BAC Information

Click to search

BAC

Clone NameB6Ng01-039A01
Chromosome15 (Build37)
Map Location 61,163,649 - 61,270,548
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039A01.bB6Ng01-039A01.g
ACCDH866398DH866399
length1,0721,167
definitionDH866398|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A01, 5' end.DH866399|Mus musculus domesticus DNA, BAC clone: B6Ng01-039A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,269,463 - 61,270,548)(61,163,649 - 61,164,836)
sequence
gaattctttattcatgaagtggttaacccttcacctctctgactcatcct
ttgatgcttcttagcttttagagtaaggtaaagccgagacaccctcatat
ataaacacataaacatatctgcatccttacatgctaaacattcagaagct
catacatgcataaaatcaaatagacacctatgcaactctctcctcagagg
atggagaaatagattcaaaatacccagacttccatatattcataaggaga
ctttttttttcctttttaaaaacaagcaggaagtcttgctgactgctgct
gttatggcttcttttatctctttctgtcactagggtatggatacacttcc
tccaccaagtgagtggcaatgtggaaacacacatgtattcctatacttgg
tacagtatatgtggtctccagaaggtatgatctacacgaaagtatgaata
aagactcactggatggcattagaaaagatcgaggtatctatgagaactct
ccccagccatttcctgtctctgtcaatgctcagagatcctcagagcctga
ggctcaacgtagagcccagactaagcagaatagaaccacaaactgtatcc
tggacgatccaaggccatcactgctgccaagctcttccctgctacacctc
cctctcatattcaaacccaaaccagcaagacaacttgcttaaataggcca
taagtatttgttcttttcaagtttataaatatttgaatttcagttatttt
ttttaataaagctaagtcatgaatattttgttcatgactttggatacatt
tattatcagaatatgcctagaaatggagtttcaaggtcatgacataggca
aatatttaacttcaccaggcctttgtaggtgttttaaaagaatgaaaata
attcatacacaaagcagaattagttatgtcctagctacaacatacttact
ggtaatgtttttttgtttttgtttttttttttacaactatttaaaatttt
agccatcctaatagggtggagtaaaaagaaaacaacttctttacttttaa
aatttttaaataattgcccatt
gaattctcagttttgctagagaaaaaggaatttcaacctaaaattaacac
tccatttcttttataaattctttggaagtactgattgtgtatcagacatt
gaattgacctctagattattaaactttatatgtaaatactaagtttataa
actctcaaatctttaaatataatgtttaatatggtttgattgattctgaa
atgtctccattaggctcatgattgagctctatggtttttagcttgtgatc
ctgttttatgagttacggaactctcaagatgtggaggccgataggggaat
tgcatcactgcgagtaggccattcagggtatttgctgctctggtttgacc
tcctttctctgctttctggcctgccatgctgactgagcctctgccatact
ctgtggcacccataccatccttacaattccctaaaattgctttaaaacca
tgaactaaaacaatgttttcttctcctatagcatctctatcaggtatgtc
attcaagtgaggataagaataaataaaacaatgtttaaatattgtaataa
tcacaataaatgtcctcaaaagacaaggggaaatttgacatgaaacatga
acgagaataaaatattaaaagaaaagactgtccttttggctgtaaagtag
aattcaaaatattcaaataaatagctccatagattaattacaaaatgaac
atggctaaaacaagcacacaggaagttcctgtttttctgggaaaactcaa
ctccattctcattgtcttccaacagagttagtaaggctcacccacatgat
ataaaacaatgtcccaacttacaatgtgctgatgatctgtaatcatgtct
gcaaatgaactcactgaagcctctactttgttgtttgattaatatttgag
gagctctatgtaaacaaccacattgactaattaaactgacctttaccacg
gacagaaatgtgtgctgaaatacagatacattgatgatttaatgaaagaa
gatggggccactaatatcagtgtgctgtaatgagatttgcgagtagttag
acagttatcctagccacggagcatcacctctgtagccacacaatgggtga
ggtctccttgatcctttcttttctataattattcattactccaactccac
tggagttcctccatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_61269463_61270548
seq2: B6Ng01-039A01.b_45_1116 (reverse)

seq1  AATGGTGCAATTATATTATAATTTCTAAAAGTAAAAGAAGTAGTTTTCTT  50
      ||||| |||||||| ||| || || ||||||| |||||||| |||||| |
seq2  AATGG-GCAATTAT-TTAAAAATTTTAAAAGT-AAAGAAGTTGTTTTC-T  46

seq1  TTTTACTACACACTTATTAGATTGGCTAAAATTTTTAAATAGTTGGTAAA  100
      ||||||| ||| | ||||||  ||||||||| |||||||||||| |||||
seq2  TTTTACTCCAC-CCTATTAGGATGGCTAAAA-TTTTAAATAGTT-GTAAA  93

seq1  AAAAAAAAAACAAAAAACAAAAAAAACAATTACCAGTAAGTATGTTTGTA  150
      ||||||||    |||||||||||||   |||||||||||||||| |||||
seq2  AAAAAAAA---CAAAAACAAAAAAA--CATTACCAGTAAGTATG-TTGTA  137

