BAC Information

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BAC

Clone NameB6Ng01-038K22
Chromosome15 (Build37)
Map Location 19,250,024 - 19,400,655
singlet/doubletdoublet
Overlap geneEG666875
Upstream geneLOC666839, Cdh10, EG666857
Downstream geneLOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038K22.bB6Ng01-038K22.g
ACCDH866169DH866170
length5811,064
definitionDH866169|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K22, 5' end.DH866170|Mus musculus domesticus DNA, BAC clone: B6Ng01-038K22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,250,024 - 19,250,604)(19,399,590 - 19,400,655)
sequence
gaattctttcccactgaggccagacagggcagccatgaagttgagctgcc
tgtctgctacatatgtctcctttgtggcacagattctaagagctcccagg
gttccaggattgttgaccatttattttaaatatttttatggggtcaagag
tctgaagagtgagaacaattattaaattttaccttaacaattactgtata
tttctggttgcagatgaaattctgtttgagaactattcttagtgttgttt
tgttttgtcttttttttttaacaggtatatgaaaaattgaaaggacagaa
ttatctgttgttgaagcaaagtaactgtcaactctttgccaggaagaagc
ccggactcgcggggactctcctggagttgagcaggatgataagtgttggt
caccagagaagaaccatattgggcagggagtcttattgaagcaggaattc
actttaatgtggcagcactttgcttatatagatagggcaagaaggtgggg
attggggtatgtgcggtgagatgacgtatggggtggtgtgagatgatgag
ggaaatgggatatcttcatggggcttatgaa
gaattctattagtgtcctgttgtataagaatgaagactagaaatgcaaaa
tgtgctgaaatgaaagtggcagctggtctacttttttctgtatgctgaag
ggaaatgcagtactctagcttttacagactcctgagggcatcacgtctcc
tgatcatggccccaatctctgggacttgcaatcaggtattttacaaaaca
aacaaacaagcatacaaacaaacaaacaaaggtgtaggtctatctgtcac
tgctttgtagaagagagctgaaataaataacagagtcttgagactcagtt
gaataataagtggtcacttcattcacctcaagtcacttagcttattcaaa
cttgtgacaacattttgtcgtgaaagattaaatatagttcttaagaataa
tgatatggctgcctttggcaggggttcagagcatcatccatcctgccaca
agaaatatgtgaaaaaatctgaaagatatgaatattttcttatttctatc
cagaaaatgcttctatcagagcccatgggagataatttaatttcctagat
gccatctcatgtcaagttgtctgtctataaaacaaacttcaatgtaaaca
tacatcatttatttttatgtattgttgctttttgtctcagctggatactg
tgagcttaaacctccaccacacatacacatttcatcctttgatgattatc
agatgttggagtggaatgagtctcctttaagttcatgtgtttggacattt
ttgttgtttttgttgttgctgcttctgttttgaaaggtatggaactttta
ggtagtagatacttgttgaaggacacactcataaagggaaggaggaggca
ggtagatattgagagttgatagcctcaaaccagttctagtgtgatgaact
gtgatcagatgtcttctctccactattactatgtttccctaaccactatg
aactggtttcctgaaacatagctaaaatatattcttccattcatatgttt
catttggtagcttttaatccacagcactgaacttaactgataaagaagtt
gtttacaggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_19250024_19250604
seq2: B6Ng01-038K22.b_47_627

seq1  GAATTCTTTCCCACTGAGGCCAGACAGGGCAGCCATGAAGTTGAGCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCACTGAGGCCAGACAGGGCAGCCATGAAGTTGAGCTGCC  50

seq1  TGTCTGCTACATATGTCTCCTTTGTGGCACAGATTCTAAGAGCTCCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTACATATGTCTCCTTTGTGGCACAGATTCTAAGAGCTCCCAGG  100

seq1  GTTCCAGGATTGTTGACCATTTATTTTAAATATTTTTATGGGGTCAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGATTGTTGACCATTTATTTTAAATATTTTTATGGGGTCAAGAG  150

seq1  TCTGAAGAGTGAGAACAATTATTAAATTTTACCTTAACAATTACTGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAGTGAGAACAATTATTAAATTTTACCTTAACAATTACTGTATA  200

seq1  TTTCTGGTTGCAGATGAAATTCTGTTTGAGAACTATTCTTAGTGTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTTGCAGATGAAATTCTGTTTGAGAACTATTCTTAGTGTTGTTT  250

seq1  TGTTTTGTCTTTTTTTTTTAACAGGTATATGAAAAATTGAAAGGACAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTCTTTTTTTTTTAACAGGTATATGAAAAATTGAAAGGACAGAA  300

seq1  TTATCTGTTGTTGAAGCAAAGTAACTGTCAACTCTTTGCCAGGAAGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGTTGTTGAAGCAAAGTAACTGTCAACTCTTTGCCAGGAAGAAGC  350

seq1  CCGGACTCGCGGGGACTCTCCTGGAGTTGAGCAGGATGATAAGTGTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGACTCGCGGGGACTCTCCTGGAGTTGAGCAGGATGATAAGTGTTGGT  400

seq1  CACCAGAGAAGAACCATATTGGGCAGGGAGTCTTATTGAAGCAGGAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAGAAGAACCATATTGGGCAGGGAGTCTTATTGAAGCAGGAATTC  450

seq1  ACTTTAATGTGGCAGCACTTTGCTTATATAGATAGGGCAAGAAGGTGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAATGTGGCAGCACTTTGCTTATATAGATAGGGCAAGAAGGTGGGG  500

