGCTTTATCTTGTGCAACGAAATCTTTATCTTTGTTTATG  976

seq1  AATTATGCACATAGTGTACGTGAGGTCTCTATAGTTACAACACAAAATAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGCACATAGTGTACGTGAGGTCTCTATAGTTACAACACAAAATAA  1026

seq1  CACAATGTCTGACTGAATTC  1068
      ||||||||||||||||||||
seq2  CACAATGTCTGACTGAATTC  1046