seq1  GCTAGGACATAACTAATTCTGCTTTGTGTATGAATTATTTTCATTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGACATAACTAATTCTGCTTTGTGTATGAATTATTTTCATTCTTTT  187

seq1  AAAAACACCTACAAAGGCCTGGTGAAGTTAAATATTTGCCTATGTCATGA  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAACACCTACAAAGGCCTGGTGAAGTTAAATATTTGCCTATGTCATGA  236

seq1  CCTTGAAACTCCATTTCTAGGCATATTCTGATAATAAATGTATCCAAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAACTCCATTTCTAGGCATATTCTGATAATAAATGTATCCAAAGT  286

seq1  CATGAACAAAATATTCATGACTTAGCTTTATTAAAAAAAATAACTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACAAAATATTCATGACTTAGCTTTATTAAAAAAAATAACTGAAAT  336

seq1  TCAAATATTTATAAACTTGAAAAGAACAAATACTTATGGCCTATTTAAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTTATAAACTTGAAAAGAACAAATACTTATGGCCTATTTAAGC  386

seq1  AAGTTGTCTTGCTGGTTTGGGTTTGAATATGAGAGGGAGGTGTAGCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCTTGCTGGTTTGGGTTTGAATATGAGAGGGAGGTGTAGCAGGG  436

seq1  AAGAGCTTGGCAGCAGTGATGGCCTTGGATCGTCCAGGATACAGTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTGGCAGCAGTGATGGCCTTGGATCGTCCAGGATACAGTTTGTG  486

seq1  GTTCTATTCTGCTTAGTCTGGGCTCTACGTTGAGCCTCAGGCTCTGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTCTGCTTAGTCTGGGCTCTACGTTGAGCCTCAGGCTCTGAGGA  536

seq1  TCTCTGAGCATTGACAGAGACAGGAAATGGCTGGGGAGAGTTCTCATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGCATTGACAGAGACAGGAAATGGCTGGGGAGAGTTCTCATAGA  586

seq1  TACCTCGATCTTTTCTAATGCCATCCAGTGAGTCTTTATTCATACTTTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCGATCTTTTCTAATGCCATCCAGTGAGTCTTTATTCATACTTTCG  636

seq1  TGTAGATCATACCTTCTGGAGACCACATATACTGTACCAAGTATAGGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATCATACCTTCTGGAGACCACATATACTGTACCAAGTATAGGAAT  686

seq1  ACATGTGTGTTTCCACATTGCCACTCACTTGGTGGAGGAAGTGTATCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTGTTTCCACATTGCCACTCACTTGGTGGAGGAAGTGTATCCAT  736

seq1  ACCCTAGTGACAGAAAGAGATAAAAGAAGCCATAACAGCAGCAGTCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGTGACAGAAAGAGATAAAAGAAGCCATAACAGCAGCAGTCAGCA  786

seq1  AGACTTCCTGCTTGTTTTTAAAAAGGAAAAAAAAAGTCTCCTTATGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTCCTGCTTGTTTTTAAAAAGGAAAAAAAAAGTCTCCTTATGAATA  836

seq1  TATGGAAGTCTGGGTATTTTGAATCTATTTCTCCATCCTCTGAGGAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAAGTCTGGGTATTTTGAATCTATTTCTCCATCCTCTGAGGAGAGA  886

seq1  GTTGCATAGGTGTCTATTTGATTTTATGCATGTATGAGCTTCTGAATGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATAGGTGTCTATTTGATTTTATGCATGTATGAGCTTCTGAATGTT  936

seq1  TAGCATGTAAGGATGCAGATATGTTTATGTGTTTATATATGAGGGTGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTAAGGATGCAGATATGTTTATGTGTTTATATATGAGGGTGTCT  986

seq1  CGGCTTTACCTTACTCTAAAAGCTAAGAAGCATCAAAGGATGAGTCAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTACCTTACTCTAAAAGCTAAGAAGCATCAAAGGATGAGTCAGAG  1036

seq1  AGGTGAAGGGTTAACCACTTCATGAATAAAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAGGGTTAACCACTTCATGAATAAAGAATTC  1072

seq1: chr15_61163649_61164836
seq2: B6Ng01-039A01.g_65_1231

seq1  GAATTCTCAGTTTTGCTAGAGAAAAAGGAATTTCAACCTAAAATTAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTTTGCTAGAGAAAAAGGAATTTCAACCTAAAATTAACAC  50

seq1  TCCATTTCTTTTATAAATTCTTTGGAAGTACTGATTGTGTATCAGACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCTTTTATAAATTCTTTGGAAGTACTGATTGTGTATCAGACATT  100

seq1  GAATTGACCTCTAGATTATTAAACTTTATATGTAAATACTAAGTTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGACCTCTAGATTATTAAACTTTATATGTAAATACTAAGTTTATAA  150