seq1  ATTGGGGTATGTGCGGTGAGATGACGTATGGGGTGGTGTGAGATGATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTATGTGCGGTGAGATGACGTATGGGGTGGTGTGAGATGATGAG  550

seq1  GGATATGGGATAACTTCATGGGGCTTATGAA  581
      ||| |||||||| ||||||||||||||||||
seq2  GGAAATGGGATATCTTCATGGGGCTTATGAA  581

seq1: chr15_19399590_19400655
seq2: B6Ng01-038K22.g_68_1131 (reverse)

seq1  CCACTCCCTGT-AACAACTTCTGTATCAGTTAAGTTCAGTGCTGTGATTT  49
      ||||| ||||| |||||||||| |||||||||||||||||||||||  ||
seq2  CCACT-CCTGTAAACAACTTCTTTATCAGTTAAGTTCAGTGCTGTGGATT  49

seq1  AAAAGACTACCAAATGAAACATATGAATGGAAGAATATATTTTAGCTTAT  99
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAAG-CTACCAAATGAAACATATGAATGGAAGAATATATTTTAGC-TAT  97

seq1  GTCTCAGGAAACCAGTTCATAGTGGTTAGGGAAACATAGTAATAGTGGAG  149
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGGAAACCAGTTCATAGTGGTTAGGGAAACATAGTAATAGTGGAG  147

seq1  AGAAGACATCTGATCACAGTTCATCACACTAGAACTGGTTTGAGGCTATC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACATCTGATCACAGTTCATCACACTAGAACTGGTTTGAGGCTATC  197

seq1  AACTCTCAATATCTACCTGCCTCCTCCTTCCCTTTATGAGTGTGTCCTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCAATATCTACCTGCCTCCTCCTTCCCTTTATGAGTGTGTCCTTC  247

seq1  AACAAGTATCTACTACCTAAAAGTTCCATACCTTTCAAAACAGAAGCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGTATCTACTACCTAAAAGTTCCATACCTTTCAAAACAGAAGCAGC  297

seq1  AACAACAAAAACAACAAAAATGTCCAAACACATGAACTTAAAGGAGACTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAAAAACAACAAAAATGTCCAAACACATGAACTTAAAGGAGACTC  347

seq1  ATTCCACTCCAACATCTGATAATCATCAAAGGATGAAATGTGTATGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTCCAACATCTGATAATCATCAAAGGATGAAATGTGTATGTGTG  397

seq1  GTGGAGGTTTAAGCTCACAGTATCCAGCTGAGACAAAAAGCAACAATACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGGTTTAAGCTCACAGTATCCAGCTGAGACAAAAAGCAACAATACA  447

seq1  TAAAAATAAATGATGTATGTTTACATTGAAGTTTGTTTTATAGACAGACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAAATGATGTATGTTTACATTGAAGTTTGTTTTATAGACAGACA  497

seq1  ACTTGACATGAGATGGCATCTAGGAAATTAAATTATCTCCCATGGGCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACATGAGATGGCATCTAGGAAATTAAATTATCTCCCATGGGCTCT  547

seq1  GATAGAAGCATTTTCTGGATAGAAATAAGAAAATATTCATATCTTTCAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGCATTTTCTGGATAGAAATAAGAAAATATTCATATCTTTCAGA  597

seq1  TTTTTTCACATATTTCTTGTGGCAGGATGGATGATGCTCTGAACCCCTGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACATATTTCTTGTGGCAGGATGGATGATGCTCTGAACCCCTGC  647

seq1  CAAAGGCAGCCATATCATTATTCTTAAGAACTATATTTAATCTTTCACGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCAGCCATATCATTATTCTTAAGAACTATATTTAATCTTTCACGA  697

seq1  CAAAATGTTGTCACAAGTTTGAATAAGCTAAGTGACTTGAGGTGAATGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTTGTCACAAGTTTGAATAAGCTAAGTGACTTGAGGTGAATGAA  747

seq1  GTGACCACTTATTATTCAACTGAGTCTCAAGACTCTGTTATTTATTTCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACTTATTATTCAACTGAGTCTCAAGACTCTGTTATTTATTTCAG  797

seq1  CTCTCTTCTACAAAGCAGTGACAGATAGACCTACACCTTTGTTTGTTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCTACAAAGCAGTGACAGATAGACCTACACCTTTGTTTGTTTGT  847

seq1  TTGTATGCTTGTTTGTTTGTTTTGTAAAATACCTGATTGCAAGTCCCAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGCTTGTTTGTTTGTTTTGTAAAATACCTGATTGCAAGTCCCAGA  897

seq1  GATTGGGGCCATGATCAGGAGACGTGATGCCCTCAGGAGTCTGTAAAAGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGGCCATGATCAGGAGACGTGATGCCCTCAGGAGTCTGTAAAAGC  947

seq1  TAGAGTACTGCATTTCCCTTCAGCATACAGAAAAAAGTAGACCAGCTGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTACTGCATTTCCCTTCAGCATACAGAAAAAAGTAGACCAGCTGCC  997

seq1  ACTTTCATTTCAGCACATTTTGCATTTCTAGTCTTCATTCTTATACAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATTTCAGCACATTTTGCATTTCTAGTCTTCATTCTTATACAACA  1047

seq1  GGACACTAATAGAATTC  1066
      |||||||||||||||||
seq2  GGACACTAATAGAATTC  1064