BAC Information

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BAC

Clone NameB6Ng01-039M18
Chromosome15 (Build37)
Map Location 88,994,951 - 88,996,085
singlet/doubletsinglet
Overlap genePlxnb2
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11
Downstream geneLOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039M18.bB6Ng01-039M18.g
ACCDH866960DH866961
length1,1511,112
definitionDH866960|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M18, 5' end.DH866961|Mus musculus domesticus DNA, BAC clone: B6Ng01-039M18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggctgagaaacacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
ttcacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccactgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggtttctca
gaaaattggacatggtactacaggaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaactagtaagaaagaaacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccttcaacagaggaatggataaaaaaaaatgtggtacatttacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aatggttggacctggagggcattatcctgagtgaggtaacccaatcacaa
aagaactcaaatgatatgtacttactgattagtggatattaacccagaaa
cttagaatacccaagatataagttacaatttgcaaaacacatgaaactaa
agaagaacgaagaccaaagtgtggacactttgcctcttcttagaattggg
aacaaaacacccatggaaggagttacagagacaaagtttggagctgagac
aaaaggatggaccatctagagactgccatatccagggatccatcccataa
tcagcctccaaacgctgacaccattgcatacactagcaagattttgctga
taggaccctgatatagctgtctctagtgagactacgccggcctagcaaac
acagaagtggatgctcacagtcagctattggatggatcacagggacccca
atggaggagctagagaaaatacccatgagctaaagggatctgcaccctat
aggtggaacacatatgactaccagtaccccggagctctgactctagctgc
atatgtatcaaagatgctagtcgccatcactggaagaggagccatgactg
caaacttaaatgccagtacagggaacgccaggcaaaatggaatgggtggt
g
gaattctccttaacacagctgctggctgggtgctcagacatgcaaggaaa
ccacgggttgcctggtacccaggcccacatgaacatcctaggcaaagcag
agtcaggttctagagattctcagctgcacgtgctgagagcagggctggag
gtactactattctagaaacctagctttgccctccttccccctccaagacg
gagcagtgtagtactaggatcagaggtcatcgtttgagctgttctcctcc
tgcaggtacgcctgtctgtcagccccctgcccaccctgactgaggacgat
gagttactgtgcctctttggtgactcaccaccccaccctgcccgggtaga
ggacgataccgtcatctgtaattccccaagcagcatccctagtacaccgc
caggccaaggtgagacctcatccttcagtccctggacctgcacagcttcc
ttttctctacgcatagctttttctatgttctatctactctcacattttta
gatcactgagcactgtgtgtgagccaatcctgggtgcaggctattgttgg
ggaagaggaaaaaaaaatcccaactttgagagtccctcagtcttagactg
agttctgttctgaggagaccgattcccctgccaagttctttgcacagaca
tccctcctctctgctgtgtccagcctgaggcagctggagctgtctcctga
ggctgaaggcctcaatctgggctaagacaggtgctatgtctgcctgtccc
ttgagcattggggagtaacaaggccgtgaggccatgatgtgacgtgagca
gggacctggaaggccttcccacccagactcagaggagccactgccctcag
cccttgcaggaacagagagagggtgcgaaagcagccaggcccaggggaga
aagatgagcccagccttgggagttgacaccaaagcccagatttgacagca
gcagcagcagctgagctacagcagaccagctgggcctaagctgggtatca
tatgtatcccttgccccagaatagactctctccgctgggcactgggcgag
cccagtccaccttctgctctaactgcctgactgttccactgaattctgca
acatgtgacgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_88994951_88996085
seq2: B6Ng01-039M18.g_69_1180 (reverse)

seq1  CACGTCAACATGGTCTGCAGAATACAGGTGGGAACAGGGTCAGGGGCAGT  50
      |||||| |||||   |||||||| |||   ||||||  ||||  ||||||
seq2  CACGTC-ACATG--TTGCAGAATTCAG--TGGAACA--GTCA--GGCAGT  41

seq1  TAGAGCAGAAGGGTGGAACTGGGCCTCGCCCAGTGCCCAGCGGAGAGGAG  100
      |||||||||| ||||| |||||| |||||||||||||||||||||||   
seq2  TAGAGCAGAA-GGTGG-ACTGGG-CTCGCCCAGTGCCCAGCGGAGAG--A  86

seq1  GTCTATTCTGGGGCCAGGGGATACAATATGGATACCCCAGCCTTAGGCCC  150
      ||||||||||||| || ||||||| |||| |||| ||||| |||||||||
seq2  GTCTATTCTGGGG-CAAGGGATAC-ATAT-GATA-CCCAG-CTTAGGCCC  131