seq1  ACTCTCAAATCTTTAAATATAATGTTTAATATGGTTTGATTGATTCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAAATCTTTAAATATAATGTTTAATATGGTTTGATTGATTCTGAA  200

seq1  ATGTCTCCATTAGGCTCATGATTGAGCTCTATGGTTTTTAGCTTGTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTCCATTAGGCTCATGATTGAGCTCTATGGTTTTTAGCTTGTGATC  250

seq1  CTGTTTTATGAGTTACGGAACTCTCAAGATGTGGAGGCCGATAGGGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTATGAGTTACGGAACTCTCAAGATGTGGAGGCCGATAGGGGAAT  300

seq1  TGCATCACTGCGAGTAGGCCATTCAGGGTATTTGCTGCTCTGGTTTGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCACTGCGAGTAGGCCATTCAGGGTATTTGCTGCTCTGGTTTGACC  350

seq1  TCCTTTCTCTGCTTTCTGGCCTGCCATGCTGACTGAGCCTCTGCCATACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCTGCTTTCTGGCCTGCCATGCTGACTGAGCCTCTGCCATACT  400

seq1  CTGTGGCACCCATACCATCCTTACAATTCCCTAAAATTGCTTTAAAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCACCCATACCATCCTTACAATTCCCTAAAATTGCTTTAAAACCA  450

seq1  TGAACTAAAACAATGTTTTCTTCTCCTATAGCATCTCTATCAGGTATGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAAAACAATGTTTTCTTCTCCTATAGCATCTCTATCAGGTATGTC  500

seq1  ATTCAAGTGAGGATAAGAATAAATAAAACAATGTTTAAATATTGTAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTGAGGATAAGAATAAATAAAACAATGTTTAAATATTGTAATAA  550

seq1  TCACAATAAATGTCCTCAAAAGACAAGGGGAAATTTGACATGAAACATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATAAATGTCCTCAAAAGACAAGGGGAAATTTGACATGAAACATGA  600

seq1  ACGAGAATAAAATATTAAAAGAAAAGACTGTCCTTTTGGCTGTAAAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAATAAAATATTAAAAGAAAAGACTGTCCTTTTGGCTGTAAAGTAG  650

seq1  AATTCAAAATATTCAAATAAATAGCTCCATAGATTAATTACAAAATGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAAATATTCAAATAAATAGCTCCATAGATTAATTACAAAATGAAC  700

seq1  ATGGCTAAAACAAGCACACAGGAAGTTCCTGTTTTTCTGGGAAAACTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTAAAACAAGCACACAGGAAGTTCCTGTTTTTCTGGGAAAACTCAA  750

seq1  CTCCATTCTCATTGTCTTCCAACAGAGTTAGTAAGGCTCACCCACATGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCTCATTGTCTTCCAACAGAGTTAGTAAGGCTCACCCACATGAT  800

seq1  ATAAAACAATGTCCCAACTTACAATGTGCTGATGATCTGTAATCATGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACAATGTCCCAACTTACAATGTGCTGATGATCTGTAATCATGTCT  850

seq1  GCAAAATGAACTCACTGAAGCCTCTACTTTGTTGTTTGATTAATATTTGA  900
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GC-AAATGAACTCACTGAAGCCTCTACTTTGTTGTTTGATTAATATTTGA  899

seq1  GGAGCTCTATGTAAAACAACCACATTGACTAATTAAACTGACCTTTACCA  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTATGT-AAACAACCACATTGACTAATTAAACTGACCTTTACCA  948

seq1  CGGACAAGAAATGTGTGCTGAAATAACAGATACATTGATGATTTAATGAA  1000
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  CGGAC-AGAAATGTGTGCTGAAAT-ACAGATACATTGATGATTTAATGAA  996

seq1  AGAAGATGGGGCCACT-ATATCAGTGTGCTGTAATGAGAATTTGCGAAGT  1049
      |||||||||||||||| ||||||||||||||||||||| ||||||| |||
seq2  AGAAGATGGGGCCACTAATATCAGTGTGCTGTAATGAG-ATTTGCG-AGT  1044

seq1  AGTTTAGACAGGTTAT-CTAG-CACCGAGCATCACTCTTGGTAGCCACAC  1097
      || ||||||| ||||| |||| ||| ||||||||| ||  ||||||||||
seq2  AG-TTAGACA-GTTATCCTAGCCACGGAGCATCAC-CTCTGTAGCCACAC  1091

seq1  AATGAGTGAGGTTCTCCTTTTGGTTTCTCTTCTTTTTCTTATAATTTATT  1147
      |||| |||||| |||||||   | | || |||||||   ||||| |||||
seq2  AATGGGTGAGG-TCTCCTT---GATCCT-TTCTTTT--CTATAA-TTATT  1133

seq1  CATTTACTTCCAACATCCAACTGAAGTTTCTCCTCCATCCT  1188
      || |||| |||||| ||| |||| |||   |||||||||||
seq2  CA-TTAC-TCCAAC-TCC-ACTGGAGT---TCCTCCATCCT  1167