seq1  AGCTGGTCTGCTGTAGGCTCAGCTGGCCTGCTGCTGCTTGTCAAATCTGG  200
      ||||||||||||||| |||||||||  |||||||||| ||||||||||||
seq2  AGCTGGTCTGCTGTA-GCTCAGCTG--CTGCTGCTGC-TGTCAAATCTGG  177

seq1  GCTTTGGTGTCAACTCCCAAGGCTGGGCTCATCTTTCTCCCCTGGGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTGTCAACTCCCAAGGCTGGGCTCATCTTTCTCCCCTGGGCCTG  227

seq1  GCTGCTTTCGCACCCTCTCTCTGTTCCTGCAAGGGCTGAGGGCAGTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCGCACCCTCTCTCTGTTCCTGCAAGGGCTGAGGGCAGTGGCT  277

seq1  CCTCTGAGTCTGGGTGGGAAGGCCTTCCAGGTCCCTGCTCACGTCACATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAGTCTGGGTGGGAAGGCCTTCCAGGTCCCTGCTCACGTCACATC  327

seq1  ATGGCCTCACGGCCTTGTTACTCCCCAATGCTCAAGGGACAGGCAGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCACGGCCTTGTTACTCCCCAATGCTCAAGGGACAGGCAGACAT  377

seq1  AGCACCTGTCTTAGCCCAGATTGAGGCCTTCAGCCTCAGGAGACAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGTCTTAGCCCAGATTGAGGCCTTCAGCCTCAGGAGACAGCTCC  427

seq1  AGCTGCCTCAGGCTGGACACAGCAGAGAGGAGGGATGTCTGTGCAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTCAGGCTGGACACAGCAGAGAGGAGGGATGTCTGTGCAAAGAA  477

seq1  CTTGGCAGGGGAATCGGTCTCCTCAGAACAGAACTCAGTCTAAGACTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGGGGAATCGGTCTCCTCAGAACAGAACTCAGTCTAAGACTGAG  527

seq1  GGACTCTCAAAGTTGGGATTTTTTTTTCCTCTTCCCCAACAATAGCCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCTCAAAGTTGGGATTTTTTTTTCCTCTTCCCCAACAATAGCCTGC  577

seq1  ACCCAGGATTGGCTCACACACAGTGCTCAGTGATCTAAAAATGTGAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGATTGGCTCACACACAGTGCTCAGTGATCTAAAAATGTGAGAGT  627

seq1  AGATAGAACATAGAAAAAGCTATGCGTAGAGAAAAGGAAGCTGTGCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAACATAGAAAAAGCTATGCGTAGAGAAAAGGAAGCTGTGCAGGT  677

seq1  CCAGGGACTGAAGGATGAGGTCTCACCTTGGCCTGGCGGTGTACTAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGACTGAAGGATGAGGTCTCACCTTGGCCTGGCGGTGTACTAGGGA  727

seq1  TGCTGCTTGGGGAATTACAGATGACGGTATCGTCCTCTACCCGGGCAGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTGGGGAATTACAGATGACGGTATCGTCCTCTACCCGGGCAGGG  777

seq1  TGGGGTGGTGAGTCACCAAAGAGGCACAGTAACTCATCGTCCTCAGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGGTGAGTCACCAAAGAGGCACAGTAACTCATCGTCCTCAGTCAG  827

seq1  GGTGGGCAGGGGGCTGACAGACAGGCGTACCTGCAGGAGGAGAACAGCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGCAGGGGGCTGACAGACAGGCGTACCTGCAGGAGGAGAACAGCTC  877

seq1  AAACGATGACCTCTGATCCTAGTACTACACTGCTCCGTCTTGGAGGGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGATGACCTCTGATCCTAGTACTACACTGCTCCGTCTTGGAGGGGGA  927

seq1  AGGAGGGCAAAGCTAGGTTTCTAGAATAGTAGTACCTCCAGCCCTGCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGCAAAGCTAGGTTTCTAGAATAGTAGTACCTCCAGCCCTGCTCT  977

seq1  CAGCACGTGCAGCTGAGAATCTCTAGAACCTGACTCTGCTTTGCCTAGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACGTGCAGCTGAGAATCTCTAGAACCTGACTCTGCTTTGCCTAGGA  1027

seq1  TGTTCATGTGGGCCTGGGTACCAGGCAACCCGTGGTTTCCTTGCATGTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATGTGGGCCTGGGTACCAGGCAACCCGTGGTTTCCTTGCATGTCT  1077

seq1  GAGCACCCAGCCAGCAGCTGTGTTAAGGAGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  GAGCACCCAGCCAGCAGCTGTGTTAAGGAGAATTC  1112